Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.
paper
Cited
Public
- Authors
- Krueger, Felix; Andrews, Simon R
- Year
- 2011
- Journal
- Bioinformatics (Oxford, England)
- PMID
- 21493656
- DOI
- 10.1093/bioinformatics/btr167
- PMCID
- PMC3102221
SUMMARY: A combination of bisulfite treatment of DNA and high-throughput sequencing (BS-Seq) can capture a snapshot of a cell's epigenomic state by revealing its genome-wide cytosine methylation at single base resolution. Bismark is a flexible tool for the time-efficient analysis of BS-Seq data which performs both read mapping and methylation calling in a single convenient step. Its output discriminates between cytosines in CpG, CHG and CHH context and enables bench scientists to visualize and interpret their methylation data soon after the sequencing run is completed. AVAILABILITY AND IMPLEMENTATION: Bismark is released under the GNU GPLv3+ licence. The source code is freely available from www.bioinformatics.bbsrc.ac.uk/projects/bismark/.
Bismark's approach to bisulfite mapping and methylation calling. (A) Reads from a BS-Seq experiment are converted into a C-to-T and a G-to-A version and are then aligned to equivalently converted versions of the reference genome. A unique best alignment is then determined from the four parallel alignment processes [in this example, the best alignment has no mismatches and comes from thread (1)]. (B) The methylation state of positions involving cytosines is determined by comparing the read sequence with the corresponding genomic sequence. Depending on the strand a read mapped against this can involve looking for C-to-T (as shown here) or G-to-A substitutions.
1β11 of 11
| Name | Type |
|---|---|
| Bismark local | drug |
| bisulfite | drug |
| bisulfite read local | drug |
| Bowtie | drug |
| BSMAP local | drug |
| BS Seeker local | drug |
| BS-Seq data local | drug |
| cancer | phenotype |
| CHG context local | drug |
| CHH context local | drug |
| CpG dinucleotides local | drug |
| DNA | drug |
| DNA methylation | drug |
| embryonic stem cells local | cohort |
| human genome build NCBI36 local | drug |
| MAQ local | drug |
| plants local | cohort |
| RMAP-bs local | drug |
| sodium bisulfite | drug |
| SRR020138 local | cohort |
| thymine local | drug |
| uracil | drug |
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| Chromosomal instability in human trophoblast stem cells and placentas. | Wang D et al. | β | 2025 | β |
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| Colorectal Adenoma Subtypes Exhibit Signature Molecular Profiles: Unique Insights into the Microenvironment of Advanced Precancerous Lesions for Early Detection Applications. | Mancuso FM et al. | β | 2025 | β |
| Comparative genome analysis and global methylation patterns for epigenetic study in the brackish water flea Diaphanosoma celebensis. | Kim MS et al. | β | 2025 | β |
| Complementary genetic and epigenetic changes facilitate rapid adaptation to multiple global change stressors. | Brennan RS et al. | β | 2025 | β |
| Complementary Roles of DNA Methylation and miRNA in Regulating Gene Expression Under Environmental Stress in Biological Invasions. | Yan W et al. | β | 2025 | β |
| Complete reference genome and pangenome improve genome-wide detection and interpretation of DNA methylation using sequencing and array data. | Dong Z et al. | β | 2025 | β |
| Comprehensive analysis of H3K27me3 LOCKs under different DNA methylation contexts reveal epigenetic redistribution in tumorigenesis. | Liang Y et al. | β | 2025 | β |
| Comprehensive analysis of imprinted genes in citrus endosperm and their contributions to seed development. | He JJ et al. | β | 2025 | β |
| Comprehensive comparison of enzymatic and bisulfite DNA methylation analysis in clinically relevant samples. | Nuttall B et al. | β | 2025 | β |
| Comprehensive methylomes and transcriptomes of tissue-specific and body-size associated genes in miniature pigs. | Kim SJ et al. | β | 2025 | β |
| Comprehensive Multi-omics Analysis of Regulatory Variants for Body Weight in Cattle. | Niu ηηΎ€η Q et al. | β | 2025 | β |
| Computational analysis of DNA methylation from long-read sequencing. | Fu Y et al. | β | 2025 | β |
| Computational Workflow for Genome-Wide DNA Methylation Profiling and Differential Methylation Analysis. | Lin PY et al. | β | 2025 | β |
| Conserved DNA methylation signatures in the prefrontal cortex of female newborn and juvenile guinea pigs following antenatal betamethasone exposure. | Kim B et al. | β | 2025 | β |
| Constructing mRNA-meth-miRNA single-sample networks to reveal the molecular interaction patterns induced by lunar orbital stressors in rice (Oryzasativa). | Zhang Y et al. | β | 2025 | β |
| Control of DNA demethylation by superoxide anion in plant stem cells. | Wang S et al. | β | 2025 | β |
| Coordinated Transcriptomic and Epigenetic Approach Reveals Molecular Features Underlying Natural Mating Ability in Captive Male Giant Pandas. | Yan Z et al. | β | 2025 | β |
| Correlation Analysis of Sperm Cryopreservation Quality with Serum Testosterone and Sperm gDNA Methylation Levels in Xiaoshan Chickens. | Du X et al. | β | 2025 | β |
| Cost-effective promoter methylation analysis via target long-read bisulfite sequencing: a case study in severe preterm birth. | Pereyra S et al. | β | 2025 | β |
| Cost-effective solutions for high-throughput enzymatic DNA methylation sequencing. | Longtin A et al. | β | 2025 | β |
| Cotton transposon-related variome reveals roles of transposon-related variations in modern cotton cultivation. | Liu S et al. | β | 2025 | β |
| CpG methylation changes associated with hyperglycemia in type 1 diabetes occur at angiogenic glomerular and retinal gene loci. | Shao X et al. | β | 2025 | β |
| CRISPRepi: a multi-omic atlas for CRISPR-based epigenome editing. | Shi L et al. | β | 2025 | β |
| crossNN is an explainable framework for cross-platform DNA methylation-based classification of tumors. | Yuan D et al. | β | 2025 | β |
| Cross-species comparison reveals therapeutic vulnerabilities halting glioblastoma progression. | Foerster LC et al. | β | 2025 | β |
| Crosstalk between H3K4me3 and oxidative stress is a potential target for the improvement of ART-derived embryos. | Zhang C et al. | β | 2025 | β |
| Cryopreservation did not affect spermatogonia global methylation profile in Senegalese sole (Solea senegalensis). | Almeida MM et al. | β | 2025 | β |
| Crypt density and recruited enhancers underlie intestinal tumour initiation. | Gaynor L et al. | β | 2025 | β |
| Current Bioinformatics Tools in Precision Oncology. | Wolde T et al. | β | 2025 | β |
| Deciphering differences in DNA methylation and transcriptome profiles of oocytes from pigs with high and low developmental competence. | Abril-ParreΓ±o L et al. | β | 2025 | β |
| Decitabine-induced DNA methylation remodeling reveals targetable biological processes in gilthead seabream pituitary and liver explants. | Perera E et al. | β | 2025 | β |
| Delay in Flowering Time in <i>Arabidopsis thaliana</i> Col-0 Under Water Deficit and in the <i>ddc</i> Triple Methylation Knockout Mutant Is Correlated with Shared Overexpression of <i>BBX16</i> and <i>BBX17</i>. | Vatov E et al. | β | 2025 | β |
| Del lineage of Ty3-Gypsy long terminal repeat retrotransposons drives genome expansion and epigenetically mediated cold responses in Moso bamboo. | Tao GY et al. | β | 2025 | β |
| Detection of an intestinal cell DNA methylation signature in blood samples from neonates with necrotizing enterocolitis. | Frazer L et al. | β | 2025 | β |
| Developmental Behavioural Plasticity and DNA Methylation Patterns in Response to Predation Stress in Trinidadian Guppies. | Fox JA et al. | β | 2025 | β |
| Developmental epigenetic programming by Tet1/3 determines peripheral CD8 T cell fate. | Misel-Wuchter KM et al. | β | 2025 | β |
| Developmental exposure to an environmentally relevant dose of Bisphenol S impairs postnatal growth and disrupts placental transcriptional profile in female rat. | Fudvoye J et al. | β | 2025 | β |
| Developmentally regulated generation of a systemic signal for long-lasting defence priming in tomato. | Stevens K et al. | β | 2025 | β |
| Differential methylation of a retrotransposon upstream of a MYB gene causes variegation of lettuce leaves, which is abolished by the presence of an (AT)<sub>5</sub> repeat in the promoter. | Tao R et al. | β | 2025 | β |
| Digital PCR Assay Utilizing In-Droplet Methylation-Sensitive Digestion for Estimation of Fetal cfDNA From Plasma. | Dannebaum R et al. | β | 2025 | β |
| Dihydrotestosterone-androgen receptor signaling suppresses EBV-positive gastric cancer through DNA demethylation-mediated viral reactivation. | Cho M et al. | β | 2025 | β |
| Disruption of TAD hierarchy promotes LTR co-option in cancer. | Wong EWP et al. | β | 2025 | β |
| Dissecting pre- to post-implantation transition of DNA methylome-transcriptome dynamics in early mammalian development. | Zhu Q et al. | β | 2025 | β |
| Distinct Co-methylation Patterns in African and European Populations and Their Genetic Associations. | Dong Z et al. | β | 2025 | β |
| Divergent DNA methylation dynamics in marsupial and eutherian embryos. | Leeke BJ et al. | β | 2025 | β |
| DMRU: generative deep learning to unravel condition-specific cytosine methylation in plants. | Gupta S et al. | β | 2025 | β |
| DNA glycosylases Ogg1 and Mutyh influence gene expression of PRC2 targets associated with cognition. | Abentung A et al. | β | 2025 | β |
| DNA hypomethylation traits define human regulatory T cells in cutaneous tissue and identify their blood recirculating counterparts. | Beumer N et al. | β | 2025 | β |
| DNA Methylation-Activated LaCOMT1 Expression Promotes Cluster Root Formation of White Lupin via a Mechanism Involving the Melatonin Synthesis. | Zhang Q et al. | β | 2025 | β |
| DNA methylation associated with the serum alanine aminotransferase concentration: evidence from Chinese monozygotic twins. | Li J et al. | β | 2025 | β |
| DNA Methylation at a Single Locus of Human Genome Accurately Recapitulates Episignature of CREBBP-Related Rubinstein-Taybi Syndrome. | Zemlianaia OA et al. | β | 2025 | β |
| DNA methylation-based age estimation from semen: Genome-wide marker identification and model development. | Li Y et al. | β | 2025 | β |
| DNA methylation-based age prediction and sex-specific epigenetic aging in a lizard with female-biased longevity. | Shealy EP et al. | β | 2025 | β |
| DNA methylation controls the expression of tanshinone synthesis genes and the tanshinone accumulation in SalviaΒ miltiorrhiza and Salvia bowleyana. | Liu LW et al. | β | 2025 | β |
| DNA methylation cooperates with genomic alterations during non-small cell lung cancer evolution. | Gimeno-Valiente F et al. | β | 2025 | β |
| DNA methylation dictates histone modifications in developing male germ cells in the mouse. | Sugimoto H et al. | β | 2025 | β |
| DNA methylation drives hematopoietic stem cell aging phenotypes after proliferative stress. | Yanai H et al. | β | 2025 | β |
| DNA methylation dynamics in gymnosperm duplicate genes: implications for genome evolution and stress adaptation. | Huang KY et al. | β | 2025 | β |
| DNA methylation dysregulation patterns in the 1p36 region instability. | Swierkowska-Janc J et al. | β | 2025 | β |
| DNA methylation landscape of Nautilus Pompilius. | Wu Y et al. | β | 2025 | β |
| DNA methylation landscapes before and after Pacific Oyster Mortality Syndrome are different within and between resistant and susceptible Magallana gigas. | Valdivieso A et al. | β | 2025 | β |
| DNA methylation memory of pancreatic acinar-ductal metaplasia transition state altering Kras-downstream PI3K and Rho GTPase signaling in the absence of Kras mutation. | Lo EKW et al. | β | 2025 | β |
| DNA Methylation Patterns Provide Insights into the Epigenetic Regulation of Intersex Formation in the Chinese Mitten Crab (<i>Eriocheir sinensis</i>). | Fang SJ et al. | β | 2025 | β |
| DNA Methylation Reflects Cis-Genetic Differentiation Across the European Crow Hybrid Zone. | Merondun J et al. | β | 2025 | β |
| DNA methylation regulates somatic stress memory and mediates plasticity during acclimation to repeated sulfide stress in Urechis unicinctus. | Zhang W et al. | β | 2025 | β |
| DNA methylation shapes the Polycomb landscape during the exit from naive pluripotency. | Richard Albert J et al. | β | 2025 | β |
| DNA methylomes undergo distinct waves of remodeling during thymic T cell development and do not acquire a proliferation-induced imprint. | Hamm F et al. | β | 2025 | β |
| DNA methyltransferase 1 modulates mitochondrial function through bridging m<sup>5</sup>C RNA methylation. | Wang J et al. | β | 2025 | β |
| DNMT1-mediated regulation of somatostatin-positive interneuron migration impacts cortical architecture and function. | Reichard J et al. | β | 2025 | β |
| Domestication shaped the chromatin landscape of grain amaranth. | Graf C et al. | β | 2025 | β |
| Dose-Dependent Effects of Myo-Inositol on Kainic Acid-Induced Epilepsy: Electrophysiological, Behavioral, Transcriptomic, and DNA Methylome Studies. | Kharkhelauri L et al. | β | 2025 | β |
