Genotype Imputation with Millions of Reference Samples.
paper
Cited
Public
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- Authors
- Browning, Brian L; Browning, Sharon R
- Year
- 2016
- Journal
- American journal of human genetics
- PMID
- 26748515
- DOI
- 10.1016/j.ajhg.2015.11.020
- PMCID
- PMC4716681
We present a genotype imputation method that scales to millions of reference samples. The imputation method, based on the Li and Stephens model and implemented in Beagle v.4.1, is parallelized and memory efficient, making it well suited to multi-core computer processors. It achieves fast, accurate, and memory-efficient genotype imputation by restricting the probability model to markers that are genotyped in the target samples and by performing linear interpolation to impute ungenotyped variants. We compare Beagle v.4.1 with Impute2 and Minimac3 by using 1000 Genomes Project data, UK10K Project data, and simulated data. All three methods have similar accuracy but different memory requirements and different computation times. When imputing 10 Mb of sequence data from 50,000 reference samples, Beagle's throughput was more than 100Γ greater than Impute2's throughput on our computer servers. When imputing 10 Mb of sequence data from 200,000 reference samples in VCF format, Minimac3 consumed 26Γ more memory per computational thread and 15Γ more CPU time than Beagle. We demonstrate that Beagle v.4.1 scales to much larger reference panels by performing imputation from a simulated reference panel having 5 million samples and a mean marker density of one marker per four base pairs.
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| Mid-Pleistocene Transitions Forced Himalayan ibex to Evolve Independently after Split into an Allopatric Refugium. | Jabin G et al. | β | 2023 | β |
| Multi-ancestry phenome-wide association of complement component 4 variation with psychiatric and brain phenotypes in youth. | Hernandez LM et al. | β | 2023 | β |
| Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional data. | Chattopadhyay A et al. | β | 2023 | β |
| No evidence for sex chromosomes in natural populations of the cichlid fish Astatotilapia burtoni. | LichilΓn N et al. | β | 2023 | β |
| Performance and accuracy evaluation of reference panels for genotype imputation in sub-Saharan African populations. | Sengupta D et al. | β | 2023 | β |
| Polygenic risk for neuroticism is associated with externalizing symptoms in 2-year-old boys. | Liuhanen J et al. | β | 2023 | β |
| Preselecting Variants from Large-Scale Genome-Wide Association Study Meta-Analyses Increases the Genomic Prediction Accuracy of Growth and Carcass Traits in Large White Pigs. | Wei C et al. | β | 2023 | β |
| Reconstruction of the personal information from human genome reads in gut metagenome sequencing data. | Tomofuji Y et al. | β | 2023 | β |
| Review: Computational analysis of human skeletal remains in ancient DNA and forensic genetics. | Childebayeva A et al. | β | 2023 | β |
| Sequence-based GWAS meta-analyses for beef production traits. | Sanchez MP et al. | β | 2023 | β |
| Skim resequencing finely maps the downy mildew resistance loci <i>RPF2</i> and <i>RPF3</i> in spinach cultivars whale and Lazio. | Bhattarai G et al. | β | 2023 | β |
| Social antagonism facilitates supergene expansion in ants. | Scarparo G et al. | β | 2023 | β |
| Structural variants and short tandem repeats impact gene expression and splicing in bovine testis tissue. | Bhati M et al. | β | 2023 | β |
| Symbiotic Variations among Wheat Genotypes and Detection of Quantitative Trait Loci for Molecular Interaction with Auxin-Producing <i>Azospirillum</i> PGPR. | Valente J et al. | β | 2023 | β |
| The Development of Thematic Core Collections in Cassava Based on Yield, Disease Resistance, and Root Quality Traits. | Dos Santos CC et al. | β | 2023 | β |
