NetAffx: Affymetrix probesets and annotations.
paper
Cited
Public
Unavailable
- Authors
- Liu, Guoying; Loraine, Ann E; Shigeta, Ron; Cline, Melissa; Cheng, Jill; Valmeekam, Venu; Sun, Shaw; Kulp, David; Siani-Rose, Michael A
- Year
- 2003
- Journal
- Nucleic acids research
- PMID
- 12519953
- DOI
- 10.1093/nar/gkg121
- PMCID
- PMC165568
NetAffx (http://www.affymetrix.com) details and annotates probesets on Affymetrix GeneChip microarrays. These annotations include (i) static information specific to the probeset composition; (ii) sequence annotations extracted from public databases; and (iii) protein sequence-level annotations derived from public domain programs, as well as libraries of hidden Markov models (HMMs) developed at Affymetrix. For each probeset, NetAffx lists the probe sequences, and the consensus sequence interrogated by the probes; for the larger chip sets, interactive maps display this sequence data in genomic context. Sequence annotations include Gene Ontology (GO) terms and depiction of GO graph relationships; predicted protein domains and motifs; orthologous sequences; links to relevant pathways; and links to public databases including UniGene, LocusLink, SWISS-PROT and OMIM.
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| Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. | Yu H et al. | โ | 2007 | โ |
| Tumor-specific and proliferation-specific gene expression typifies murine transgenic B cell lymphomagenesis. | Lenburg ME et al. | โ | 2007 | โ |
| Type I IFN innate immune response to adenovirus-mediated IFN-gamma gene transfer contributes to the regression of cutaneous lymphomas. | Urosevic M et al. | โ | 2007 | โ |
| Acute activation of hippocampal glucocorticoid receptors results in different waves of gene expression throughout time. | Morsink MC et al. | โ | 2006 | โ |
| A gene expression signature predicts survival of patients with stage I non-small cell lung cancer. | Lu Y et al. | โ | 2006 | โ |
| Amplification of the Gene Ontology annotation of Affymetrix probe sets. | Muro EM et al. | โ | 2006 | โ |
| Annotation of androgen dependence to human prostate cancer-associated genes by microarray analysis of mouse prostate. | Singh J et al. | โ | 2006 | โ |
| A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies. | Kuo WP et al. | โ | 2006 | โ |
| Babel's tower revisited: a universal resource for cross-referencing across annotation databases. | Drฤghici S et al. | โ | 2006 | โ |
| Bruch membrane aging alters the gene expression profile of human retinal pigment epithelium. | Cai H et al. | โ | 2006 | โ |
| Changes in gene expression in human renal proximal tubule cells exposed to low concentrations of S-(1,2-dichlorovinyl)-l-cysteine, a metabolite of trichloroethylene. | Lock EA et al. | โ | 2006 | โ |
| Comparative analysis and integrative classification of NCI60 cell lines and primary tumors using gene expression profiling data. | Wang H et al. | โ | 2006 | โ |
| Comparison of differential gene expression of hot and cold thyroid nodules with primary epithelial cell culture models by investigation of co-regulated gene sets. | Eszlinger M et al. | โ | 2006 | โ |
| Comparisons of annotation predictions for affymetrix GeneChips. | Stalteri M et al. | โ | 2006 | โ |
| Coordinated multitissue transcriptional and plasma metabonomic profiles following acute caloric restriction in mice. | Selman C et al. | โ | 2006 | โ |
| Cross-species comparative toxicogenomics as an aid to safety assessment. | Mattes WB | โ | 2006 | โ |
| Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos. | Misirlioglu M et al. | โ | 2006 | โ |
| Effects of spironolactone on human blood mononuclear cells: mineralocorticoid receptor independent effects on gene expression and late apoptosis induction. | Sรธnder SU et al. | โ | 2006 | โ |
| Expoldb: expression linked polymorphism database with inbuilt tools for analysis of expression and simple repeats. | Sharma VK et al. | โ | 2006 | โ |