| Double and single stranded detection of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore sequencing. | Halliwell DO et al. | β | 2025 | β |
| Dual DNA demethylation mechanisms implement epigenetic memory driven by the pioneer factor PAX7. | Harris J et al. | β | 2025 | β |
| Duckweed genomes and epigenomes underlie triploid hybridization and clonal reproduction. | Ernst E et al. | β | 2025 | β |
| DUX4 activates common and context-specific intergenic transcripts and isoforms. | Zheng D et al. | β | 2025 | β |
| Dynamic 3D chromatin organization and epigenetic regulation of gene expression in peanut nodules. | Wang L et al. | β | 2025 | β |
| Early-stage lung adenocarcinoma affects DNA methylation and gene expression in adjacent tissues. | Wu Y et al. | β | 2025 | β |
| Ectopic expression of DNMT3L in human trophoblast stem cells restores features of the placental methylome. | Lea G et al. | β | 2025 | β |
| edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets. | Chen Y et al. | β | 2025 | β |
| Effect of DNA methylation on inhibitor development in people with hemophilia A treated with FVIII concentrates. | Chand H et al. | β | 2025 | β |
| Effects of maternal edible THC consumption on offspring lung growth and function in a rhesus macaque model. | Shorey-Kendrick LE et al. | β | 2025 | β |
| Effects of subclinical hypothyroidism during pregnancy on mtDNA methylation in the brain of rat offspring. | Xie L et al. | β | 2025 | β |
| Elevated EGR1 binding at enhancers in excitatory neurons correlates with neuronal subtype-specific epigenetic regulation. | Yin L et al. | β | 2025 | β |
| Embryonic temperature influences transcriptomic and methylation profiles in the liver of juvenile largemouth bass. | Lin Z et al. | β | 2025 | β |
| Embryo vitrification disturbs the pre-implantation DNA demethylation process and affects hepatic functions to threaten long-term metabolic health in mice. | Ying Y et al. | β | 2025 | β |
| EM-DeepSD: A Deep Neural Network Model Based on Cell-Free DNA End-Motif Signal Decomposition for Cancer Diagnosis. | Zhao ZY et al. | β | 2025 | β |
| Enhancing the sensitivity of non-invasive cervical cancer detection using CpG methylation haplotype profiling. | Cheishvili D et al. | β | 2025 | β |
| EpiAge: a next-generation sequencing-based <i>ELOVL2</i> epigenetic clock for biological age assessment in saliva and blood across health and disease. | Cheishvili D et al. | β | 2025 | β |
| Epiallelic variation at the transcription factor MYBA1 promoter contributes to color differences of berry flesh in grapevine. | Kong J et al. | β | 2025 | β |
| Epigenetic and experimental approaches influencing non-coding RNAs. | Vijay U et al. | β | 2025 | β |
| Epigenetic and transcriptomic alterations precede amyloidosis in the Alzheimer's disease App<sup>NL-G-F</sup> knock-in mouse model. | Okhovat M et al. | β | 2025 | β |
| Epigenetic editing at individual age-associated CpGs affects the genome-wide epigenetic aging landscape. | Liesenfelder S et al. | β | 2025 | β |
| Epigenetic insights into fertility: involvement of immune cell methylation in dairy cows reproduction. | Bouzeraa L et al. | β | 2025 | β |
| Epigenetic landscape of hormone-independent sexual dimorphism and characterization of canine XIST. | Oh SJ et al. | β | 2025 | β |
| Epigenetic maps of pearl millet reveal a prominent role for CHH methylation in regulating tissue-specific gene expression. | Luo L et al. | β | 2025 | β |
| Epigenetic motifs distinguishing endogenous from exogenous retroviral integrants. | LaMere S et al. | β | 2025 | β |
| Epigenetic Plasticity Is Likely to Exacerbate Climate Change Vulnerability. | Chen B et al. | β | 2025 | β |
| Epigenetic priming of mammalian embryonic enhancer elements coordinates developmental gene networks. | Todd CD et al. | β | 2025 | β |
| Epigenetic regulation modulates seasonal temperature-dependent growth of soybean in southern China. | Fang Y et al. | β | 2025 | β |
| Epigenetic regulation of HOXA3 and its impact on oral squamous cell carcinoma progression. | Padam KSR et al. | β | 2025 | β |
| Epigenetic remodeling of sheep oocytes and embryos induced by maternal methionine supplementation. | Townsend J et al. | β | 2025 | β |
| Epigenetic Responses to Anthropogenic Versus Natural Sources of Oil Exposure Differ in Wild Arctic Seabird Populations. | Ho WZ et al. | β | 2025 | β |
| Epigenetics-Driven Appetite System Disorders and PI3K/AKT Signaling Activation Mediate a Weight Gain Resistance Phenotype Induced by a High-Fat Diet in Male Rats. | Li MJ et al. | β | 2025 | β |
| Epigenetic state and gene expression remain stable after CRISPR/Cas-mediated chromosomal inversions. | Khosravi S et al. | β | 2025 | β |
| Epigenome profiling reveals distinctive regulatory features and cis-regulatory elements in pepper. | Yang H et al. | β | 2025 | β |
| Epigenome-wide association study of Chinese monozygotic twins identifies DNA methylation loci associated with estimated glomerular filtration rate. | Qi X et al. | β | 2025 | β |
| Epigenomic profiling of papillary thyroid carcinoma reveals distinct subtypes with clinical implications. | Lee Y et al. | β | 2025 | β |
| Establishment of a forward genetic screening system to discover new proteins associated with DNA demethylation pathway. | Lu C et al. | β | 2025 | β |
| Establishment of neuronal and glial competence of neural stem cells requires distinct enzymatic activities of TET enzymes. | Ebert BC et al. | β | 2025 | β |
| Evaluation of Illumina and Oxford Nanopore Sequencing for the Study of DNA Methylation in Alzheimer's Disease and Frontotemporal Dementia. | Pagano L et al. | β | 2025 | β |
| Evolutionary lineage-specific genomic imprinting at the ZNF791 locus. | Ahn J et al. | β | 2025 | β |
| Excess prenatal folic acid supplementation alters cortical DNA methylation and gene expression networks. | Haghani V et al. | β | 2025 | β |
| Exercise intensity and training alter the innate immune cell type and chromosomal origins of circulating cell-free DNA in humans. | Rodrigues KB et al. | β | 2025 | β |
| Extensive folding variability between homologous chromosomes in mammalian cells. | Irastorza-Azcarate I et al. | β | 2025 | β |
| Extensive N4 cytosine methylation is essential for Marchantia sperm function. | Walker J et al. | β | 2025 | β |
| FAIRification of the DMRichR pipeline: advancing epigenetic research on environmental and evolutionary model organisms. | Salam W et al. | β | 2025 | β |
| Fast and efficient method for parallel construction of targeted exome and methylome single-stranded DNA sequencing libraries. | Kim E et al. | β | 2025 | β |
| Features of DNA methylome in Capsicum spp. | Liu Y et al. | β | 2025 | β |
| From juvenile to adult: investigating miRNAs, gene expression, and the juvenile cone in olive development. | Romero-RodrΓguez P et al. | β | 2025 | β |
| FTDC1/2, oocyte-specific cofactors of DNMT1 required for epigenetic regulation and embryonic development. | Li C et al. | β | 2025 | β |
| Gene editing of CD3 epsilon to redirect regulatory TΒ cells for adoptive TΒ cell transfer. | Du W et al. | β | 2025 | β |
| Generation of allogeneic CAR-NKT cells from hematopoietic stem and progenitor cells using a clinically guided culture method. | Li YR et al. | β | 2025 | β |
| Genetic and chromatin regulation of Pvt1 monoallelic expression. | Luong C et al. | β | 2025 | β |
| Genetic and Epigenetic Changes in <i>Arabidopsis thaliana</i> Exposed to Ultraviolet-C Radiation Stress for 25 Generations. | Virgen AL et al. | β | 2025 | β |
| Genetic Architecture of Immune Cell DNA Methylation in the Rhesus Macaque. | Costa CE et al. | β | 2025 | β |
| Genetic Mechanisms and Adaptive Benefits of Anthocyanin Red Stigmas in a Wind-Pollinated Tree. | Wang WH et al. | β | 2025 | β |
| Genetic regulation of sperm DNA methylation in cattle through meQTL mapping. | FouΓ©rΓ© C et al. | β | 2025 | β |
| Genome assembly and DNA methylation variation in an epimutant population of hybrid poplar clone NL895. | He J et al. | β | 2025 | β |
| Genome-wide demethylation and targeted remethylation during metamorphosis in the jewel wasp Nasonia vitripennis. | Thomas CL et al. | β | 2025 | β |
| Genome-wide DNA methylation analysis of sorghum leaves following foreign GA3 exposure under salt stress. | Wu Y et al. | β | 2025 | β |
| Genome-Wide Identification of DNA Methyltransferase and Demethylase in <i>Populus</i> sect. Turanga and Their Potential Roles in Heteromorphic Leaf Development in <i>Populus euphratica</i>. | Qiu C et al. | β | 2025 | β |
| Genomic and epigenomic insight into giga-chromosome architecture and adaptive evolution of royal lily (Lilium regale). | Sun J et al. | β | 2025 | β |
| Genomic and Methylomic Signatures Associated With the Maintenance of Genome Stability and Adaptive Evolution in Two Closely Allied Wolf Spiders. | Zuo Q et al. | β | 2025 | β |
| Genomic imprinting at a porcine ZNF locus via a canonical imprinting mechanism. | Ahn J et al. | β | 2025 | β |
| Germline variants in <i>UHRF1</i> are associated with multilocus imprinting disturbance in humans and mice. | Ochoa E et al. | β | 2025 | β |
| GhDMT7-mediated DNA methylation dynamics enhance starch and sucrose metabolism pathways to confer salt tolerance in cotton. | Yang Z et al. | β | 2025 | β |
| Glial and neuronal cell-free DNA in plasma of sporadic bvFTD and late onset primary psychiatric disease patients. | Chatterton Z et al. | β | 2025 | β |
| Glial reactivity and cognitive decline follow chronic heterochromatin loss in neurons. | Newman AG et al. | β | 2025 | β |
| Glyphosate-Based Herbicide Stress During Pregnancy Impairs Intestinal Development in Newborn Piglets by Modifying DNA Methylation. | Bai G et al. | β | 2025 | β |
| Grapevine cell response to carbon deficiency requires transcriptome and methylome reprogramming. | Berger MMJ et al. | β | 2025 | β |
| Green forage impacts on the DNA methylation in the ruminal wall of Italian mediterranean dairy buffaloes. | Fioriniello S et al. | β | 2025 | β |
| Green revolution gene drives adaptation of Arabidopsis to the extremely high altitude. | Hou XH et al. | β | 2025 | β |
| H3K36 Methylation as a Guardian of Epigenome Integrity. | Padilla R et al. | β | 2025 | β |
| Haplotype-resolved, gap-free genome assemblies provide insights into the divergence between Asian and European pears. | Sun M et al. | β | 2025 | β |
| Heat stress response and transposon control in plant shoot stem cells. | Nguyen VH et al. | β | 2025 | β |
| Heat stress responses mediated by N6-methyladenine DNA methylation in maize. | Guo W et al. | β | 2025 | β |
| Highly dynamic supernumerary mini-chromosomes in a Magnaporthe oryzae strain contributes to cellular variance of genomic content. | Lin G et al. | β | 2025 | β |
| HLA matching or CRISPR editing of HLA class I/II enables engraftment and effective function of allogeneic human regulatory T cell therapy in a humanized mouse transplantation model. | McCallion O et al. | β | 2025 | β |
| Homeostasis of DNA Hemi-Methylation in Arabidopsis through Methylation Maintenance, DNA Replication, and Nucleosome Positioning Mechanisms. | Chen H et al. | β | 2025 | β |
| Human brain aging is associated with dysregulation of cell type epigenetic identity. | Jeong H et al. | β | 2025 | β |
| Identification of 17 novel epigenetic biomarkers associated with anxiety disorders using differential methylation analysis followed by machine learning-based validation. | Kwon Y et al. | β | 2025 | β |
| Identification of diagnostic DNA methylation markers in the blood of Japanese Alzheimer's disease patients using methylation capture sequencing. | Mitsumori R et al. | β | 2025 | β |
| Identification of reactive CpGs and RNA expression in early COVID-19 through cis-eQTM analysis reflecting disease severity and recovery. | Ryu H et al. | β | 2025 | β |
| iDog: a multi-omics resource for canids study. | Liu Y et al. | β | 2025 | β |
| Impact of DNA methylation on digestive and metabolic gene expression in red pandas (Ailurus fulgens) during the transition from milk to bamboo diet. | Chen L et al. | β | 2025 | β |
| Impact of excess sugar on the whole genome DNA methylation pattern in human sperm. | JΓΆnsson J et al. | β | 2025 | β |
| Imprinting and DNA Methylation in Water Lily Endosperm: Implications for Seed Evolution. | Povilus RA et al. | β | 2025 | β |
| Improved circulating tumor DNA identification for detection of esophageal squamous cell carcinoma by enzymatic methyl sequencing and hybrid neural network. | Shen J et al. | β | 2025 | β |
| Incorporating local ancestry information to predict genetically associated DNA methylation in admixed populations. | Cheng Y et al. | β | 2025 | β |
| INCREASED DNA METHYLATION 3 forms a potential chromatin remodelling complex with HAIRPLUS to regulate DNA methylation and trichome development in tomato. | NyikΓ³ T et al. | β | 2025 | β |
| Increased local DNA methylation disorder in AMLs with DNMT3A-destabilizing variants and its clinical implication. | Lee D et al. | β | 2025 | β |
| Independent Avian Epigenetic Clocks for Ageing and Development. | Haller A et al. | β | 2025 | β |
| Inheritance of acquired adaptive cold tolerance in rice through DNA methylation. | Song X et al. | β | 2025 | β |