| The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs. | Ciucani MM et al. | β | 2023 | β |
| The Genotypic Variability among Short-Season Soybean Cultivars for Nitrogen Fixation under Drought Stress. | Liyanage DK et al. | β | 2023 | β |
| The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation. | Li Z et al. | β | 2023 | β |
| The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle. | Lloret-Villas A et al. | β | 2023 | β |
| The solution surface of the Li-Stephens haplotype copying model. | Jin Y et al. | β | 2023 | β |
| Unequal Reproduction Early in a Social Transition: Insights from Invasive Wasps. | Sankovitz M et al. | β | 2023 | β |
| Urban population structure and dispersal of an Australian mosquito (Aedes notoscriptus) involved in disease transmission. | Paris V et al. | β | 2023 | β |
| Whole-genome sequencing reveals fine-scale environment-associated divergence near the range limits of a temperate reef fish. | Nugent CM et al. | β | 2023 | β |
| A 1-bp deletion in bovine QRICH2 causes low sperm count and immotile sperm with multiple morphological abnormalities. | Hiltpold M et al. | β | 2022 | β |
| Adaptive divergence in bill morphology and other thermoregulatory traits is facilitated by restricted gene flow in song sparrows on the California Channel Islands. | Gamboa MP et al. | β | 2022 | β |
| A further look at quantitative trait loci for growth and fatness traits in a White DurocβΓβErhualian F<sub>3</sub> intercross population. | Deng Z et al. | β | 2022 | β |
| A Genome-Wide Association Study of Senegalese Sorghum Seedlings Responding to Pathotype 5 of <i>Sporisorium reilianum</i>. | Ahn E et al. | β | 2022 | β |
| A joint use of pooling and imputation for genotyping SNPs. | Clouard C et al. | β | 2022 | β |
| A machine learning model using SNPs obtained from a genome-wide association study predicts the onset of vincristine-induced peripheral neuropathy. | Yamada H et al. | β | 2022 | β |
| A natural uORF variant confers phosphorus acquisition diversity in soybean. | Guo Z et al. | β | 2022 | β |
| Ancient Maltese genomes and the genetic geography of Neolithic Europe. | Ariano B et al. | β | 2022 | β |
| A polar bear paleogenome reveals extensive ancient gene flow from polar bears into brown bears. | Wang MS et al. | β | 2022 | β |
| A socially polymorphic Formica ant species exhibits a novel distribution of social supergene genotypes. | Pierce D et al. | β | 2022 | β |
| Assessing accuracy of genotype imputation in the Afrikaner and Brahman cattle breeds of South Africa. | Mdyogolo S et al. | β | 2022 | β |
| Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle. | Teng J et al. | β | 2022 | β |
| Association between arterial hypertension and liver outcomes using polygenic risk scores: a population-based study. | Γ berg F et al. | β | 2022 | β |
| Associations between forensic loci and expression levels of neighboring genes may compromise medical privacy. | BaΓ±uelos MM et al. | β | 2022 | β |
| Bayesian optimization of multivariate genomic prediction models based on secondary traits for improved accuracy gains and phenotyping costs. | Hamazaki K et al. | β | 2022 | β |
| Best practices for analyzing imputed genotypes from low-pass sequencing in dogs. | Buckley RM et al. | β | 2022 | β |
| Chromosome-scale genome assembly of the brown anole (Anolis sagrei), an emerging model species. | Geneva AJ et al. | β | 2022 | β |
| cis-Regulatory variation affecting gene expression contributes to the improvement of maize kernel size. | Li YX et al. | β | 2022 | β |
| Cost-effectively dissecting the genetic architecture of complex wool traits in rabbits by low-coverage sequencing. | Wang D et al. | β | 2022 | β |
