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Chunk #39 — EXPERIMENTAL PROCEDURES — Data Sets and Sample Processing

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Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease.
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We compiled six disease- and tissue-specific gene expression datasets consisting of 1647 postmortem specimens from three brain regions (PCF (BA9), VC (BA17) and CB) in LOAD and non-demented subjects recruited through the Harvard Brain Tissue Resource Center (HBTRC). Each subject was diagnosed at intake and via extensive neuropathology examination. Tissues were profiled on a custom-made Agilent 44K array of 40,638 DNA probes and each subject genotyped for 838,958 SNPs.