| Inhibition of PRC2 enables self-renewal of blastoid-competent naive pluripotent stem cells from chimpanzee. | Huang T et al. | β | 2025 | β |
| Integrated Analysis of Somatic DNA Variants and DNA Methylation of Tumor Suppressor Genes in Colorectal Cancer. | Nishiki H et al. | β | 2025 | β |
| Integrated genomic-wide methylomic, transcriptomic, and physiological analysis revealed the molecular mechanism of light drought regulating early flowering of grapefruit (Citrus paradisi L.). | Huang B et al. | β | 2025 | β |
| Integrated multi-omics profiling reveals the role of the DNA methylation landscape in shaping biological heterogeneity and clinical behaviour of metastatic melanoma. | Anichini A et al. | β | 2025 | β |
| Integrated omics reveals disease-associated radial glia-like cells with epigenetically dysregulated interferon response in multiple sclerosis. | Park B et al. | β | 2025 | β |
| Integrated transcriptome and DNA methylome analysis reveal the browning mechanism in Agaricus bisporus. | Li G et al. | β | 2025 | β |
| Integrating multi-omics features enables non-invasive early diagnosis and treatment response prediction of diffuse large B-cell lymphoma. | Zhang W et al. | β | 2025 | β |
| Integration of DNA Methylome and Transcriptome Analysis to Identify Novel Epigenetic Targets in the Acute Kidney Injury-Chronic Kidney Disease Transition. | Zheng X et al. | β | 2025 | β |
| Intergenerational effects of maternal rate of body weight gain on the multi-omics hepatic profiles of bovine fetuses. | Anas M et al. | β | 2025 | β |
| Interrogating subclonal heterogeneity of liver cancer with single-cell multi-omics analysis. | Zhang L et al. | β | 2025 | β |
| Intraindividual epigenetic heterogeneity underlying phenotypic subtypes of advanced prostate cancer. | Mizuno K et al. | β | 2025 | β |
| Investigating Single-Molecule Molecular Inversion Probes for Medium-Scale Targeted DNA Methylation Analysis. | Simons RB et al. | β | 2025 | β |
| In vitro processes alter the embryonic disc epigenome and transcriptome in the pre-implantation elongated bovine embryoβ . | Behrens T et al. | β | 2025 | β |
| iPSCs and iPSC-derived cells as a model of human genetic and epigenetic variation. | Quaid K et al. | β | 2025 | β |
| ISDH-seq: a robust methodology for profiling and characterization of open chromatin. | Li Z et al. | β | 2025 | β |
| Lactuca super-pangenome provides insights into lettuce genome evolution and domestication. | Cao S et al. | β | 2025 | β |
| Late-Life Short-Term Dietary Restriction Improves Intestinal Stem Cell Function and Alters Intestinal Stem Cell Deoxyribonucleic Acid Methylation in Mice. | Kurup K et al. | β | 2025 | β |
| LEC2 induces somatic cell reprogramming through epigenetic activation of plant cell totipotency regulators. | Peng J et al. | β | 2025 | β |
| Linker histones enhance robustness in diurnal transcription dynamics. | Rutowicz K et al. | β | 2025 | β |
| LKB1 inactivation promotes epigenetic remodeling-induced lineage plasticity and antiandrogen resistance in prostate cancer. | Li F et al. | β | 2025 | β |
| Long-read detection of transposable element mobilization in the soma of hypomethylated Arabidopsis thaliana individuals. | Movilli A et al. | β | 2025 | β |
| Long-term outcome of oesophageal atresia in adolescence (TransEAsome): a national French cohort study protocol. | Leroy M et al. | β | 2025 | β |
| Loss of function of chromatin remodeler OsCLSY4 leads to RdDM-mediated mis-expression of endosperm-specific genes affecting grain qualities. | Pal AK et al. | β | 2025 | β |
| Loss of <i>Myostatin</i> Shapes the Transcriptomic and Epigenetic Landscapes Across Multiple Muscle Types in Cattle. | Hai C et al. | β | 2025 | β |
| <i>Arabidopsis thaliana</i> Roots Exposed to Extracellular Self-DNA: Evidence of Epigenetic Effects. | Ronchi A et al. | β | 2025 | β |
| <i>BDNF</i> Val66Met Genotype, DNA Methylation, mRNA, and Protein Levels as Potential Blood-Based Biomarkers for Dementia and Cognitive Decline. | Tudor L et al. | β | 2025 | β |
| Major depressive disorder and anti-depressant therapy markedly alters the human follicular niche DNA methylome. | Fuchs Weizman N et al. | β | 2025 | β |
| Majority of the Highly Variable NLRs in Maize Share Genomic Location and Contain Additional Target-Binding Domains. | Prigozhin DM et al. | β | 2025 | β |
| Mammary gland multi-omics data reveals new genetic insights into milk production traits in dairy cattle. | Cai W et al. | β | 2025 | β |
| Maternal loss of mouse Nlrp2 alters the transcriptome and DNA methylome in GV oocytes and impairs zygotic genome activation in embryos. | Anvar Z et al. | β | 2025 | β |
| MemorySeq identifies heritable epigenetic phenotypes that initiate cell culture stress tolerance in CHO cells. | Grissom S et al. | β | 2025 | β |
| Methylation Data Analysis and Interpretation. | Zhu Y et al. | β | 2025 | β |
| Methylation reference datasets from quartet DNA materials for benchmarking epigenome sequencing. | Guo X et al. | β | 2025 | β |
| Methylation sequencing enhances interpretation of clonal hematopoiesis dynamics. | Parker AC et al. | β | 2025 | β |
| MethylBERT enables read-level DNA methylation pattern identification and tumour deconvolution using a Transformer-based model. | Jeong Y et al. | β | 2025 | β |
| Methyl-CODEC enables simultaneous methylation and duplex sequencing. | Liu R et al. | β | 2025 | β |
| methylGrapher: genome-graph-based processing of DNA methylation data from whole genome bisulfite sequencing. | Zhang W et al. | β | 2025 | β |
| Methylome analysis in long-lived men deciphers DNA methylation modifications associated with male longevity in humans. | Xiao FH et al. | β | 2025 | β |
| Methylomes Reveal Recent Evolutionary Changes in Populations of Two Plant Species. | Korfmann K et al. | β | 2025 | β |
| Methylomic Signature and Epigenetic Damage Modulation of Bronte Pistachio (<i>Pistacia vera</i> L.) Hydrophilic Extract in Differentiated CaCo-2 Cells. | Cruciata I et al. | β | 2025 | β |
| Methylseq, single-nuclei RNAseq, and discovery proteomics identify pathways associated with nephron-deficit CKD in the HSRA rat model. | Milner AR et al. | β | 2025 | β |
| Microplastic exposure is associated with epigenomic effects in the model organism Pimephales promelas (fathead minnow). | Wade MJ et al. | β | 2025 | β |
| MicroRNA bioinformatics in precision oncology: an integrated pipeline from NGS to AI-based target discovery. | Dey M et al. | β | 2025 | β |
| Mitigating Cell Cycle Effects in Multi-Omics Data: Solutions and Analytical Frameworks. | Nie R et al. | β | 2025 | β |
| Mitochondrial DNA and the largest nuclear-mitochondrial DNA in Arabidopsis can be separated by their methylation levels. | Zhong Y et al. | β | 2025 | β |
| Mitochondrial DNA methylation is involved in contrast-induced renal tubular epithelial cell injury. | Lv M et al. | β | 2025 | β |
| Mitochondrial methylcytosines as blood-based biomarkers for Alzheimer's disease dementia prognosis. | GascΓ³n-Bayarri J et al. | β | 2025 | β |
| Modulating immune cell fate and inflammation through CRISPR-mediated DNA methylation editing. | ValcΓ‘rcel G et al. | β | 2025 | β |
| Molecular Classification of Endometrial Cancers Using an Integrative DNA Sequencing Panel. | Kim SR et al. | β | 2025 | β |
| Molecular Portraits of Social Adversity in Breast Cancer: Neighborhood Disadvantage Is Associated with Epigenetic Deregulation of Key Oncogenic Pathways. | Telonis AG et al. | β | 2025 | β |
| Molecular regulation of whole genome DNA methylation in heat stress response of dairy cows. | Yang Y et al. | β | 2025 | β |
| Molecular signatures of invasive and non-invasive pituitary adenomas: a comprehensive analysis of DNA methylation and gene expression. | Chen Y et al. | β | 2025 | β |
| mop1 affects maize recombination landscapes by modulating methylation of MITEs near genes in open chromatin. | Hasan MM et al. | β | 2025 | β |
| Motif distribution and DNA methylation underlie distinct Cdx2 binding during development and homeostasis. | Lorzadeh A et al. | β | 2025 | β |
| Mouse metastable epialleles are extremely rare. | Gunasekara CJ et al. | β | 2025 | β |
| MUC1 promoter methylation pattern diversity and its association with TET3 expression and prognosis in cholangiocarcinoma. | Yokoyama S et al. | β | 2025 | β |
| Multi-dimensional epigenomic dynamics converge on H3K4-mediated regulation of low-CO<sub>2</sub> adaptation in Nannochloropsis oceanica. | Gong Y et al. | β | 2025 | β |
| Multifaceted regulation of the HOX cluster and its implications in oral cancer. | Padam KSR et al. | β | 2025 | β |
| Multi-metric locality sensitive hashing enhances alignment accuracy of bisulfite sequencing reads: BisHash. | Nikaein H et al. | β | 2025 | β |
| Multimodal omics analysis of the EGFR signaling pathway in non-small cell lung cancer and emerging therapeutic strategies. | Li Y et al. | β | 2025 | β |
| Multi-omic analysis of hepatocellular carcinoma reveals aberrant cis-regulatory changes and dysregulated retrotransposons with prognostic potential. | Cheng CCY et al. | β | 2025 | β |
| Multi-omic integration of single-cell data uncovers methylation profiles of super-enhancers in skeletal muscle stem cells. | Zeng A et al. | β | 2025 | β |
| Multiβomics analysis identifies different molecular subtypes with unique outcomes in early-stage poorly differentiated lung adenocarcinoma. | Liu B et al. | β | 2025 | β |
| Multiomics Analysis of Skeletal Muscle Identifies Dysregulation of Hypoxia-Induced Genes in Peripheral Artery Disease. | Ismaeel A et al. | β | 2025 | β |
| Multi-Omics Analysis of the Epigenetic Effects of Inflammation in Murine Type II Pneumocytes. | Fernandez JA et al. | β | 2025 | β |
| Multi-Omics-Based Characterization of DNA Methylation Episignatures for Papillary Thyroid Cancer in a Chinese Population. | Ruan X et al. | β | 2025 | β |
| Multi-omics dissection of the genetic regulation underlying fatty acid composition in cattle. | Zhang T et al. | β | 2025 | β |
| Multiomics Reveal Associations Between CpG Methylation, Histone Modifications and Transcription in a Species That has Lost DNMT3, the Colorado Potato Beetle. | LΓ€nger ZM et al. | β | 2025 | β |
| Multiomics Signature Reveals Network Regulatory Mechanisms in a CRC Continuum. | Higareda-Almaraz JC et al. | β | 2025 | β |
| Multiplexed epigenetic memory editing using CRISPRoff sensitizes glioblastoma to chemotherapy. | Lin K et al. | β | 2025 | β |
| Multiplexing and massive parallel sequencing of targeted DNA methylation to predict chronological age. | Zhu B et al. | β | 2025 | β |
| Nanopore sequencing and multiomics reveal predictable non-coding RNA activation in DNA methylation deficient Arabidopsis thaliana. | Shi W et al. | β | 2025 | β |
| Neurodevelopmental outcome at 5 to 6Β years of age of an early intervention program in preterm infants. | Fontana C et al. | β | 2025 | β |
| Nitric oxide inhibits ten-eleven translocation DNA demethylases to regulate 5mC and 5hmC across the genome. | Palczewski MB et al. | β | 2025 | β |
| NKX2-5/LHX1 and UHRF1 Establishing a Positive Feedback Regulatory Circuitry Drives Esophageal Squamous Cell Carcinoma through Epigenetic Dysregulation. | Li X et al. | β | 2025 | β |
| Non-canonical functions of DNMT3A in hematopoietic stem cells regulate telomerase activity and genome integrity. | Xavier Raj I et al. | β | 2025 | β |
| Non-concordant epigenetic and transcriptional responses to acute thermal stress in western mosquitofish (Gambusia affinis). | Ren X et al. | β | 2025 | β |
| NSUN2-mediated HCV RNA m5C Methylation Facilitates Viral RNA Stability and Replication. | Li ZL et al. | β | 2025 | β |
| Nucleotides as an Anti-Aging Supplementation in Older Adults: A Randomized Controlled Trial (TALENTs study). | Wang S et al. | β | 2025 | β |
| OGT prevents DNA demethylation and suppresses the expression of transposable elements in heterochromatin by restraining TET activity genome-wide. | Sepulveda H et al. | β | 2025 | β |
| OpTiles: an R package for adaptive tiling and methylation variability profiling. | Migliaccio G et al. | β | 2025 | β |
| Overcoming ovarian cancer resistance and evasion to CAR-T cell therapy by harnessing allogeneic CAR-NKT cells. | Li YR et al. | β | 2025 | β |
| Pan-Cancer Detection Through DNA Methylation Profiling Using Enzymatic Conversion Library Preparation with Targeted Sequencing. | Qvick A et al. | β | 2025 | β |
| Pangenome analysis provides insights into legume evolution and breeding. | Wang L et al. | β | 2025 | β |
| Pangenomic context reveals the extent of intraspecific plant NLR evolution. | Teasdale LC et al. | β | 2025 | β |
| Pan-phylum genomes of hornworts reveal conserved autosomes but dynamic accessory and sex chromosomes. | Schafran P et al. | β | 2025 | β |
| Partial redundancy buffers deleterious effects of mutating DNA methyltransferase 1-1 (MET1-1) in polyploid wheat. | Burrows S et al. | β | 2025 | β |
| Perinatal Exposure to Lead or Diethylhexyl Phthalate in Mice: Sex-Specific Effects on Cardiac DNA Methylation and Gene Expression across Time. | Wang K et al. | β | 2025 | β |