| Decoding the diversity of killer immunoglobulin-like receptors by deep sequencing and a high-resolution imputation method. | Sakaue S et al. | β | 2022 | β |
| Dissecting the Genetic Architecture of Phenology Affecting Adaptation of Spring Bread Wheat Genotypes to the Major Wheat-Producing Zones in India. | Bhati PK et al. | β | 2022 | β |
| Dissection of a grain yield QTL from wild emmer wheat reveals sub-intervals associated with culm length and kernel number. | Deblieck M et al. | β | 2022 | β |
| Exploring the optimal strategy of imputation from SNP array to whole-genome sequencing data in farm animals. | Jiang Y et al. | β | 2022 | β |
| Genetic architecture and QTL selection response for Kernza perennial grain domestication traits. | Crain J et al. | β | 2022 | β |
| Genetic Architecture of Powdery Mildew Resistance Revealed by a Genome-Wide Association Study of a Worldwide Collection of Flax (<i>Linum usitatissimum L</i>.). | Speck A et al. | β | 2022 | β |
| Genetic associations at regulatory phenotypes improve fine-mapping of causal variants for 12 immune-mediated diseases. | Kundu K et al. | β | 2022 | β |
| Genetic characterization of outbred Sprague Dawley rats and utility for genome-wide association studies. | Gileta AF et al. | β | 2022 | β |
| Genetic control of leaf angle in sorghum and its effect on light interception. | Zhi X et al. | β | 2022 | β |
| Genetic regulation of newborn telomere length is mediated and modified by DNA methylation. | Wang C et al. | β | 2022 | β |
| Genetic susceptibility loci for <i>Chlamydia trachomatis</i> endometrial infection influence expression of genes involved in T cell function, tryptophan metabolism and epithelial integrity. | Zhong W et al. | β | 2022 | β |
| Genetic variants associated with two major bovine milk fatty acids offer opportunities to breed for altered milk fat composition. | Knutsen TM et al. | β | 2022 | β |
| Genome resequencing reveals independent domestication and breeding improvement of naked oat. | Nan J et al. | β | 2022 | β |
| Genome Sequencing of a Gray Wolf from Peninsular India Provides New Insights into the Evolution and Hybridization of Gray Wolves. | Wang MS et al. | β | 2022 | β |
| Genome-wide association analysis reveals new insights into the genetic architecture of defensive, agro-morphological and quality-related traits in cassava. | Rabbi IY et al. | β | 2022 | β |
| Genome-wide association mapping of resistance to the sorghum aphid in Sorghum bicolor. | Punnuri SM et al. | β | 2022 | β |
| Genome-Wide Association Study Identified a Quantitative Trait Locus and Two Candidate Genes on <i>Sus scrofa</i> Chromosome 2 Affecting Vulvar Traits of Suhuai Pigs. | Yin Y et al. | β | 2022 | β |
| Genome-wide association study of Senegalese sorghum seedlings responding to a Texas isolate of Colletotrichum sublineola. | Ahn E et al. | β | 2022 | β |
| Genome-wide association study reveals white lupin candidate gene involved in anthracnose resistance. | Alkemade JA et al. | β | 2022 | β |
| Genome-wide association study with imputed whole-genome sequence variants including large deletions for female fertility in 3 Nordic dairy cattle breeds. | Mesbah-Uddin M et al. | β | 2022 | β |
| Genome-Wide Genomic and Functional Association Study for Workability and Calving Traits in Holstein Cattle. | Jakimowicz M et al. | β | 2022 | β |
| Genomic analyses of rice bean landraces reveal adaptation and yield related loci to accelerate breeding. | Guan J et al. | β | 2022 | β |
| Genomic insight into genetic changes and shaping of major inbred rice cultivars in China. | Ye J et al. | β | 2022 | β |
| Genomic integration to identify molecular biomarkers associated with indicator traits of gastrointestinal nematode resistance in sheep. | Berton MP et al. | β | 2022 | β |
| Genomic prediction of carcass traits using different haplotype block partitioning methods in beef cattle. | Li H et al. | β | 2022 | β |
| Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits. | Tong H et al. | β | 2022 | β |
| Genomic prediction of zinc-biofortification potential in rice gene bank accessions. | Rakotondramanana M et al. | β | 2022 | β |
| Genomic regions and candidate genes selected during the breeding of rice in Vietnam. | Higgins J et al. | β | 2022 | β |
| Genomic selection applications can improve the environmental performance of aquatics: A case study on the heat tolerance of abalone. | Liu J et al. | β | 2022 | β |
| Genomic Selection in Chinese Holsteins Using Regularized Regression Models for Feature Selection of Whole Genome Sequencing Data. | Li S et al. | β | 2022 | β |
| Genotype imputation for soybean nested association mapping population to improve precision of QTL detection. | Chen L et al. | β | 2022 | β |
| Genotyping, the Usefulness of Imputation to Increase SNP Density, and Imputation Methods and Tools. | Phocas F | β | 2022 | β |
| Habitat-linked genetic variation supports microgeographic adaptive divergence in an island-endemic bird species. | Cheek RG et al. | β | 2022 | β |
| High Levels of Complement Activating Enzyme MASP-2 Are Associated With the Risk of Future Incident Venous Thromboembolism. | Damoah CE et al. | β | 2022 | β |
| HKG: an open genetic variant database of 205 Hong Kong cantonese exomes. | Ou M et al. | β | 2022 | β |
| HLA-disease association and pleiotropy landscape in over 235,000 Finns. | Ritari J et al. | β | 2022 | β |
| Identification of Candidate Genes Regulating Carcass Depth and Hind Leg Circumference in Simmental Beef Cattle Using Illumina Bovine Beadchip and Next-Generation Sequencing Analyses. | Bordbar F et al. | β | 2022 | β |
| Identification of QTLs affecting post-anthesis heat stress responses in European bread wheat. | Touzy G et al. | β | 2022 | β |
| Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study. | Wang Y et al. | β | 2022 | β |
| Implementation of CYP2D6 copy-number imputation panel and frequency of key pharmacogenetic variants in Finnish individuals with a psychotic disorder. | HΓ€kkinen K et al. | β | 2022 | β |
| Increased Risk of Preeclampsia in Women With a Genetic Predisposition to Elevated Blood Pressure. | Kivioja A et al. | β | 2022 | β |
| Increasing cassava root yield: Additive-dominant genetic models for selection of parents and clones. | de Andrade LRB et al. | β | 2022 | β |
| Lipidome- and Genome-Wide Study to Understand Sex Differences in Circulatory Lipids. | Tabassum R et al. | β | 2022 | β |
| Mapping and selection of downy mildew resistance in spinach cv. whale by low coverage whole genome sequencing. | Bhattarai G et al. | β | 2022 | β |
| Missing data in bioarchaeology II: A test of ordinal and continuous data imputation. | Wissler A et al. | β | 2022 | β |
| Moment estimators of relatedness from low-depth whole-genome sequencing data. | Herzig AF et al. | β | 2022 | β |
| Multi-omics approaches for comprehensive analysis and understanding of the immune response in the miniature pig breed. | Arora D et al. | β | 2022 | β |
| Nyssorhynchus darlingi genome-wide studies related to microgeographic dispersion and blood-seeking behavior. | Alvarez MVN et al. | β | 2022 | β |
| Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes. | Ebler J et al. | β | 2022 | β |
| Parsimonious genotype by environment interaction covariance models for cassava (<i>Manihot esculenta</i>). | Bakare MA et al. | β | 2022 | β |
| Patterns of Volatile Diversity Yield Insights Into the Genetics and Biochemistry of the Date Palm Fruit Volatilome. | Flowers JM et al. | β | 2022 | β |
| Phenotype-Genotype analysis of caucasian patients with high risk of osteoarthritis. | Wang Y et al. | β | 2022 | β |