| Expression profiling identifies three pathways altered in cellular immortalization: interferon, cell cycle, and cytoskeleton. | Fridman AL et al. | โ | 2006 | โ |
| Gene expression analysis of bipolar disorder reveals downregulation of the ubiquitin cycle and alterations in synaptic genes. | Ryan MM et al. | โ | 2006 | โ |
| Gene expression in human hepatocytes in suspension after isolation is similar to the liver of origin, is not affected by hepatocyte cold storage and cryopreservation, but is strongly changed after hepatocyte plating. | Richert L et al. | โ | 2006 | โ |
| Gene expression profile of human airway epithelium induced by hyperoxia in vivo. | Chambellan A et al. | โ | 2006 | โ |
| Gene expression profiling of human articular cartilage grafts generated by tissue engineering. | Kaps C et al. | โ | 2006 | โ |
| GeneTools--application for functional annotation and statistical hypothesis testing. | Beisvag V et al. | โ | 2006 | โ |
| Genome-wide allelic imbalance analysis of pediatric gliomas by single nucleotide polymorphic allele array. | Wong KK et al. | โ | 2006 | โ |
| Genomic analysis of Xenopus organizer function. | Hufton AL et al. | โ | 2006 | โ |
| Genomic inferences of the cis-regulatory nucleotide polymorphisms underlying gene expression differences between Drosophila melanogaster mating races. | Osada N et al. | โ | 2006 | โ |
| Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans. | Meaburn E et al. | โ | 2006 | โ |
| Global transcriptome analysis of genetically identified neurons in the adult cortex. | Rossner MJ et al. | โ | 2006 | โ |
| Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data. | Lewin A et al. | โ | 2006 | โ |
| Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations. | Okoniewski MJ et al. | โ | 2006 | โ |
| Identification of an NF-kappaB-dependent gene network in cells infected by mammalian reovirus. | O'Donnell SM et al. | โ | 2006 | โ |
| Identification of early molecular pathways affected by paraquat in rat lung. | Mainwaring G et al. | โ | 2006 | โ |
| Identification of gene expression changes in transgenic C. elegans overexpressing human alpha-synuclein. | Vartiainen S et al. | โ | 2006 | โ |
| Identification of longevity-associated genes in long-lived Snell and Ames dwarf mice. | Boylston WH et al. | โ | 2006 | โ |
| Identification of ventricular-side-enriched molecules regulated in a stage-dependent manner during cerebral cortical development. | Ajioka I et al. | โ | 2006 | โ |
| Induction of iron homeostasis genes during estrogen-induced uterine growth and differentiation. | Stuckey R et al. | โ | 2006 | โ |
| Induction of the plasminogen activator inhibitor-2 in cells expressing the ZNF198/FGFR1 fusion kinase that is involved in atypical myeloproliferative disease. | Kasyapa CS et al. | โ | 2006 | โ |
| Integration of genomic data for pharmacology and toxicology using Internet resources. | Paananen J et al. | โ | 2006 | โ |
| ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis. | Elfilali A et al. | โ | 2006 | โ |
| Mapping of hippocampal gene clusters regulated by the amygdala to nonlinkage sites for schizophrenia. | Burke RE et al. | โ | 2006 | โ |
| Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems: practical considerations and perspectives. | Clarke JD et al. | โ | 2006 | โ |
| Microarray expression technology: from start to finish. | Elvidge G | โ | 2006 | โ |
| Microarray gene expression data with linked survival phenotypes: diffuse large-B-cell lymphoma revisited. | Segal MR | โ | 2006 | โ |
| New potential ligand-receptor signaling loops in ovarian cancer identified in multiple gene expression studies. | Castellano G et al. | โ | 2006 | โ |
| Ontology annotation treebrowser : an interactive tool where the complementarity of medical subject headings and gene ontology improves the interpretation of gene lists. | Bresell A et al. | โ | 2006 | โ |