| Peripheral Blood DNA Methylation Changes in Response to <i>Centella asiatica</i> Treatment in Aged Mice. | Monestime O et al. | β | 2025 | β |
| Phased epigenomics and methylation inheritance in a historical Vitis vinifera hybrid. | Cochetel N et al. | β | 2025 | β |
| Pig and quail CpG methylation datasets from short and long read sequencing technologies. | Terzian P et al. | β | 2025 | β |
| PIGOME: An Integrated and Comprehensive Multi-omics Database for Pig Functional Genomics Studies. | Han G et al. | β | 2025 | β |
| Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard. | Lin YY et al. | β | 2025 | β |
| PlantDeepMeth: A Deep Learning Model for Predicting DNA Methylation States in Plants. | Guo Z et al. | β | 2025 | β |
| Plasma cell-free DNA methylation-based prognosis in metastatic castrate-resistant prostate cancer. | Wong J et al. | β | 2025 | β |
| Positioning of sperm tail longitudinal columns depends on NSUN7, an RNA-binding protein destabilizing elongated spermatid transcripts. | Guseva EA et al. | β | 2025 | β |
| PpNAC transcription factors regulate ENDOPOLYGALACTURONASE alleles and control peach fruit texture and stone adhesion. | Zhao Y et al. | β | 2025 | β |
| Pre-Conception Maternal Obesity Confers Autism Spectrum Disorder-like Behaviors in Mice Offspring Through Neuroepigenetic Dysregulation. | Allan NP et al. | β | 2025 | β |
| Predicting differentially methylated cytosines in TET and DNMT3 knockout mutants via a large language model. | Sereshki S et al. | β | 2025 | β |
| Pre-existing DNA methylation signatures in the prefrontal cortex of alcohol-naΓ―ve nonhuman primates define neural vulnerability for future risky ethanol consumption. | Cervera-Juanes RP et al. | β | 2025 | β |
| Preliminary Analysis of Placental DNA Methylation Profiles in Piglets with Extreme Birth Weight Variations. | Zhang Z et al. | β | 2025 | β |
| Preventing CpG hypermethylation in oocytes safeguards mouse development. | Kawamura YK et al. | β | 2025 | β |
| Programmable epigenome editing by transient delivery of CRISPR epigenome editor ribonucleoproteins. | Xu D et al. | β | 2025 | β |
| Protocol update to: High-throughput scNMT protocol for multiomics profiling of single cells from mouse brain and pancreatic organoids. | Cerrizuela S et al. | β | 2025 | β |
| Rapid human oogonia-like cell specification via transcription factor-directed differentiation. | Pierson Smela M et al. | β | 2025 | β |
| Rapid Neural DNA Methylation Responses to Predation Stress in Trinidadian Guppies. | Fox JA et al. | β | 2025 | β |
| rDNAcaller: a fast and robust pipeline to call ribosomal DNA variants. | Ramirez JM et al. | β | 2025 | β |
| Read-level DNA methylation deconvolution enhances circulating tumor DNA detection. | Qi T et al. | β | 2025 | β |
| RECAP-seq: restriction enzyme-based CpG-methylated fragment amplification for early cancer detection. | Shin D et al. | β | 2025 | β |
| Reconfiguration of DNA methylation at growth resumption after winter dormancy in Kiwifruit. | Wu R et al. | β | 2025 | β |
| Recurrent spontaneous miscarriages from sperm after ABVD chemotherapy in a patient with Hodgkin's lymphoma: sperm DNA and methylation profiling. | Lecuyer G et al. | β | 2025 | β |
| Reducing functionally defective old HSCs alleviates aging-related phenotypes in old recipient mice. | Wang Y et al. | β | 2025 | β |
| regionalpcs improve discovery of DNA methylation associations with complex traits. | Eulalio T et al. | β | 2025 | β |
| Regulation of DNA Methylation in Peanut Leaves and Roots: Uncovering the Molecular Mechanisms for Increased Yield After Single-Seed Sowing. | Fan S et al. | β | 2025 | β |
| Regulation of transcriptional homeostasis by DNA methylation upon genome duplication in pak choi. | Ma M et al. | β | 2025 | β |
| Reprogramming of H3K36me2 guides lineage-specific post-implantation de novo DNA methylation. | Lu X et al. | β | 2025 | β |
| Rescuing DNMT1 fails to fully reverse the molecular and functional repercussions of its loss in mouse embryonic stem cells. | Elder E et al. | β | 2025 | β |
| Retinoic acid and ascorbate synergize to suppress myeloid leukemia via TET2 activation. | Leesang TE et al. | β | 2025 | β |
| Ribosome dysregulation and intervention in age-related infertility. | Li J et al. | β | 2025 | β |
| RID is required for both repeat-induced point mutation and nucleation of a novel transitional heterochromatic state for euchromatic repeats. | He Z et al. | β | 2025 | β |
| RMapAlign3N: fast mapping of 3N-Reads. | MΓΌller A et al. | β | 2025 | β |
| Role of mitochondrial dynamics in mouse preimplantation embryonic development and its molecular mechanisms. | Sun X et al. | β | 2025 | β |
| Sclerotic skin in Hutchinson-Gilford progeria syndrome: Reversible senescent phenotype. | Kwak D et al. | β | 2025 | β |
| Selection and Validation of Reference Genes for RT-qPCR in Protonemal Tissue of the Desiccation-Tolerant Moss <i>Pseudocrossidium replicatum</i> Under Multiple Abiotic Stress Conditions. | Nava-Nolazco RM et al. | β | 2025 | β |
| Selective identification of epigenetic regulators at methylated genomic sites by SelectID. | Qian W et al. | β | 2025 | β |
| SETD1B-mediated broad H3K4me3 controls proper temporal patterns of gene expression critical for spermatid development. | Lin Z et al. | β | 2025 | β |
| Sex-Chromosome-Dependent Ageing in Female Heterogametic Methylomes. | Tangili M et al. | β | 2025 | β |
| Sex-specific DNA methylation signatures of autism spectrum disorder from whole genome bisulfite sequencing of newborn blood. | Mouat JS et al. | β | 2025 | β |
| Sexual dimorphism in the DNA methylation pattern after immune stimulation in the zebrafish (<i>Danio rerio</i>) gonads. | Salazar M et al. | β | 2025 | β |
| Sexual epigenetics: genome-wide analysis revealed differential DNA methylation in the vector tick Haemaphysalis longicornis. | Wang H et al. | β | 2025 | β |
| Short Communication: The imprinted and paternally expressed MIMT1 lncRNA ortholog in pigs. | Ahn J et al. | β | 2025 | β |
| Short-term transcriptional memory and association-forming ability of tomato plants in response to ultrasound and drought stress stimuli. | Farkas D et al. | β | 2025 | β |
| Silencing <i>TET1</i> expression alters the epigenomic landscape and amplifies transcriptomic responses to allergen in airway epithelial cells. | Brown AP et al. | β | 2025 | β |
| Simulation-guided pan-cancer analysis identifies a novel regulator of CpG island hypermethylation heterogeneity. | Zhang X et al. | β | 2025 | β |
| Simultaneous RNA Sequencing and DNA Methylation Profiling Reveals Neural Mechanisms That Regulate Sensitive Period Behavioral Learning. | London SE et al. | β | 2025 | β |
| Single-cell multiomic analysis reveals methylome and transcriptome deviations following oocyte maturation in vitro. | Benedetti C et al. | β | 2025 | β |
| Single-cell omics: experimental workflow, data analyses and applications. | Sun F et al. | β | 2025 | β |
| SMCHD1 maintains heterochromatin, genome compartments and epigenome landscape in human myoblasts. | Huang Z et al. | β | 2025 | β |
| Spatiotemporal methylome remodeling during fiber differentiation in Gossypium hirsutum. | Yu Z et al. | β | 2025 | β |
| Sperm DNA methylation landscape and its links to male fertility in a non-model teleost using EM-seq. | Pappas F et al. | β | 2025 | β |
| Stable preservation and recovery of methylation marks from FTA elute cards in species with nucleated red blood cells using a customized DNA extraction method. | Gerber L et al. | β | 2025 | β |
| Stage-specific transcriptomic and DNA methylation responses to triploidy in European sea bass embryos and larvae. | Beato S et al. | β | 2025 | β |
| Stronger Parental Than Temperature Effects on Methylation in Juvenile Brown Trout (<i>Salmo trutta</i>). | Liu S et al. | β | 2025 | β |
| Structural DNMT-nucleosome contacts are related to DNA methylation patterns. | George K et al. | β | 2025 | β |
| Sub-lethal insecticide stress alters epimutation rate but not genetic mutation rate in the pest insect Myzus persicae. | Hunt BJ et al. | β | 2025 | β |
| Suppression of ERK signalling promotes pluripotent epiblast in the human blastocyst. | Simon CS et al. | β | 2025 | β |
| Symmetric adenine methylation is an essential DNA modification in the early-diverging fungus Rhizopus microsporus. | Lax C et al. | β | 2025 | β |
| Targeted long-read methylation analysis using hybridization capture suitable for clinical specimens. | Kunigo K et al. | β | 2025 | β |
| Targeting SLC7A11-mediated cysteine metabolism for the treatment of trastuzumab-resistant HER2-positive breast cancer. | Hua Y et al. | β | 2025 | β |
| T-bet+ CXCR3+ B cells drive hyperreactive B-T cell interactions in multiple sclerosis. | Jelcic I et al. | β | 2025 | β |
| Temporal and regional X-linked gene reactivation in the mouse germline reveals site-specific retention of epigenetic silencing. | Roidor C et al. | β | 2025 | β |
| TET3 regulates hematopoietic stem cell homeostasis during embryonic and adult hematopoiesis. | Ketchum HC et al. | β | 2025 | β |
| The 5-methylcytosine DNA glycosylase ROS1 prevents paternal genome hypermethylation in Arabidopsis endosperm. | Hemenway EA et al. | β | 2025 | β |
| The androgen clock is an epigenetic predictor of long-term male hormone exposure. | Sugrue VJ et al. | β | 2025 | β |
| The application of cell-free DNA methylation patterns in critical illnesses: A protocol paper. | Kao SH et al. | β | 2025 | β |
| The Association Between DNA Methylation and Three-Dimensional Genome During Whole Genome Doubling in <i>Arabidopsis thaliana</i>. | Zhao R et al. | β | 2025 | β |
| The chromatin accessibility landscape of mouse oocytes during configuration transition. | Zhu S et al. | β | 2025 | β |
| The circulating cell-free DNA landscape in sepsis is dominated by impaired liver clearance. | Cano-Gamez K et al. | β | 2025 | β |
| The contribution of small RNAs to the evolution of separate sexes and sex chromosomes in the plant Silene latifolia. | Mendoza-Galindo E et al. | β | 2025 | β |
| The distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana resolve the Central Dogma's information flow. | Zhong Z et al. | β | 2025 | β |
| The DNA demethylase TET1 modifies the impact of maternal folic acid status on embryonic brain development. | Chen L et al. | β | 2025 | β |
| The DNA methylomes of Echinochloa species provide insights into polyploidization-driven adaptation and orphan crop domestication. | Chu Q et al. | β | 2025 | β |
| The Expansion and Diversification of Epigenetic Regulatory Networks Underpins Major Transitions in the Evolution of Land Plants. | Petroll R et al. | β | 2025 | β |
| The genome and GeneBank genomics of allotetraploid Nicotiana tabacum provide insights into genome evolution and complex trait regulation. | Zan Y et al. | β | 2025 | β |
| The genome of the Australian water dragon (Intellagama lesueurii), an agamid model for urban adaptation. | Powell D et al. | β | 2025 | β |
| The genomic and epigenomic landscape of iridocorneal endothelial syndrome. | Liu Y et al. | β | 2025 | β |
| The genomic and epigenomic landscapes of hemizygous genes across crops with contrasting reproductive systems. | Peng Y et al. | β | 2025 | β |
| The grape berry methylome reveals tissue-specific features associated with metabolism in ripening. | Kong J et al. | β | 2025 | β |
| The interplay between epigenomic and transcriptomic variation during ecotype divergence in stickleback. | Luo M et al. | β | 2025 | β |
| The <i>Trypanosoma brucei</i> tRNA methylome. | Militello KT | β | 2025 | β |
| The last imprint: Differential methylation assay for forensic identification of brain tissue and death determination. | Bilinsky G et al. | β | 2025 | β |
| The molecular impact of cigarette smoking resembles aging across tissues. | Ramirez JM et al. | β | 2025 | β |
| The molecular mechanism of Xiaoyaosan in treating major depressive disorder: Integrated analysis of DNA methylation and RNA sequencing of the arcuate nucleus in rats. | Wang R et al. | β | 2025 | β |
| The recurrence or metastasis related gene predicts the prognosis of extremity and trunk soft tissue sarcoma. | Wang D et al. | β | 2025 | β |
| The regulatory interplay between miRNA and DNA methylation orchestrates vital ovarian functions and associated traits in PCOS. | Bhingardeve S et al. | β | 2025 | β |
| The specificity landscape of WRKY transcription factors reveals the bidirectional influence of non-CG methylation. | Ma N et al. | β | 2025 | β |
| The splicing factor U2AF65B regulates cytosine methylation through interacting with DEFECTIVE IN MERISTEM SILENCING 3 in Arabidopsis. | Xiang W et al. | β | 2025 | β |
| Three-dimensional genome architecture connects chromatin structure and function in a major wheat pathogen. | Glavincheska I et al. | β | 2025 | β |
| Transcriptional and epigenomic changes in response to polyethylene glycol-triggered osmotic stress in Brassica napus L. | Prasad M et al. | β | 2025 | β |
| Transcription Dynamics and DNA Methylation Responses to Growth Modification. | Christensen KA et al. | β | 2025 | β |
| Transcriptome and DNA methylation analyses provide insight into the heterosis of growth-related traits in hybrid yellow croaker. | Guo DD et al. | β | 2025 | β |
