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Chunk #31 — Results — Searches for genes identified by clustered SNPs with nominally-significant case vs control differences in all four samples

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Genomic regions identified by overlapping clusters of nominally-positive SNPs from genome-wide studies of alcohol and illegal substance dependence.
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The clusters from both of the two African-American samples identified six genes that were also identified by clusters from both of the two European-American samples. CDH13, CSMD1 and DSCAM are three cell adhesion molecules that we have identified in many prior studies of addiction vulnerability and/or abilities to quit smoking (see below), while CADPS, MTMR7 and UBASH3B have been identified in fewer prior studies. This modest overlap contrasts with the larger overall overlap between the Affymetrix datasets for the African-American vs European American NIDA/MNB samples [21] and the Illumina datasets for the African-American vs European American dbGAP samples. In the latter case, we can identify 146 chromosomal regions, 88 of which contain 126 genes, in which overlapping results between the two racial/ethnic groups are found in ways not found by chance in 10,000 Monte Carlo simulation trials (data not shown).