| Reversible kinetic analysis of Myc targets in vivo provides novel insights into Myc-mediated tumorigenesis. | Lawlor ER et al. | โ | 2006 | โ |
| Role of strain differences on host resistance and the transcriptional response of macrophages to infection with Yersinia enterocolitica. | van Erp K et al. | โ | 2006 | โ |
| Segregating variation in the transcriptome: cis regulation and additivity of effects. | Hughes KA et al. | โ | 2006 | โ |
| Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment. | Severgnini M et al. | โ | 2006 | โ |
| The dynamic pattern of glucocorticoid receptor-mediated transcriptional responses in neuronal PC12 cells. | Morsink MC et al. | โ | 2006 | โ |
| The Epithelial Cell in Lung Health and Emphysema Pathogenesis. | Mercer BA et al. | โ | 2006 | โ |
| Use of an aggressive MCF-7 cell line variant, TMX2-28, to study cell invasion in breast cancer. | Gozgit JM et al. | โ | 2006 | โ |
| Utilization of a one-dimensional score for surveying chemical-induced changes in expression levels of multiple biomarker gene sets using a large-scale toxicogenomics database. | Kiyosawa N et al. | โ | 2006 | โ |
| Utilization of a toxicogenomic biomarker for evaluation of chemical-induced glutathione deficiency in rat livers across the GeneChip data of different generations. | Kiyosawa N et al. | โ | 2006 | โ |
| Whole genome expression profiling of glucose-dependent insulinotropic peptide (GIP)- and adrenocorticotropin-dependent adrenal hyperplasias reveals novel targets for the study of GIP-dependent Cushing's syndrome. | Lampron A et al. | โ | 2006 | โ |
| 2,3,7,8-tetrachlorodibenzo-p-dioxin induces CYP1B1 expression in human luteinized granulosa cells. | Vidal JD et al. | โ | 2005 | โ |
| ADAPT: a database of affymetrix probesets and transcripts. | Leong HS et al. | โ | 2005 | โ |
| Altered expression of mitochondria-related genes in postmortem brains of patients with bipolar disorder or schizophrenia, as revealed by large-scale DNA microarray analysis. | Iwamoto K et al. | โ | 2005 | โ |
| AML M3 and AML M3 variant each have a distinct gene expression signature but also share patterns different from other genetically defined AML subtypes. | Haferlach T et al. | โ | 2005 | โ |
| Analysis of orthologous gene expression between human pulmonary adenocarcinoma and a carcinogen-induced murine model. | Stearman RS et al. | โ | 2005 | โ |
| Application of functional genomic technologies in a mouse model of retinal degeneration. | Shearstone JR et al. | โ | 2005 | โ |
| Array-based comparative gene expression analysis of tumor cells with increased apoptosis resistance after hypoxic selection. | Weinmann M et al. | โ | 2005 | โ |
| Assessing natural variations in gene expression in humans by comparing with monozygotic twins using microarrays. | Sharma A et al. | โ | 2005 | โ |
| Automated methods of predicting the function of biological sequences using GO and BLAST. | Jones CE et al. | โ | 2005 | โ |
| Cerebral gene expression profiles in sporadic Creutzfeldt-Jakob disease. | Xiang W et al. | โ | 2005 | โ |
| Changes in the transcriptional profile of transporters in the intestine along the anterior-posterior and crypt-villus axes. | Anderle P et al. | โ | 2005 | โ |
| Characterization of transformed Arabidopsis with altered alternative oxidase levels and analysis of effects on reactive oxygen species in tissue. | Umbach AL et al. | โ | 2005 | โ |
| Combining Affymetrix microarray results. | Stevens JR et al. | โ | 2005 | โ |
| CoPub Mapper: mining MEDLINE based on search term co-publication. | Alako BT et al. | โ | 2005 | โ |
| Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14. | Edenberg HJ et al. | โ | 2005 | โ |
| Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach. | Zhang J et al. | โ | 2005 | โ |