| Transcriptome and DNA methylation analysis of the goat pineal gland during puberty. | Zhang B et al. | β | 2025 | β |
| Transcriptome and DNA methylation profiling during the NSN to SN transition in mouse oocytes. | Demond H et al. | β | 2025 | β |
| Transcriptomic and epigenomic consequences of heterozygous loss-of-function mutations in AKAP11, a shared risk gene for bipolar disorder and schizophrenia. | Farhangdoost N et al. | β | 2025 | β |
| Transgenerational diabetogenic effects of preconception exposure to inorganic arsenic in C57BL/6 mice are associated with dysregulation of DNA methylation and gene expression in G1 and G2 offspring. | Shang B et al. | β | 2025 | β |
| Transgenerational effects of in ovo stimulation with synbiotic and choline on gonadal tissue across three generations. | Ibrahim M et al. | β | 2025 | β |
| Transgenerational Epigenetic and Phenotypic Inheritance Across Five Generations in Sheep. | Kizilaslan M et al. | β | 2025 | β |
| Transgenerational phenotypic plasticity of the two-spotted spider mite (Tetranychus urticae Koch) in response to abamectin. | Martinelli T et al. | β | 2025 | β |
| Transposable elements are vectors of recurrent transgenerational epigenetic inheritance. | Baduel P et al. | β | 2025 | β |
| Transposable elements drive the subgenomic divergence of homoeologous genes to shape wheat domestication and improvement. | Jia J et al. | β | 2025 | β |
| Transposon proliferation drives genome architecture and regulatory evolution in wild and domesticated peppers. | Zhang K et al. | β | 2025 | β |
| Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response. | Mencia R et al. | β | 2025 | β |
| Tributyltin chloride alters the structural, genomic, and epigenomic integrity of postejaculatory mammalian sperm. | Siddique MS et al. | β | 2025 | β |
| Tumor-agnostic detection of circulating tumor DNA in patients with advanced pancreatic cancer using targeted DNA methylation sequencing and cell-free DNA fragmentomics. | Lapin M et al. | β | 2025 | β |
| Ultra-mild bisulfite outperforms existing methods for 5-methylcytosine detection with low input DNA. | Dai Q et al. | β | 2025 | β |
| Uncovering dormancy stage predictors in sweet cherry through DNA methylation and machine learning integration. | Saavedra GM et al. | β | 2025 | β |
| Uncovering the multi-layer cis-regulatory landscape of rice via integrative nascent RNA analysis. | Goliasse M et al. | β | 2025 | β |
| Validation and Performance of Quantitative BRCA1 and RAD51C Promoter Hypermethylation Testing in Breast and Ovarian Cancers. | Fink JL et al. | β | 2025 | β |
| Variant ribosomal DNA is essential for female differentiation in zebrafish. | Moser TV et al. | β | 2025 | β |
| Variation and Interaction of Distinct Subgenomes Contribute to Growth Diversity in Intergeneric Hybrid Fish. | Ren L et al. | β | 2025 | β |
| Vitamin B12 as an epidrug for regulating peripheral blood biomarkers in long COVID-associated visuoconstructive deficit. | Cassiano LMG et al. | β | 2025 | β |
| Weak evidence for heritable changes in response to selection by aphids in <i>Arabidopsis</i> accessions. | Schmid MW et al. | β | 2025 | β |
| Whole Blood DNA Methylation Analysis Reveals Epigenetic Changes Associated with ARSACS. | De Riso G et al. | β | 2025 | β |
| Whole-genome bisulfite sequencing of cell-free DNA unveils age-dependent and ALS-associated methylation alterations. | Jin Y et al. | β | 2025 | β |
| Whole-genome bisulfite sequencing of X and Y sperm in Holstein bulls reveals differences in autosomal methylation status. | Shangguan A et al. | β | 2025 | β |
| Whole-genome methylation profiling of extracellular vesicle DNA in gastric cancer identifies intercellular communication features. | Lin B et al. | β | 2025 | β |
| Whole-Genome Methylation Sequencing Analysis and Functional Verification of LIM-Homeobox Family Genes in Cervical Cancer. | Yu R et al. | β | 2025 | β |
| Whole Genome Methylation Sequencing via Enzymatic Conversion (EM-seq): Protocol, Data Processing, and Analysis. | Olova NN et al. | β | 2025 | β |
| Whole methylomes reveal high-altitude-associated methylation at hypoxia and pigmentation genes in South American Indigenous populations. | Pryor Y et al. | β | 2025 | β |
| Widespread presence of bone marrow-like hematopoietic stem cell niche in invertebrate skeletons. | Lian S et al. | β | 2025 | β |
| WP-MOD: A multi-omics and taxonomy database for woody plants. | Wang Q et al. | β | 2025 | β |
| Zinc nanoparticles from oral supplements accumulate in renal tumours and stimulate antitumour immune responses. | Zeng X et al. | β | 2025 | β |
| ZmKTF1 promotes salt tolerance by mediating RNA-directed DNA methylation in maize. | Wang J et al. | β | 2025 | β |
| 5-Formylcytosine is an activating epigenetic mark for RNA Pol III during zygotic reprogramming. | Parasyraki E et al. | β | 2024 | β |
| Aberrant DNA methylation distorts developmental trajectories in atypical teratoid/rhabdoid tumors. | Pekkarinen M et al. | β | 2024 | β |
| A blood-based multi-omic landscape for the molecular characterization of kidney stone disease. | Pan W et al. | β | 2024 | β |
| Abscisic Acid Induces DNA Methylation Alteration in Genes Related to Berry Ripening and Stress Response in Grape (<i>Vitis vinifera</i> L). | Li YM et al. | β | 2024 | β |
| A case of T-cell acute lymphoblastic leukemia in retroviral gene therapy for ADA-SCID. | Cesana D et al. | β | 2024 | β |
| A comprehensive analysis of minimally differentially methylated regions common to pediatric and adult solid tumors. | Buckley DN et al. | β | 2024 | β |
| A conserved Pol II elongator SPT6L mediates Pol V transcription to regulate RNA-directed DNA methylation in Arabidopsis. | Liu Y et al. | β | 2024 | β |
| Activation characteristics of Ty3-retrotransposons after spaceflight and genetic stability of insertion sites in rice progeny. | Yang Q et al. | β | 2024 | β |
| Advancing diagnosis and early risk assessment of preeclampsia through noninvasive cell-free DNA methylation profiling. | Baetens M et al. | β | 2024 | β |
| A Fast, Affordable, and Minimally Invasive Diagnostic Test for Cancer of Unknown Primary Using DNA Methylation Profiling. | De Wilde J et al. | β | 2024 | β |
| Age-associated clonal B cells drive B cell lymphoma in mice. | Castro JP et al. | β | 2024 | β |
| Age Prediction Using DNA Methylation Heterogeneity Metrics. | Karetnikov DI et al. | β | 2024 | β |
| Age-related and species-specific methylation changes in the protein-coding marmoset sperm epigenome. | Dittrich M et al. | β | 2024 | β |
| Almond Grafting for Plum Pox Virus Resistance Triggers Significant Transcriptomic and Epigenetic Shifts in Peaches. | Corell-Sierra J et al. | β | 2024 | β |
| Altered genomic methylation promotes Staphylococcus aureus persistence in hospital environment. | Yamazaki Y et al. | β | 2024 | β |
| AMAR-seq: Automated Multimodal Sequencing of DNA Methylation, Chromatin Accessibility, and RNA Expression with Single-Cell Resolution. | Zeng X et al. | β | 2024 | β |
| A maternal-effect <i>Padi6</i> variant causes nuclear and cytoplasmic abnormalities in oocytes, as well as failure of epigenetic reprogramming and zygotic genome activation in embryos. | Giaccari C et al. | β | 2024 | β |
| A multiomic atlas of the aging hippocampus reveals molecular changes in response to environmental enrichment. | PΓ©rez RF et al. | β | 2024 | β |
| A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation. | Ge AY et al. | β | 2024 | β |
| A Multi-Omics Study of Epigenetic Changes in Type II Alveolar Cells of A/J Mice Exposed to Environmental Tobacco Smoke. | Han Q et al. | β | 2024 | β |
| An AI Agent for Fully Automated Multi-Omic Analyses. | Zhou J et al. | β | 2024 | β |
| Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry. | Benjamin KJM et al. | β | 2024 | β |
| Analyzing single-cell bisulfite sequencing data with MethSCAn. | Kremer LPM et al. | β | 2024 | β |
| An atlas of the tomato epigenome reveals that KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac distribution. | An J et al. | β | 2024 | β |
| An epigenome-wide association study of waist circumference in Chinese monozygotic twins. | Xing F et al. | β | 2024 | β |
| Annelid methylomes reveal ancestral developmental and aging-associated epigenetic erosion across Bilateria. | Guynes K et al. | β | 2024 | β |
| A novel technique for estimating age and demography of long-lived seabirds (genus Pterodroma) using an epigenetic clock for Gould's petrel (Pterodroma leucoptera). | Roman L et al. | β | 2024 | β |
| An RdDM-independent function of Pol V transcripts in gene regulation and plant defence. | Yuan Y et al. | β | 2024 | β |
| An RRM domain protein SOE suppresses transgene silencing in rice. | Zhao R et al. | β | 2024 | β |
| A phase I study using bortezomib (Velcade), cladribine, and rituximab in treating patients over 50 years old with mantle cell lymphoma. | Pu JJ et al. | β | 2024 | β |
| A plant virus differentially alters DNA methylation in two cryptic species of a hemipteran vector. | Catto MA et al. | β | 2024 | β |
| A quantitative comparison of urine centrifugation and filtration for the isolation and analysis of urinary nucleic acid biomarkers. | Djomnang LK et al. | β | 2024 | β |
| ARGONAUTE1-binding Tudor domain proteins function in small interfering RNA production for RNA-directed DNA methylation. | Takei T et al. | β | 2024 | β |
| A role for a Trypanosoma brucei cytosine RNA methyltransferase homolog in ribosomal RNA processing. | Militello KT et al. | β | 2024 | β |
| A stage-dependent seed defense response to explain efficient seed transmission of Xanthomonas citri pv. fuscans to common bean. | Darrasse A et al. | β | 2024 | β |
| A strategy for studying epigenetic diversity in natural populations: proof of concept in poplar and oak. | Lesur I et al. | β | 2024 | β |
| Autoantigen-specific CD4<sup>+</sup> TΒ cells acquire an exhausted phenotype and persist in human antigen-specific autoimmune diseases. | Saggau C et al. | β | 2024 | β |
| Autoimmune CD4<sup>+</sup> TΒ cells fine-tune TCF1 expression to maintain function and survive persistent antigen exposure during diabetes. | Aljobaily N et al. | β | 2024 | β |
| Benchmarking sample pooling for epigenomics of natural populations. | Daniels RJ et al. | β | 2024 | β |
| Best practices for germline variant and DNA methylation analysis of second- and third-generation sequencing data. | Bonfiglio F et al. | β | 2024 | β |
| Beyond the base pairs: comparative genome-wide DNA methylation profiling across sequencing technologies. | Liu X et al. | β | 2024 | β |
| BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies. | Zhou W et al. | β | 2024 | β |
| Blood leukocytes as a non-invasive diagnostic tool for thyroid nodules: a prospective cohort study. | Wang F et al. | β | 2024 | β |
| BSXplorer: analytical framework for exploratory analysis of BS-seq data. | Yuditskiy K et al. | β | 2024 | β |
| Cancer-associated DNA hypermethylation of Polycomb targets requires DNMT3A dual recognition of histone H2AK119 ubiquitination and the nucleosome acidic patch. | Gretarsson KH et al. | β | 2024 | β |
| Catalytic-dependent and -independent roles of TET3 in the regulation of specific genetic programs during neuroectoderm specification. | Ketchum HC et al. | β | 2024 | β |
| Cell-type-resolved mosaicism reveals clonal dynamics of the human forebrain. | Chung C et al. | β | 2024 | β |
| Central neurocytoma exhibits radial glial cell signatures with FGFR3 hypomethylation and overexpression. | Lee Y et al. | β | 2024 | β |
| Changes in CpG Methylation of the Vitellogenin 1 Promoter in Adult Male Zebrafish after Exposure to 17Ξ±-Ethynylestradiol. | Kolli RT et al. | β | 2024 | β |
| Chromatin landscape instructs precise transcription factor regulome during embryonic lineage specification. | Wang L et al. | β | 2024 | β |
| Chromosome-scale Elaeis guineensis and E. oleifera assemblies: comparative genomics of oil palm and other Arecaceae. | Low EL et al. | β | 2024 | β |
| Cis-regulatory evolution of the recently expanded Ly49 gene family. | Fan C et al. | β | 2024 | β |
| Clinical significance of peripheral blood DDR1 and CtBP gene methylation detection in patients with acute pancreatitis. | Ma ZH et al. | β | 2024 | β |
| Clinical validation of peripheral blood mononuclear cell DNA methylation markers for accurate early detection of hepatocellular carcinoma in Asian patients. | Cheishvili D et al. | β | 2024 | β |
| Co-analysis of methylation platforms for signatures of biological aging in the domestic dog reveals previously unexplored confounding factors. | Armero AS et al. | β | 2024 | β |
| Colorectal cancer microbiome programs DNA methylation of host cells by affecting methyl donor metabolism. | Liu Z et al. | β | 2024 | β |
| Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity. | Chialastri A et al. | β | 2024 | β |
| Combined and differential roles of ADD domains of DNMT3A and DNMT3L on DNA methylation landscapes in mouse germ cells. | Kubo N et al. | β | 2024 | β |
| Comparative DNA methylation reveals epigenetic adaptation to high altitude in snub-nosed monkeys. | Wang L et al. | β | 2024 | β |