| Rapid, Reference-Free human genotype imputation with denoising autoencoders. | Dias R et al. | β | 2022 | β |
| Rare Variants in Inborn Errors of Immunity Genes Associated With Covid-19 Severity. | Liu P et al. | β | 2022 | β |
| Recovering High-Quality Host Genomes from Gut Metagenomic Data through Genotype Imputation. | Marcos S et al. | β | 2022 | β |
| Recovery of mitogenomes from whole genome sequences to infer maternal diversity in 1883 modern taurine and indicine cattle. | Dorji J et al. | β | 2022 | β |
| Riboflavin intake, <i>MTRR</i> genetic polymorphism (rs1532268) and gastric cancer risk in a Korean population: a case-control study. | Lu YT et al. | β | 2022 | β |
| RXLR effector gene Avr3a from Phytophthora sojae is recognized by Rps8 in soybean. | Arsenault-Labrecque G et al. | β | 2022 | β |
| Selection signatures in the CIMMYT International Elite Spring and Semi-arid Wheat Yield Trials. | Mondaini A et al. | β | 2022 | β |
| Smoking behavior might affect allergic rhinitis and vasomotor rhinitis differently: A mendelian randomization appraisal. | Wang S et al. | β | 2022 | β |
| SNP-Based Genome-Wide Association Mapping of Pollen Viability Under Heat Stress in Tropical <i>Zea mays</i> L. Inbred Lines. | Ahmed Z et al. | β | 2022 | β |
| The BS variant of C4 protects against age-related loss of white matter microstructural integrity. | Traylor M et al. | β | 2022 | β |
| The genetic architecture of phenotypic diversity in the Betta fish (<i>Betta splendens</i>). | Zhang W et al. | β | 2022 | β |
| The genomic history and global expansion of domestic donkeys. | Todd ET et al. | β | 2022 | β |
| The genomic structure of isolation across breed, country and strain for important South African and Australian sheep populations. | Nel C et al. | β | 2022 | β |
| The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange. | Muleta KT et al. | β | 2022 | β |
| Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide. | Stuart PE et al. | β | 2022 | β |
| Whole-exome sequencing identifies novel protein-altering variants associated with serum apolipoprotein and lipid concentrations. | Sandholm N et al. | β | 2022 | β |
| Accurate imputation of human leukocyte antigens with CookHLA. | Cook S et al. | β | 2021 | β |
| A genomics resource for genetics, physiology, and breeding of West African sorghum. | Faye JM et al. | β | 2021 | β |
| A Hu sheep genome with the first ovine Y chromosome reveal introgression history after sheep domestication. | Li R et al. | β | 2021 | β |
| A Method for Identifying Environmental Stimuli and Genes Responsible for Genotype-by-Environment Interactions From a Large-Scale Multi-Environment Data Set. | Onogi A et al. | β | 2021 | β |
| An Ensemble Method for Missing Data of Environmental Sensor Considering Univariate and Multivariate Characteristics. | Choi C et al. | β | 2021 | β |
| A pipeline for RNA-seq based eQTL analysis with automated quality control procedures. | Wang T et al. | β | 2021 | β |
| Assessment of Imputation Quality: Comparison of Phasing and Imputation Algorithms in Real Data. | Stahl K et al. | β | 2021 | β |
| Associations between human leukocyte antigens and renal function. | Lowe M et al. | β | 2021 | β |
| Attack of the dark clones the genetics of reproductive and color traits of South African honey bees (Apis mellifera spp.). | Patterson Rosa L et al. | β | 2021 | β |
| Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia. | Kim M et al. | β | 2021 | β |
| Breeding Strategy Shapes the Composition of Bacterial Communities in Female Nile Tilapia Reared in a Recirculating Aquaculture System. | Abdelhafiz Y et al. | β | 2021 | β |
| bric Γ brac controls sex pheromone choice by male European corn borer moths. | Unbehend M et al. | β | 2021 | β |