| Differential expression and molecular characterisation of Lmo7, Myo1e, Sash1, and Mcoln2 genes in Btk-defective B-cells. | Lindvall JM et al. | โ | 2005 | โ |
| Differential expression of IGF components and insulin receptor isoforms in human seminoma versus normal testicular tissue. | Neuvians TP et al. | โ | 2005 | โ |
| Disease-independent skin recruitment and activation of plasmacytoid predendritic cells following imiquimod treatment. | Urosevic M et al. | โ | 2005 | โ |
| Distinct nuclear gene expression profiles in cells with mtDNA depletion and homoplasmic A3243G mutation. | Jahangir Tafrechi RS et al. | โ | 2005 | โ |
| Effect of controlled ovarian hyperstimulation in IVF on endometrial gene expression profiles. | Horcajadas JA et al. | โ | 2005 | โ |
| Effector CD8+ T cells recovered from an influenza pneumonia differentiate to a state of focused gene expression. | Marshall DR et al. | โ | 2005 | โ |
| Functional profiling of human atrial and ventricular gene expression. | Barth AS et al. | โ | 2005 | โ |
| GandrKB--ontological microarray annotation and visualization. | Schober D et al. | โ | 2005 | โ |
| Gene and protein expression profiling of the microvascular compartment in experimental autoimmune encephalomyelitis in C57Bl/6 and SJL mice. | Alt C et al. | โ | 2005 | โ |
| Gene expression analysis reveals evidence for increased expression of cell cycle-associated genes and Gq-protein-protein kinase C signaling in cold thyroid nodules. | Eszlinger M et al. | โ | 2005 | โ |
| Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR -- how well do they correlate? | Dallas PB et al. | โ | 2005 | โ |
| Gene expression profiling of E2F-1-induced apoptosis. | Jamshidi-Parsian A et al. | โ | 2005 | โ |
| Gene expression profiling of Japanese psoriatic skin reveals an increased activity in molecular stress and immune response signals. | Kulski JK et al. | โ | 2005 | โ |
| Gene ontology mapping as an unbiased method for identifying molecular pathways and processes affected by toxicant exposure: application to acute effects caused by the rodent non-genotoxic carcinogen diethylhexylphthalate. | Currie RA et al. | โ | 2005 | โ |
| GeneRetriever: software to extract all genes and transcripts in between two genetic markers to assist design of human custom microarrays. | Clรฉment-Ziza M et al. | โ | 2005 | โ |
| Genome-wide promoter extraction and analysis in human, mouse, and rat. | Xuan Z et al. | โ | 2005 | โ |
| GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists. | Masseroli M et al. | โ | 2005 | โ |
| Glucocorticoid-induced changes in the global gene expression of lens epithelial cells. | James ER et al. | โ | 2005 | โ |
| GPX-Macrophage Expression Atlas: a database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults. | Grimes GR et al. | โ | 2005 | โ |
| Hepatic gene and protein expression of primary components of the IGF-I axis in long lived Snell dwarf mice. | Papaconstantinou J et al. | โ | 2005 | โ |
| Identification of a proliferation gene cluster associated with HPV E6/E7 expression level and viral DNA load in invasive cervical carcinoma. | Rosty C et al. | โ | 2005 | โ |
| Identification of genes and molecular pathways involved in the progression of premalignant oral epithelia. | Banerjee AG et al. | โ | 2005 | โ |
| Identification of genes involved in the initiation of human Th1 or Th2 cell commitment. | Lund R et al. | โ | 2005 | โ |
| Identification of hepatocyte growth factor activator inhibitor-1B as a potential physiological inhibitor of prostasin. | Fan B et al. | โ | 2005 | โ |
| Identification of hypertension-related genes through an integrated genomic-transcriptomic approach. | Yagil C et al. | โ | 2005 | โ |
| Identifying genetic networks underlying myometrial transition to labor. | Salomonis N et al. | โ | 2005 | โ |
| Imprinted X-inactivation in extra-embryonic endoderm cell lines from mouse blastocysts. | Kunath T et al. | โ | 2005 | โ |