| Comparative Epigenetic Profiling Reveals Distinct Features of Mucosal Melanomas Associated with Immune Cell Infiltration and Their Clinical Implications. | Dai J et al. | β | 2024 | β |
| Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis. | Coelho MA et al. | β | 2024 | β |
| Comparative hepatotoxicity of novel lithium bis(trifluoromethanesulfonyl)imide (LiTFSI, ie. HQ-115) and legacy Perfluorooctanoic acid (PFOA) in male mice: Insights into epigenetic mechanisms and pathway-specific responses. | Sands M et al. | β | 2024 | β |
| Comparative transcriptome and methylome of polar bears, giant and red pandas reveal diet-driven adaptive evolution. | Chen L et al. | β | 2024 | β |
| Comparing methylation levels assayed in GC-rich regions with current and emerging methods. | Guanzon D et al. | β | 2024 | β |
| Complementation testing identifies genes mediating effects at quantitative trait loci underlying fear-related behavior. | Chen PB et al. | β | 2024 | β |
| Comprehensive Analysis of Placental DNA Methylation Changes and Fetal Birth Weight in Pigs. | Tan B et al. | β | 2024 | β |
| Comprehensive multiomics analysis reveals distinct differences between pediatric choroid plexus papilloma and carcinoma. | Choi Y et al. | β | 2024 | β |
| Computational tools for plant genomics and breeding. | Wang H et al. | β | 2024 | β |
| Concomitant loss of TET2 and TET3 results in T cell expansion and genomic instability in mice. | Gioulbasani M et al. | β | 2024 | β |
| Control of epigenomic landscape and development of fetal male germ cells through L-serine metabolism. | Hayashi Y et al. | β | 2024 | β |
| Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data. | Berg K et al. | β | 2024 | β |
| Corticosterone exposure is associated with long-term changes in DNA methylation, physiology and breeding decisions in a wild bird. | Taff CC et al. | β | 2024 | β |
| CXXC5 stabilizes DNA methylation patterns in mouse embryonic stem cells. | Jin SG et al. | β | 2024 | β |
| Dataset of DNA methylation profiles of 189 pediatric central nervous system, soft tissue, and bone tumors. | Jugas R et al. | β | 2024 | β |
| Decoding epigenetic markers: implications of traits and genes through DNA methylation in resilience and susceptibility to mastitis in dairy cows. | Bouzeraa L et al. | β | 2024 | β |
| DeepBAM: a high-accuracy single-molecule CpG methylation detection tool for Oxford nanopore sequencing. | Bai X et al. | β | 2024 | β |
| Deep learning model integrating cfDNA methylation and fragment size profiles for lung cancer diagnosis. | Kim M et al. | β | 2024 | β |
| Deletion in RMST lncRNA impairs hypothalamic neuronal development in a human stem cell-based model of Kallmann Syndrome. | Ali G et al. | β | 2024 | β |
| Developmental DNA demethylation is a determinant of neural stem cell identity and gliogenic competence. | MacArthur IC et al. | β | 2024 | β |
| Developmental origins of Parkinson's disease risk: perinatal exposure to the organochlorine pesticide dieldrin leads to sex-specific DNA modifications in critical neurodevelopmental pathways in the mouse midbrain. | Kochmanski J et al. | β | 2024 | β |
| Development of a genome atlas for discriminating benign, preinvasive, and invasive lung nodules. | Liang P et al. | β | 2024 | β |
| Diagnosis of pediatric central nervous system tumors using methylation profiling of cfDNA from cerebrospinal fluid. | Cornelli L et al. | β | 2024 | β |
| Differential methylation of OPRK1 in borderline personality disorder is associated with childhood trauma. | Gescher DM et al. | β | 2024 | β |
| Differentiation shifts from a reversible to an irreversible heterochromatin state at the DM1 locus. | Handal T et al. | β | 2024 | β |
| Dissecting the Kaiso binding profile in clear renal cancer cells. | Starshin A et al. | β | 2024 | β |
| Distinct genomic contexts predict gene presence-absence variation in different pathotypes of Magnaporthe oryzae. | Joubert PM et al. | β | 2024 | β |
| DMAP2: A Pipeline for Analysis of Whole-Genome-Scale DNA Methylation Sequencing Data. | Stockwell PA et al. | β | 2024 | β |
| DNA cytosine methylation suppresses meiotic recombination at the sex-determining region. | Ge T et al. | β | 2024 | β |
| DNA Hypomethylation Is One of the Epigenetic Mechanisms Involved in Salt-Stress Priming in Soybean Seedlings. | Yung WS et al. | β | 2024 | β |
| DNA Imprinting and Differentially Expressed Genes in <i>Longissimus thoracis</i> Muscle of <i>Bos indicus</i> Submitted to Early Weaning Management. | Tinoco G et al. | β | 2024 | β |
| DNA methylation analysis reveals local changes in resistant and susceptible soybean lines in response to Phytophthora sansomeana. | DiBiase CN et al. | β | 2024 | β |
| DNA Methylation Analysis Reveals Potential Mechanism in Takifugu rubripes Against Cryptocaryon irritans Infection. | Xia YQ et al. | β | 2024 | β |
| DNA methylation and gene expression profiling reveal potential association of retinol metabolism related genes with hepatocellular carcinoma development. | Zhao Y et al. | β | 2024 | β |
| DNA Methylation Carries Signatures of Sublethal Effects Under Thermal Stress in Loggerhead Sea Turtles. | Yen EC et al. | β | 2024 | β |
| DNA methylation controlling abscisic acid catabolism responds to light to mediate strawberry fruit ripening. | Sun Y et al. | β | 2024 | β |
| DNA methylation controls stemness of astrocytes in health and ischaemia. | Kremer LPM et al. | β | 2024 | β |
| DNA methylation correlates with transcriptional noise in response to elevated pCO<sub>2</sub> in the eastern oyster (<i>Crassostrea virginica</i>). | Venkataraman YR et al. | β | 2024 | β |
| DNA methylation fine-tunes pro-and anti-inflammatory signalling pathways in inactive ulcerative colitis tissue biopsies. | Meng W et al. | β | 2024 | β |
| DNA methylation haplotype block signatures responding to Staphylococcus aureus subclinical mastitis and association with production and health traits. | Wang M et al. | β | 2024 | β |
| DNA Methylation of Postnatal Liver Development in Pigs. | Wang Y et al. | β | 2024 | β |
| DNA methylation patterns of transcription factor binding regions characterize their functional and evolutionary contexts. | Rimoldi M et al. | β | 2024 | β |
| DNA methylation plays important roles in lifestyle transition of Arthrobotrys oligospora. | Shi J et al. | β | 2024 | β |
| DNA methylation profiling identifies TBKBP1 as potent amplifier of cytotoxic activity in CMV-specific human CD8+ T cells. | Yu Z et al. | β | 2024 | β |
| DNA methylation regulates biosynthesis of tanshinones and phenolic acids during growth of Salvia miltiorrhiza. | He X et al. | β | 2024 | β |
| DNA methylation remodeling and the functional implication during male gametogenesis in rice. | Li X et al. | β | 2024 | β |
| DNA methylation variations underlie lettuce domestication and divergence. | Cao S et al. | β | 2024 | β |
| Dosage-sensitive maternal siRNAs determine hybridization success in Capsella. | Dziasek K et al. | β | 2024 | β |
| DPPA3 facilitates genome-wide DNA demethylation in mouse primordial germ cells. | Toriyama K et al. | β | 2024 | β |
| Durable and efficient gene silencing in vivo by hit-and-run epigenome editing. | Cappelluti MA et al. | β | 2024 | β |
| Dynamic DNA methylation modifications in the cold stress response of cassava. | Yu G et al. | β | 2024 | β |
| Early developmental carry-over effects on exploratory behaviour and DNA methylation in wild great tits (<i>Parus major</i>). | Sepers B et al. | β | 2024 | β |
| Ectopic enhancer-enhancer interactions as causal forces driving RNA-directed DNA methylation in gene regulatory regions. | Yang Y et al. | β | 2024 | β |
| Effective training of nanopore callers for epigenetic marks with limited labelled data. | Yao B et al. | β | 2024 | β |
| Effector memory-type regulatory T cells display phenotypic and functional instability. | Wendering DJ et al. | β | 2024 | β |
| Effects of Developmental Lead and Phthalate Exposures on DNA Methylation in Adult Mouse Blood, Brain, and Liver: A Focus on Genomic Imprinting by Tissue and Sex. | Morgan RK et al. | β | 2024 | β |
| Employing Multi-Omics Analyses to Understand Changes during Kidney Development in Perinatal Interleukin-6 Animal Model. | Panzade G et al. | β | 2024 | β |
| Epigenetic and transcriptional consequences in the endosperm of chemically induced transposon mobilization in Arabidopsis. | Del Toro-De LeΓ³n G et al. | β | 2024 | β |
| Epigenetic differences between wild and cultivated grapevines highlight the contribution of DNA methylation during crop domestication. | Rodriguez-Izquierdo A et al. | β | 2024 | β |
| Epigenetic disruptions in the offspring hypothalamus in response to maternal infection. | Alsegehy S et al. | β | 2024 | β |
| Epigenetic diversity of genes with copy number variations among natural populations of the three-spined stickleback. | Chain FJJ et al. | β | 2024 | β |
| Epigenetic dynamics of partially methylated domains in human placenta and trophoblast stem cells. | Toh H et al. | β | 2024 | β |
| Epigenetic Modeling of Jumping Translocations of 1q Heterochromatin in Acute Myeloid Leukemia After 5'-Azacytidine Treatment. | Lema Fernandez AG et al. | β | 2024 | β |
| Epigenetic modulators link mitochondrial redox homeostasis to cardiac function in a sex-dependent manner. | ElBeck Z et al. | β | 2024 | β |
| Epigenetic variation impacts individual differences in the transcriptional response to influenza infection. | Aracena KA et al. | β | 2024 | β |
| Epigenome-wide association study identifies DNA methylation loci associated with handgrip strength in Chinese monozygotic twins. | Luo J et al. | β | 2024 | β |
| Exploring changes in social spider DNA methylation profiles in all cytosine contexts following infection. | Fisher DN et al. | β | 2024 | β |
| Exploring the ageing methylome in the model insect, Nasonia vitripennis. | Brink K et al. | β | 2024 | β |
| Expression levels and DNA methylation profiles of the growth gene SHOX in cartilage tissues and chondrocytes. | Hattori A et al. | β | 2024 | β |
| Extensive differential DNA methylation between tuberculosis skin test positive and skin test negative cattle. | Bhat SA et al. | β | 2024 | β |
| Fade into you: genetic control of pigmentation patterns in red-flesh apple (<i>Malus domestica</i>). | Bouillon P et al. | β | 2024 | β |
| FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA. | Liu Y et al. | β | 2024 | β |
| FLI1 is associated with regulation of DNA methylation and megakaryocytic differentiation in FPDMM caused by a RUNX1 transactivation domain mutation. | Tanaka Y et al. | β | 2024 | β |
| Folate-mediated transgenerational inheritance of sperm DNA methylation patterns correlate with spinal axon regeneration. | Madrid A et al. | β | 2024 | β |
| From Omics to Multi-Omics: A Review of Advantages and Tradeoffs. | Hayes CN et al. | β | 2024 | β |
| GametesOmics: A Comprehensive Multi-omics Database for Exploring the Gametogenesis in Humans and Mice. | An J et al. | β | 2024 | β |
| Gene body methylation evolves during the sustained loss of parental care in the burying beetle. | Sarkies P et al. | β | 2024 | β |
| Genetic and epigenetic differentiation in response to genomic selection for avian lay date. | Lindner M et al. | β | 2024 | β |
| Genetic and epigenetic reprogramming in response to internal and external cues by induced transposon mobilization in Moso bamboo. | Zou LH et al. | β | 2024 | β |
| Genetic variation drives cancer cell adaptation to ECM stiffness. | Wang TC et al. | β | 2024 | β |
| Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance. | Ma PF et al. | β | 2024 | β |
| Genome-Scale Multimodal Analysis of Cell-Free DNA Whole-Methylome Sequencing for Noninvasive Esophageal Cancer Detection. | Li Y et al. | β | 2024 | β |
| Genome sequencing of 'Fuji' apple clonal varieties reveals genetic mechanism of the spur-type morphology. | Cai Y et al. | β | 2024 | β |
| Genome-wide analysis of hepatic DNA methylation reveals impact of epigenetic aging on xenobiotic metabolism and transport genes in an aged mouse model. | Abudahab S et al. | β | 2024 | β |
| Genome-Wide DNA Methylation Analysis and Functional Validation of Litter Size Traits in Jining Grey Goats. | Yang C et al. | β | 2024 | β |
| Genome-wide DNA methylation and their transgenerational pattern differ in Arabidopsis thaliana populations originated along the elevation of West Himalaya. | Singh A et al. | β | 2024 | β |
| Genome-wide DNA methylation dynamics following recent polyploidy in the allotetraploid Tragopogon miscellus (Asteraceae). | Shan S et al. | β | 2024 | β |
| Genome-wide epigenetic dynamics of tea leaves under mechanical wounding stress during oolong tea postharvest processing. | Zheng Y et al. | β | 2024 | β |
| Genome wide identification of novel DNA methylation driven prognostic markers in colorectal cancer. | Ma Y et al. | β | 2024 | β |
| Genome-Wide Methylation Analysis Reveals a <i>KCNK3</i>-Prominent Causal Cascade on Hypertension. | Huang D et al. | β | 2024 | β |
| Genome-wide Methylation Dynamics and Context-dependent Gene Expression Variability in Differentiating Preadipocytes. | Yadav B et al. | β | 2024 | β |