| Can Cross-Country Genomic Predictions Be a Reasonable Strategy to Support Germplasm Exchange? - A Case Study With Hydrogen Cyanide in Cassava. | Torres LG et al. | β | 2021 | β |
| Changes in selection pressure can facilitate hybridization during biological invasion in a Cuban lizard. | Bock DG et al. | β | 2021 | β |
| Chromosome-scale genome assembly and population genomics provide insights into the adaptation, domestication, and flavonoid metabolism of Chinese plum. | Huang Z et al. | β | 2021 | β |
| Comparative Signatures of Selection Analyses Identify Loci Under Positive Selection in the Murrah Buffalo of India. | Tyagi SK et al. | β | 2021 | β |
| Comparing a Mixed Model Approach to Traditional Stability Estimators for Mapping Genotype by Environment Interactions and Yield Stability in Soybean [<i>Glycine max</i> (L.) Merr.]. | Happ MM et al. | β | 2021 | β |
| Development of whole-genome prediction models to increase the rate of genetic gain in intermediate wheatgrass (Thinopyrum intermedium) breeding. | Crain J et al. | β | 2021 | β |
| Dissecting dynamics and differences of selective pressures in the evolution of human pigmentation. | Huang X et al. | β | 2021 | β |
| Divergent improvement of two cultivated allotetraploid cotton species. | Fang L et al. | β | 2021 | β |
| Efficient phasing and imputation of low-coverage sequencing data using large reference panels. | Rubinacci S et al. | β | 2021 | β |
| Elucidating the genetics of grain yield and stress-resilience in bread wheat using a large-scale genome-wide association mapping study with 55,568 lines. | Juliana P et al. | β | 2021 | β |
| Estimates of genomic inbreeding and identification of candidate regions that differ between Chinese indigenous sheep breeds. | Liu J et al. | β | 2021 | β |
| Evaluations of Genomic Prediction and Identification of New Loci for Resistance to Stripe Rust Disease in Wheat (<i>Triticum aestivum</i> L.). | Tomar V et al. | β | 2021 | β |
| Evidence of the interplay of genetics and culture in Ethiopia. | LΓ³pez S et al. | β | 2021 | β |
| False positive findings during genome-wide association studies with imputation: influence of allele frequency and imputation accuracy. | Zhang Z et al. | β | 2021 | β |
| Fast two-stage phasing of large-scale sequence data. | Browning BL et al. | β | 2021 | β |
| First genome-wide association study on rocuronium dose requirements shows association with SLCO1A2. | AhlstrΓΆm S et al. | β | 2021 | β |
| From gene banks to farmer's fields: using genomic selection to identify donors for a breeding program in rice to close the yield gap on smallholder farms. | Tanaka R et al. | β | 2021 | β |
| Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel. | Lyra DH et al. | β | 2021 | β |
| Genetic analysis on infrared-predicted milk minerals for Danish dairy cattle. | Zaalberg RM et al. | β | 2021 | β |
| Genetic ancestry changes in Stone to Bronze Age transition in the East European plain. | Saag L et al. | β | 2021 | β |
| Genetic Dissection of Hybrid Performance and Heterosis for Yield-Related Traits in Maize. | Li D et al. | β | 2021 | β |
| Genetic Origins and Sex-Biased Admixture of the Huis. | Ma X et al. | β | 2021 | β |
| Genetic Regulation of Biomarkers as Stress Proxies in Dairy Cows. | Milanesi M et al. | β | 2021 | β |
| Genetic variants for morningness in relation to habitual sleep-wake behavior and diurnal preference in a population-based sample of 17,243 adults. | Merikanto I et al. | β | 2021 | β |
| Genome-level diversification of eight ancient tea populations in the Guizhou and Yunnan regions identifies candidate genes for core agronomic traits. | Lu L et al. | β | 2021 | β |
| Genome structure variation analyses of peach reveal population dynamics and a 1.67βMb causal inversion for fruit shape. | Guan J et al. | β | 2021 | β |