| Inconsistencies over time in 5% of NetAffx probe-to-gene annotations. | Perez-Iratxeta C et al. | โ | 2005 | โ |
| Interpretation of shotgun proteomic data: the protein inference problem. | Nesvizhskii AI et al. | โ | 2005 | โ |
| List of lists-annotated (LOLA): a database for annotation and comparison of published microarray gene lists. | Cahan P et al. | โ | 2005 | โ |
| Microarray analysis in human hepatocytes suggests a mechanism for hepatotoxicity induced by trovafloxacin. | Liguori MJ et al. | โ | 2005 | โ |
| Microarray profiling of isolated abdominal subcutaneous adipocytes from obese vs non-obese Pima Indians: increased expression of inflammation-related genes. | Lee YH et al. | โ | 2005 | โ |
| Neuroprotection by neuregulin-1 following focal stroke is associated with the attenuation of ischemia-induced pro-inflammatory and stress gene expression. | Xu Z et al. | โ | 2005 | โ |
| Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments. | Gao X et al. | โ | 2005 | โ |
| Novel amplicons on the short arm of chromosome 7 identified using high resolution array CGH contain over expressed genes in addition to EGFR in glioblastoma multiforme. | Rossi MR et al. | โ | 2005 | โ |
| Novel target genes of the Wnt pathway and statistical insights into Wnt target promoter regulation. | Ziegler S et al. | โ | 2005 | โ |
| Orphan transcripts in Arabidopsis thaliana: identification of several hundred previously unrecognized genes. | Riaรฑo-Pachรณn DM et al. | โ | 2005 | โ |
| PABPN1 overexpression leads to upregulation of genes encoding nuclear proteins that are sequestered in oculopharyngeal muscular dystrophy nuclear inclusions. | Corbeil-Girard LP et al. | โ | 2005 | โ |
| Recently available techniques applicable to genetic problems in the Middle East. | Ozand PT et al. | โ | 2005 | โ |
| Restraint stress alters lung gene expression in an experimental influenza A viral infection. | Engler A et al. | โ | 2005 | โ |
| Rituximab induces different but overlapping sets of genes in human B-lymphoma cell lines. | Cittera E et al. | โ | 2005 | โ |
| Role of Drosophila HP1 in euchromatic gene expression. | Cryderman DE et al. | โ | 2005 | โ |
| Study of stem cell function using microarray experiments. | Perez-Iratxeta C et al. | โ | 2005 | โ |
| Suppression of human melanoma tumor growth in SCID mice by a human high molecular weight-melanoma associated antigen (HMW-MAA) specific monoclonal antibody. | Hafner C et al. | โ | 2005 | โ |
| The expression profile of purified Drosophila germline stem cells. | Kai T et al. | โ | 2005 | โ |
| The microarray expression analysis identifies BAX as a mediator of beta-carotene effects on apoptosis. | Bodzioch M et al. | โ | 2005 | โ |
| The pathogenesis of molybdenum cofactor deficiency, its delay by maternal clearance, and its expression pattern in microarray analysis. | Reiss J et al. | โ | 2005 | โ |
| The stability of the Arabidopsis transcriptome in transgenic plants expressing the marker genes nptII and uidA. | El Ouakfaoui S et al. | โ | 2005 | โ |
| The type I Hsp40 zinc finger-like region is required for Hsp70 to capture non-native polypeptides from Ydj1. | Fan CY et al. | โ | 2005 | โ |
| Transcriptional changes during neuronal death and replacement in the olfactory epithelium. | Shetty RS et al. | โ | 2005 | โ |
| Transcriptional changes during neuronal death and replacement in the olfactory epithelium. | Shetty RS et al. | โ | 2005 | โ |
| Transcriptional signatures of normal human mammary epithelial cells in response to benzo[a]pyrene exposure: a comparison of three microarray platforms. | Gwinn MR et al. | โ | 2005 | โ |
| Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling. | Bhattacharya S et al. | โ | 2005 | โ |
| Abnormal gene expression profiles in human ovaries from polycystic ovary syndrome patients. | Jansen E et al. | โ | 2004 | โ |
| A knowledge-based clustering algorithm driven by Gene Ontology. | Cheng J et al. | โ | 2004 | โ |