| Genome-wide methylation landscape during somatic embryogenesis in Medicago truncatula reveals correlation between Tnt1 retrotransposition and hyperactive methylation regions. | Nandety RS et al. | β | 2024 | β |
| Genome-Wide Methylation Profiling of Peripheral T-Cell Lymphomas Identifies TRIP13 as a Critical Driver of Tumor Proliferation and Survival. | Nowialis P et al. | β | 2024 | β |
| Genome-wide profiles of H3K9me3, H3K27me3 modifications, and DNA methylation during diapause of Asian corn borer (<i>Ostrinia furnacalis</i>). | Lv P et al. | β | 2024 | β |
| Genome-wide single-cell and single-molecule footprinting of transcription factors with deaminase. | He R et al. | β | 2024 | β |
| Genomic and Epigenomic Changes in the Progeny of Cold-Stressed <i>Arabidopsis thaliana</i> Plants. | Rahman A et al. | β | 2024 | β |
| Genomic context determines the effect of DNA methylation on gene expression in the gut epithelium of Atlantic salmon (<i>Salmo salar</i>). | Katirtzoglou A et al. | β | 2024 | β |
| Global characterization of somatic mutations and DNA methylation changes during vegetative propagation in strawberries. | Hu S et al. | β | 2024 | β |
| Global level of methylation in the sea lamprey (jawless vertebrate) genome is intermediate between invertebrate and jawed vertebrate genomes. | Zhang Z et al. | β | 2024 | β |
| Grandmotherhood is associated with reduced OXTR DNA methylation. | Rilling JK et al. | β | 2024 | β |
| H3K36 Methylation - a Guardian of Epigenome Integrity | Padilla R et al. | β | 2024 | β |
| H3K9 methylation regulates heterochromatin silencing through incoherent feedforward loops. | Yabe K et al. | β | 2024 | β |
| Hepatocyte regeneration is driven by embryo-like DNA methylation reprogramming. | Falick Michaeli T et al. | β | 2024 | β |
| Heritable changes of epialleles near genes in maize can be triggered in the absence of CHH methylation. | Liu B et al. | β | 2024 | β |
| High allelic diversity in Arabidopsis NLRs is associated with distinct genomic features. | Sutherland CA et al. | β | 2024 | β |
| Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress. | Taylor BC et al. | β | 2024 | β |
| Human cortical neurogenesis is altered via glucocorticoid-mediated regulation of ZBTB16 expression. | Krontira AC et al. | β | 2024 | β |
| Human post-implantation blastocyst-like characteristics of Muse cells isolated from human umbilical cord. | Kushida Y et al. | β | 2024 | β |
| Hypermethylated genome of a fish vertebrate iridovirus ISKNV plays important roles in viral infection. | Liang M et al. | β | 2024 | β |
| Identification of a DNA methylation signature in whole blood of newborn guinea pigs and human neonates following antenatal betamethasone exposure. | Kim B et al. | β | 2024 | β |
| Identification of cell-specific epigenetic patterns associated with chondroitin sulfate treatment response in an endemic arthritis, Kashin-Beck disease. | Cheng B et al. | β | 2024 | β |
| Identification of epigenetically regulated genes involved in plant-virus interaction and their role in virus-triggered induced resistance. | CorrΓͺa RL et al. | β | 2024 | β |
| ImAge quantitates aging and rejuvenation. | Alvarez-Kuglen M et al. | β | 2024 | β |
| Immune gene regulation is associated with age and environmental adversity in a nonhuman primate. | Watowich MM et al. | β | 2024 | β |
| Impacts of in-vitro zebularine treatment on genome-wide DNA methylation and transcriptomic profiles in Salix purpurea L. | Khodaeiaminjan M et al. | β | 2024 | β |
| Impaired energy expenditure following exposure to either DDT or DDE in mice may be mediated by DNA methylation changes in brown adipose. | Jugan JA et al. | β | 2024 | β |
| Implementation of the Methyl-Seq platform to identify tissue- and sex-specific DNA methylation differences in the rat epigenome. | Cox OH et al. | β | 2024 | β |
| Imprinted X chromosome inactivation at the gamete-to-embryo transition. | Wei C et al. | β | 2024 | β |
| Imprinted X chromosome inactivation in marsupials: The paternal X arrives at the egg with a silent DNA methylation profile. | Milton AM et al. | β | 2024 | β |
| Improved detection of methylation in ancient DNA. | Sawyer S et al. | β | 2024 | β |
| Improve-RRBS: a novel tool to correct the 3' trimming of reduced representation sequencing reads. | FΓ³thi Γ et al. | β | 2024 | β |
| Increased DNA methylation contributes to the early ripening of pear fruits during domestication and improvement. | Song B et al. | β | 2024 | β |
| Increased hippocampal epigenetic age in the Ts65Dn mouse model of Down Syndrome. | Ravaioli F et al. | β | 2024 | β |
| Increased scalability and sequencing quality of an epigenetic age prediction assay. | Mayne B et al. | β | 2024 | β |
| Influence of DNA-methylation at multiple stages of limb chondrogenesis. | PΓ©rez-Maldonado MA et al. | β | 2024 | β |
| Insights into heterosis from histone modifications in the flag leaf of inter-subspecific hybrid rice. | Qi T et al. | β | 2024 | β |
| Insights into the DNA methylation of Portunus trituberculatus in response to Vibrio parahaemolyticus infection. | Zhou X et al. | β | 2024 | β |
| Insights into the molecular characteristics of embryonic cranial neural crest cells and their derived mesenchymal cell pools. | Ba H et al. | β | 2024 | β |
| Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer. | Zhao SG et al. | β | 2024 | β |
| Integrated Genome-Wide Analysis of DNA Methylation and Gene Expression in the Hippocampi of 5xFAD Alzheimer's Disease Mouse Model. | Lee S et al. | β | 2024 | β |
| Integrated Methylome and Transcriptome Analysis between Wizened and Normal Flower Buds in <i>Pyrus pyrifolia</i> Cultivar 'Sucui 1'. | Li H et al. | β | 2024 | β |
| Integrated multi-omic analyses uncover the effects of aging on cell-type regulation in glucose-responsive tissues. | Xu P et al. | β | 2024 | β |
| Integrative analysis of genetics, epigenetics and RNA expression data reveal three susceptibility loci for smoking behavior in Chinese Han population. | Li MD et al. | β | 2024 | β |
| Integrative analysis of the methylome and transcriptome of tomato fruit (<i>Solanum lycopersicum</i> L.) induced by postharvest handling. | Zhou J et al. | β | 2024 | β |
| Integrative analysis of transcriptome, DNA methylome, and chromatin accessibility reveals candidate therapeutic targets in hypertrophic cardiomyopathy. | Gao J et al. | β | 2024 | β |
| Integrative analysis of whole genome bisulfite and transcriptome sequencing reveals the effect of sodium butyrate on DNA methylation in the differentiation of bovine skeletal muscle satellite cells. | Wang X et al. | β | 2024 | β |
| Integrative analysis reveals associations between oral microbiota dysbiosis and host genetic and epigenetic aberrations in oral cavity squamous cell carcinoma. | Cai L et al. | β | 2024 | β |
| Integrative multiomics analysis identifies key genes regulating intramuscular fat deposition during development. | Zhu J et al. | β | 2024 | β |
| Investigating the potential of single-cell DNA methylation data to detect allele-specific methylation and imprinting. | Johnson ND et al. | β | 2024 | β |
| In vitro reconstitution of epigenetic reprogramming in the human germ line. | Murase Y et al. | β | 2024 | β |
| iPSC-based modeling of preeclampsia identifies epigenetic defects in extravillous trophoblast differentiation. | Morey R et al. | β | 2024 | β |
| IRF8 defines the epigenetic landscape in postnatal microglia, thereby directing their transcriptome programs. | Saeki K et al. | β | 2024 | β |
| Is developmental plasticity triggered by DNA methylation changes in the invasive cane toad (<i>Rhinella marina</i>)? | Yagound B et al. | β | 2024 | β |
| Kidney toxicology of a novel compound Lithium Bis(trifluoromethanesulfonyl)imide (LiTFSI, ie. HQ-115) used in energy applications: An epigenetic perspective. | Sands M et al. | β | 2024 | β |
| Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences. | Hauswedell H et al. | β | 2024 | β |
| Liver cancer multiomics reveals diverse protein kinase A disruptions convergently produce fibrolamellar hepatocellular carcinoma. | Requena D et al. | β | 2024 | β |
| Long noncoding RNA MALAT1 mediates fibrous topography-driven pathologic calcification through trans-differentiation of myoblasts. | Kim WJ et al. | β | 2024 | β |
| Long noncoding RNAs underlie multiple domestication traits and leafhopper resistance in soybean. | Wang W et al. | β | 2024 | β |
| Long-term methylome changes after experimental seed demethylation and their interaction with recurrent water stress in Erodium cicutarium (Geraniaceae). | Balao F et al. | β | 2024 | β |
| Loss of Tet hydroxymethylase activity causes mouse embryonic stem cell differentiation bias and developmental defects. | Wang M et al. | β | 2024 | β |
| MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication. | Cahn J et al. | β | 2024 | β |
| Maternal Hypermethylated Genes Contribute to Intrauterine Growth Retardation of Piglets in Rongchang Pigs. | Wu P et al. | β | 2024 | β |
| Maternal malnutrition in mice impairs nephrogenesis by disrupting DNA methylation of regulatory regions. | Makayes Y et al. | β | 2024 | β |
| Maternal Obesity Induces the Meiotic Defects and Epigenetic Alterations During Fetal Oocyte Development. | Tang S et al. | β | 2024 | β |
| MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons. | Liu Y et al. | β | 2024 | β |
| Mediating effects of BMI on the association between DNA methylation regions and 24-h blood pressure in African Americans. | Pan X et al. | β | 2024 | β |
| Mediation role of DNA methylation in association between handgrip strength and cognitive function in monozygotic twins. | Liu J et al. | β | 2024 | β |
| MeIS: DNA Methylation-Based Immune Response Signatures for Thyroid Nodule Diagnostics. | Chen H et al. | β | 2024 | β |
| MEK inhibition prevents CAR-T cell exhaustion and differentiation via downregulation of c-Fos and JunB. | Wang X et al. | β | 2024 | β |
| Metaboepigenetic regulation of gene expression in obesity and insulin resistance. | Das SK et al. | β | 2024 | β |
| Methionine inducing carbohydrate esterase secretion of Trichoderma harzianum enhances the accessibility of substrate glycosidic bonds. | Liu Y et al. | β | 2024 | β |
| MethSCAn: accurate exploratory analysis of single-cell methylomes. | β | β | 2024 | β |
| MethyLasso: a segmentation approach to analyze DNA methylation patterns and identify differentially methylated regions from whole-genome datasets. | Balaramane D et al. | β | 2024 | β |
| Methylation entropy landscape of Chinese long-lived individuals reveals lower epigenetic noise related to human healthy aging. | Wang HT et al. | β | 2024 | β |
| Methylation marks in blood DNA reveal breast cancer risk in patients fulfilling hereditary disease criteria. | Ruiz-De La Cruz M et al. | β | 2024 | β |
| Methylome and transcriptome joint analyses identify differentially expressed genes based on purebred and crossbred Tianjin-monkey Chicken. | Xia S et al. | β | 2024 | β |
| Methylome profile of medaka eggs and sperm. | Wang X et al. | β | 2024 | β |
| Methylomes as key features for predicting recombination in some plant species. | PeΓ±uela M et al. | β | 2024 | β |
| Mission SpaceX CRS-16 RRRM-1 space flight induced skin genomic plasticity via an epigenetic trigger. | Singh K et al. | β | 2024 | β |
| Mitochondrial epigenetics brings new perspectives on doubly uniparental inheritance in bivalves. | Leroux Γ et al. | β | 2024 | β |
| Mitochondrial metabolism and neuroinflammation in the cerebral cortex and cortical synapses of rats: effect of milk intake through DNA methylation. | Trinchese G et al. | β | 2024 | β |
| Mixtures of per- and polyfluoroalkyl substances (PFAS) alter sperm methylation and long-term reprogramming of offspring liver and fat transcriptome. | Maxwell DL et al. | β | 2024 | β |
| Modeling the consequences of age-linked rDNA hypermethylation with dCas9-directed DNA methylation in human cells. | Blokhina Y et al. | β | 2024 | β |
| Modulation of neural gene networks by estradiol in old rhesus macaque females. | Cervera-Juanes R et al. | β | 2024 | β |
| Molecular landscape and multi-omic measurements of heterogeneity in fetal adenocarcinoma of the lung. | Sun L et al. | β | 2024 | β |
| Molecular Mechanisms of Temperature Tolerance Plasticity in an Arthropod. | Aagaard A et al. | β | 2024 | β |
| Molecular Regulation of Fetal Brain Development in Inbred and Congenic Mouse Strains Differing in Longevity. | Islam M et al. | β | 2024 | β |
| Multilayered epigenetic control of persistent and stage-specific imprinted genes in rice endosperm. | Tonosaki K et al. | β | 2024 | β |
| Multimodal analysis of cfDNA methylomes for early detecting esophageal squamous cell carcinoma and precancerous lesions. | Liu J et al. | β | 2024 | β |
| Multi-omic characterization of allele-specific regulatory variation in hybrid pigs. | Quan J et al. | β | 2024 | β |
| Multiomic profiling of transcription factor binding and function in human brain. | Loupe JM et al. | β | 2024 | β |
| Multi-omics panoramic analysis ofΒ HBV integration, transcriptional regulation, and epigenetic modifications in PLC/PRF/5 cell line. | Guan G et al. | β | 2024 | β |
| Multi-omics provide insights into the regulation of DNA methylation in pear fruit metabolism. | Gu C et al. | β | 2024 | β |
| Multiomics Research: Principles and Challenges in Integrated Analysis. | Luo Y et al. | β | 2024 | β |
| Natural polymorphisms in ZMET2 encoding a DNA methyltransferase modulate the number of husk layers in maize. | Wang Z et al. | β | 2024 | β |
| Neural-net-based cell deconvolution from DNA methylation reveals tumor microenvironment associated with cancer prognosis. | Yasumizu Y et al. | β | 2024 | β |
| Non-CG DNA hypomethylation promotes photosynthesis and nitrogen fixation in soybean. | Xun H et al. | β | 2024 | β |
| Non-CG DNA methylation marks the transition from pupa to adult in Helicoverpa armigera. | Royle JW et al. | β | 2024 | β |
| Noninvasive Detection of Neuroendocrine Prostate Cancer through Targeted Cell-free DNA Methylation. | Franceschini GM et al. | β | 2024 | β |
| Noninvasive Lung Cancer Subtype Classification Using Tumor-Derived Signatures and cfDNA Methylome. | Li S et al. | β | 2024 | β |
| Novel insights into drought-induced regulation of ribosomal genes through DNA methylation in chickpea. | Yadav S et al. | β | 2024 | β |
| Nuclear receptor-SINE B1 network modulates expanded pluripotency in blastoids and blastocysts. | Wong KW et al. | β | 2024 | β |
| Oral pimonidazole unveils clinicopathologic and epigenetic features of hypoxic tumour aggressiveness in localized prostate cancer. | Ci X et al. | β | 2024 | β |
| Pathological R-loops in bacteria from engineered expression of endogenous antisense RNAs whose synthesis is ordinarily terminated by Rho. | Pandiyan A et al. | β | 2024 | β |
| PCBS: an R package for fast and accurate analysis of bisulfite sequencing data. | Lande K et al. | β | 2024 | β |
| Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid. | Carswell G et al. | β | 2024 | β |
| Platinum-based chemotherapy promotes antigen presenting potential in monocytes of patients with high-grade serous ovarian carcinoma. | Larionova I et al. | β | 2024 | β |
| Population genomics and epigenomics of Spirodela polyrhiza provide insights into the evolution of facultative asexuality. | Wang Y et al. | β | 2024 | β |
| Population-wide DNA methylation polymorphisms at single-nucleotide resolution in 207 cotton accessions reveal epigenomic contributions to complex traits. | Zhao T et al. | β | 2024 | β |
| Prenatal exposures and cell type proportions are main drivers of <i>FKBP5</i> DNA methylation in maltreated and non-maltreated children. | Karlbauer VN et al. | β | 2024 | β |
| Primordial germ cell DNA demethylation and development require DNA translesion synthesis. | Shah P et al. | β | 2024 | β |
| PRKACB is a novel imprinted gene in marsupials. | Newman T et al. | β | 2024 | β |
| Prostate cancer detection through unbiased capture of methylated cell-free DNA. | Lleshi E et al. | β | 2024 | β |
| Provision of choline chloride to the bovine preimplantation embryo alters postnatal body size and DNA methylationβ . | Haimon MLJ et al. | β | 2024 | β |
| PTGS is dispensable for the initiation of epigenetic silencing of an active transposon in Arabidopsis. | Trasser M et al. | β | 2024 | β |
| Quantification method of ctDNA using cell-free DNA methylation profile for noninvasive screening and monitoring of colon cancer. | Ryu H et al. | β | 2024 | β |
| Reactivation of senescence-associated endogenous retroviruses by ATF3 drives interferon signaling in aging. | Mao J et al. | β | 2024 | β |
| Reduced representation bisulfite sequencing (RRBS) analysis reveals variation in distribution and levels of DNA methylation in white birch (<i>Betula papyrifera</i>) exposed to nickel. | Nkongolo K et al. | β | 2024 | β |
| Regional active transcription associates with homoeologous exchange breakpoints in synthetic Brassica tetraploids. | Cai C et al. | β | 2024 | β |
| Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F<sub>1</sub> hybrids. | Boman J et al. | β | 2024 | β |
| Remodeling of the epigenetic landscape in rainbow trout, Oncorhynchus mykiss, offspring in response to maternal choline intake. | Freij K et al. | β | 2024 | β |
| Repeat-based holocentromeres of the woodrush Luzula sylvatica reveal insights into the evolutionary transition to holocentricity. | Mata-Sucre Y et al. | β | 2024 | β |
| Reprogramming of DNA methylation and changes of gene expression in grafted <i>Hevea brasiliensis</i>. | Li HL et al. | β | 2024 | β |
| Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs. | Shimada A et al. | β | 2024 | β |
| Retrotransposon-driven environmental regulation of FLC leads to adaptive response to herbicide. | Raingeval M et al. | β | 2024 | β |
| RNA 5-methylcytosine marks mitochondrial double-stranded RNAs for degradation and cytosolic release. | Kim S et al. | β | 2024 | β |
| Rockfish: A transformer-based model for accurate 5-methylcytosine prediction from nanopore sequencing. | StanojeviΔ D et al. | β | 2024 | β |
| Role of Epigenetic Factors in Determining the Biological Behavior and Prognosis of Hepatocellular Carcinoma. | Akbulut S et al. | β | 2024 | β |
| scEpiAge: an age predictor highlighting single-cell ageing heterogeneity in mouse blood. | Bonder MJ et al. | β | 2024 | β |
| SETDB1 regulates short interspersed nuclear elements and chromatin loop organization in mouse neural precursor cells. | Sun D et al. | β | 2024 | β |
| Sex-specific DNA methylation and gene expression changes in mouse placentas after early preimplantation alcohol exposure. | Legault LM et al. | β | 2024 | β |
| Single-base resolution quantitative genome methylation analysis in the model bacterium Helicobacter pylori by enzymatic methyl sequencing (EM-Seq) reveals influence of strain, growth phase, and methyl homeostasis. | Patel L et al. | β | 2024 | β |
| Skeletal muscle feature of different populations in large yellow croaker (<i>Larimichthys crocea</i>): from an epigenetic point of view. | Xie S et al. | β | 2024 | β |
| Smad4 restricts injury-provoked biliary proliferation and carcinogenesis. | Alexander WB et al. | β | 2024 | β |
| Splice_sim: a nucleotide conversion-enabled RNA-seq simulation and evaluation framework. | Popitsch N et al. | β | 2024 | β |
| Strengths and limitations of reduced representation bisulfite sequencing (RRBS) in the perspective of DNA methylation analysis in fish: a case-study on rainbow trout spermatozoa. | El Kamouh M et al. | β | 2024 | β |
| Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales. | Lax C et al. | β | 2024 | β |
| Targeted bisulfite sequencing of Scots pine adaptation-related genes. | AlakΓ€rppΓ€ E et al. | β | 2024 | β |
| Targeted suppression of siRNA biogenesis in Arabidopsis pollen promotes triploid seed viability. | Pachamuthu K et al. | β | 2024 | β |
| Targeting the hypothalamus for modeling age-related DNA methylation and developing OXT-GnRH combinational therapy against Alzheimer's disease-like pathologies in male mouse model. | Usmani SS et al. | β | 2024 | β |
| TET3 regulates terminal cell differentiation at the metabolic level. | Mulet I et al. | β | 2024 | β |
| TET proteins regulate <i>Drosha</i> expression and impact microRNAs in iNKT cells. | Gioulbasani M et al. | β | 2024 | β |
| The chromatin remodeling factor OsINO80 promotes H3K27me3 and H3K9me2 deposition and maintains TE silencing in rice. | Du K et al. | β | 2024 | β |
| The C-terminal 4CXXC-type zinc finger domain of CDCA7 recognizes hemimethylated DNA and modulates activities of chromatin remodeling enzyme HELLS. | Shinkai A et al. | β | 2024 | β |
| The dynamic landscape of enhancer-derived RNA during mouse early embryo development. | Yu H et al. | β | 2024 | β |
| The genome regulatory landscape of Atlantic salmon liver through smoltification. | Harvey TN et al. | β | 2024 | β |
| The gonadal niche safeguards human fetal germline cell development following maternal SARS-CoV-2 infection. | Shen S et al. | β | 2024 | β |
| The impact of the embryonic DNA methylation program on CTCF-mediated genome regulation. | Monteagudo-SΓ‘nchez A et al. | β | 2024 | β |
| The long non-coding RNA Meg3 mediates imprinted gene expression during stem cell differentiation. | Farhadova S et al. | β | 2024 | β |
| The near-complete genome assembly of hexaploid wild oat reveals its genome evolution and divergence with cultivated oats. | He Q et al. | β | 2024 | β |
| The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees. | Shi T et al. | β | 2024 | β |
| The tea cultivar 'Chungui' with jasmine-like aroma: From genome and epigenome to quality. | Li X et al. | β | 2024 | β |
| The tetraploid Camellia oleifera genome provides insights into evolution, agronomic traits, and genetic architecture of oil Camellia plants. | Zhang L et al. | β | 2024 | β |
| The Ty1 retrotransposon harbors a DNA region that performs dual functions as both a gene silencing and chromatin insulator. | Masumoto H et al. | β | 2024 | β |
| Tissue of origin detection for cancer tumor using low-depth cfDNA samples through combination of tumor-specific methylation atlas and genome-wide methylation density in graph convolutional neural networks. | Nguyen TH et al. | β | 2024 | β |
| Transcorneal electrical stimulation restores DNA methylation changes in retinal degeneration. | Tew BY et al. | β | 2024 | β |
| Transcriptional regulatory network reveals key transcription factors for regulating agronomic traits in soybean. | Jiao W et al. | β | 2024 | β |
| Transcription Factors Are Involved in Wizened Bud Occurrence During the Growing Season in the <i>Pyrus pyrifolia</i> Cultivar 'Sucui 1'. | Li H et al. | β | 2024 | β |
| Transcriptome analysis identifies an ASD-Like phenotype in oligodendrocytes and microglia from C58/J amygdala that is dependent on sex and sociability. | Dalton GD et al. | β | 2024 | β |
| Transcriptomic and epigenetic responses shed light on soybean resistance to Phytophthora sansomeana. | Lee G et al. | β | 2024 | β |
| Transcriptomic and Methylomic Analyses Show Significant Shifts in Biosynthetic Processes and Reduced Intrapopulation Gene Expression Variance in PAH-Adapted Atlantic Killifish. | Harishchandra A et al. | β | 2024 | β |
| Transformer-based representation learning and multiple-instance learning for cancer diagnosis exclusively from raw sequencing fragments of bisulfite-treated plasmaΒ cell-free DNA. | Liu J et al. | β | 2024 | β |
| Triterpenoid ursolic acid regulates the environmental carcinogen benzo[a]pyrene-driven epigenetic and metabolic alterations in SKH-1 hairless mice for skin cancer interception. | Sarwar MS et al. | β | 2024 | β |
| TTF1 control of LncRNA synthesis delineates a tumor suppressor pathway directly regulating the ribosomal RNA genes. | Sibai DS et al. | β | 2024 | β |
| TULIPs decorate the three-dimensional genome of PFA ependymoma. | Johnston MJ et al. | β | 2024 | β |
| Two telomere-to-telomere gapless genomes reveal insights into Capsicum evolution and capsaicinoid biosynthesis. | Chen W et al. | β | 2024 | β |
| Uncovering DNA methylation landscapes to decipher evolutionary footprints of phenotypic diversity in chickpea. | Daware A et al. | β | 2024 | β |
| Uncovering the roles of DNA hemi-methylation in transcriptional regulation using MspJI-assisted hemi-methylation sequencing. | Xiong X et al. | β | 2024 | β |
| Unraveling the key role of chromatin structure in cancer development through epigenetic landscape characterization of oral cancer. | Xue Y et al. | β | 2024 | β |
| Upstream regulator of genomic imprinting in rice endosperm is a small RNA-associated chromatin remodeler. | Pal AK et al. | β | 2024 | β |
| Use of Enzymatically Converted Cell-Free DNA (cfDNA) Data for Copy Number Variation-Linked Fragmentation Analysis Allows for Early Colorectal Cancer Detection. | ΔernoΕ‘a I et al. | β | 2024 | β |
| Using single-sample networks and genetic algorithms to identify radiation-responsive genes in rice affected by heavy ions of the galactic cosmic radiation with different LET values. | Zhang Y et al. | β | 2024 | β |
| Viral genomic methylation and the interspecies evolutionary relationships of ranavirus. | Pan W et al. | β | 2024 | β |
| Viral reprogramming of host transcription initiation. | Ungerleider NA et al. | β | 2024 | β |
| Whole-genome bisulfite sequencing data analysis learning module on Google Cloud Platform. | Qin Y et al. | β | 2024 | β |
| Whole-genome bisulfite sequencing identifies stage- and subtype-specific DNA methylation signatures in pancreatic cancer. | Wang SS et al. | β | 2024 | β |
| Whole-Genome Bisulfite Sequencing (WGBS) Analysis of <i>Gossypium hirsutum</i> under High-Temperature Stress Conditions. | Gong Z et al. | β | 2024 | β |
| Whole-genome DNA methylation profiling revealed epigenetic regulation of NF-ΞΊB signaling pathway involved in response to Vibrio alginolyticus infection in the Pacific oyster, Crassostrea gigas. | Li JA et al. | β | 2024 | β |
| Whole-genome DNA methylomes of tree shrew brains reveal conserved and divergent roles of DNA methylation on sex chromosome regulation. | Son DR et al. | β | 2024 | β |
| Ξ±-Hemolysin from Staphylococcus aureus Changes the Epigenetic Landscape of Th17 Cells. | PastwiΕska J et al. | β | 2024 | β |