| Allelic imbalance analysis by high-density single-nucleotide polymorphic allele (SNP) array with whole genome amplified DNA. | Wong KK et al. | โ | 2004 | โ |
| Altered cholesterologenic and lipogenic transcriptional profile in livers of aging Snell dwarf (Pit1dw/dwJ) mice. | Boylston WH et al. | โ | 2004 | โ |
| Alternative mapping of probes to genes for Affymetrix chips. | Gautier L et al. | โ | 2004 | โ |
| Annotation and cross-indexing of array elements on multiple platforms. | Mattes WB | โ | 2004 | โ |
| A switch in metabolism precedes increased mitochondrial biogenesis in respiratory chain-deficient mouse hearts. | Hansson A et al. | โ | 2004 | โ |
| Biomedical literature mining: challenges and solutions in the 'omics' era. | Chaussabel D | โ | 2004 | โ |
| Combining gene expression data from different generations of oligonucleotide arrays. | Hwang KB et al. | โ | 2004 | โ |
| Deciphering regulatory patterns of inflammatory gene expression from interleukin-1-stimulated human endothelial cells. | Mayer H et al. | โ | 2004 | โ |
| Defining a molecular atlas of the hippocampus using DNA microarrays and high-throughput in situ hybridization. | Lein ES et al. | โ | 2004 | โ |
| Defining the spermatogonial stem cell. | Hamra FK et al. | โ | 2004 | โ |
| Development and evaluation of an Arabidopsis whole genome Affymetrix probe array. | Redman JC et al. | โ | 2004 | โ |
| Dissecting progressive stages of 5-fluorouracil resistance in vitro using RNA expression profiling. | Schmidt WM et al. | โ | 2004 | โ |
| DNA microarray analysis of neonatal mouse lung connects regulation of KDR with dexamethasone-induced inhibition of alveolar formation. | Clerch LB et al. | โ | 2004 | โ |
| Erythroid-induced commitment of K562 cells results in clusters of differentially expressed genes enriched for specific transcription regulatory elements. | Addya S et al. | โ | 2004 | โ |
| Expression profiling and identification of novel genes involved in myogenic differentiation. | Tomczak KK et al. | โ | 2004 | โ |
| Expression profiling of the developing and mature Nrl-/- mouse retina: identification of retinal disease candidates and transcriptional regulatory targets of Nrl. | Yoshida S et al. | โ | 2004 | โ |
| Gene and protein profiling of the response of MA-10 Leydig tumor cells to human chorionic gonadotropin. | Li W et al. | โ | 2004 | โ |
| Gene discovery by microarray: identification of novel genes induced during growth factor-mediated muscle cell survival and differentiation. | Kuninger D et al. | โ | 2004 | โ |
| Gene expression profiling after treatment with the histone deacetylase inhibitor trichostatin A reveals altered expression of both pro- and anti-apoptotic genes in pancreatic adenocarcinoma cells. | Moore PS et al. | โ | 2004 | โ |
| Gene expression profiling as a diagnostic tool in acute myeloid leukemia. | Kern W et al. | โ | 2004 | โ |
| GermOnline, a cross-species community knowledgebase on germ cell differentiation. | Wiederkehr C et al. | โ | 2004 | โ |
| GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining. | Masseroli M et al. | โ | 2004 | โ |
| Global gene expression in human myocardium-oligonucleotide microarray analysis of regional diversity and transcriptional regulation in heart failure. | Kรครคb S et al. | โ | 2004 | โ |
| GOAL: automated Gene Ontology analysis of expression profiles. | Volinia S et al. | โ | 2004 | โ |
| GOblet: a platform for Gene Ontology annotation of anonymous sequence data. | Groth D et al. | โ | 2004 | โ |
| Identification of platform-independent gene expression markers of cisplatin nephrotoxicity. | Thompson KL et al. | โ | 2004 | โ |
| Imiquimod treatment induces expression of opioid growth factor receptor: a novel tumor antigen induced by interferon-alpha? | Urosevic M et al. | โ | 2004 | โ |
| Increased measurement accuracy for sequence-verified microarray probes. | Mecham BH et al. | โ | 2004 | โ |
| Induction of genes mediating interferon-dependent extracellular trap formation during neutrophil differentiation. | Martinelli S et al. | โ | 2004 | โ |
| Intrahepatic gene expression during chronic hepatitis C virus infection in chimpanzees. | Bigger CB et al. | โ | 2004 | โ |
| LGI1, a putative tumor metastasis suppressor gene, controls in vitro invasiveness and expression of matrix metalloproteinases in glioma cells through the ERK1/2 pathway. | Kunapuli P et al. | โ | 2004 | โ |
| Microarray expression analysis of gad mice implicates involvement of Parkinson's disease associated UCH-L1 in multiple metabolic pathways. | Bonin M et al. | โ | 2004 | โ |
| Pediatric acute lymphoblastic leukemia (ALL) gene expression signatures classify an independent cohort of adult ALL patients. | Kohlmann A et al. | โ | 2004 | โ |
| Phenotypic anchoring of gene expression changes during estrogen-induced uterine growth. | Moggs JG et al. | โ | 2004 | โ |
| Regulation of ultraviolet light-induced gene expression by gene size. | McKay BC et al. | โ | 2004 | โ |
| The effect of oxythioquinox exposure on normal human mammary epithelial cell gene expression: a microarray analysis study. | Gwinn MR et al. | โ | 2004 | โ |
| The effect of the phytoestrogen coumestrol on the NZB/W F1 murine model of systemic lupus. | Schoenroth LJ et al. | โ | 2004 | โ |
| The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. | Camon E et al. | โ | 2004 | โ |
| The need to decide if all estrogens are intrinsically similar. | Moggs JG et al. | โ | 2004 | โ |
| TIMP1 and SERPIN-A overexpression and TFF3 and CRABP1 underexpression as biomarkers for papillary thyroid carcinoma. | Hawthorn L et al. | โ | 2004 | โ |
| Toxicogenomics of subchronic hexachlorobenzene exposure in Brown Norway rats. | Ezendam J et al. | โ | 2004 | โ |
| Transcriptional signature of an adult brain tumor in Drosophila. | Loop T et al. | โ | 2004 | โ |
| Variations in genome-wide gene expression in identical twins - a study of primary osteoblast-like culture from female twins discordant for osteoporosis. | Mak YT et al. | โ | 2004 | โ |
| A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets. | Schultz N et al. | โ | 2003 | โ |
| ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis. | Zhong S et al. | โ | 2003 | โ |
| DAVID: Database for Annotation, Visualization, and Integrated Discovery. | Dennis G et al. | โ | 2003 | โ |
| DNA microarray profiling of developing PS1-deficient mouse brain reveals complex and coregulated expression changes. | Mirnics ZK et al. | โ | 2003 | โ |
| Effects of clofibric acid on mRNA expression profiles in primary cultures of rat, mouse and human hepatocytes. | Richert L et al. | โ | 2003 | โ |
| Gene expression profiling as a tool for the diagnosis of acute leukemias. | Haferlach T et al. | โ | 2003 | โ |
| Gene expression profiling in adipose tissue indicates different transcriptional mechanisms of liver X receptors alpha and beta, respectively. | Steffensen KR et al. | โ | 2003 | โ |
| GenePublisher: Automated analysis of DNA microarray data. | Knudsen S et al. | โ | 2003 | โ |
| Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes. | Oishi K et al. | โ | 2003 | โ |
| Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. | Mootha VK et al. | โ | 2003 | โ |
| Molecular characterization of acute leukemias by use of microarray technology. | Kohlmann A et al. | โ | 2003 | โ |
| PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. | Mootha VK et al. | โ | 2003 | โ |
| Phylogenetic tree facilitates the understanding of gene expression data on drug metabolizing enzymes obtained by microarray analysis. | Kiyosawa N et al. | โ | 2003 | โ |
| Previously unidentified changes in renal cell carcinoma gene expression identified by parametric analysis of microarray data. | Lenburg ME et al. | โ | 2003 | โ |