| Genome-wide analyses reveal footprints of divergent selection and popping-related traits in CIMMYT's maize inbred lines. | Li J et al. | β | 2021 | β |
| Genome-wide association analysis for response of Senegalese sorghum accessions to Texas isolates of anthracnose. | Ahn E et al. | β | 2021 | β |
| Genome-Wide Association Study Identifies a Functional <i>SIDT2</i> Variant Associated With HDL-C (High-Density Lipoprotein Cholesterol) Levels and Premature Coronary Artery Disease. | LeΓ³n-Mimila P et al. | β | 2021 | β |
| Genome-Wide Association Study Identifies Genomic Regions for Important Morpho-Agronomic Traits in Mesoamerican Common Bean. | Delfini J et al. | β | 2021 | β |
| Genome-wide association study of individual sugar content in fruit of Japanese pear (Pyrus spp.). | Nishio S et al. | β | 2021 | β |
| Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology. | Mullins N et al. | β | 2021 | β |
| Genome-Wide Association Study Reveals Complex Genetic Architecture of Cadmium and Mercury Accumulation and Tolerance Traits in <i>Medicago truncatula</i>. | Paape T et al. | β | 2021 | β |
| Genome-Wide Detection of Runs of Homozygosity in Laiwu Pigs Revealed by Sequencing Data. | Fang Y et al. | β | 2021 | β |
| Genomic diversity and genome-wide association analysis related to yield and fatty acid composition of wild American oil palm. | Ithnin M et al. | β | 2021 | β |
| Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices. | Wolfe MD et al. | β | 2021 | β |
| Genomic prediction enables rapid selection of high-performing genets in an intermediate wheatgrass breeding program. | Crain J et al. | β | 2021 | β |
| Genomic Prediction of Grain Yield in a Barley MAGIC Population Modeling Genotype per Environment Interaction. | Puglisi D et al. | β | 2021 | β |
| Genomic Prediction Using LD-Based Haplotypes Inferred From High-Density Chip and Imputed Sequence Variants in Chinese Simmental Beef Cattle. | Li H et al. | β | 2021 | β |
| Genomic prediction using low-coverage portable Nanopore sequencing. | Lamb HJ et al. | β | 2021 | β |
| Genotyping-by-Sequencing-Based Genome-Wide Association Studies of Fusarium Wilt Resistance in Radishes (<i>Raphanus sativus</i> L.). | Lee ON et al. | β | 2021 | β |
| Glycine max NNL1 restricts symbiotic compatibility with widely distributed bradyrhizobia via root hair infection. | Zhang B et al. | β | 2021 | β |
| High quality genome of Erigeron breviscapus provides a reference for herbal plants in Asteraceae. | He S et al. | β | 2021 | β |
| High-resolution population-specific recombination rates and their effect on phasing and genotype imputation. | Hassan S et al. | β | 2021 | β |
| Impact of pre- and post-variant filtration strategies on imputation. | Charon C et al. | β | 2021 | β |
| Importance of HBsAg recognition by HLA molecules as revealed by responsiveness to different hepatitis B vaccines. | Nishida N et al. | β | 2021 | β |
| Increasing calling accuracy, coverage, and read-depth in sequence data by the use of haplotype blocks. | Pook T et al. | β | 2021 | β |
| Inference of Ancestries and Heterozygosity Proportion and Genotype Imputation in West African Cattle Populations. | Gebrehiwot NZ et al. | β | 2021 | β |
| Invasion and rapid adaptation of guppies (<i>Poecilia reticulata</i>) across the Hawaiian Archipelago. | Rosenthal WC et al. | β | 2021 | β |
| Investigating the impact of reference assembly choice on genomic analyses in a cattle breed. | Lloret-Villas A et al. | β | 2021 | β |
| Large-scale genomic analysis reveals the genetic cost of chicken domestication. | Wang MS et al. | β | 2021 | β |
| Machine learning, transcriptome, and genotyping chip analyses provide insights into SNP markers identifying flower color in Platycodon grandiflorus. | Yu GE et al. | β | 2021 | β |
| Manipulating assimilate availability provides insight into the genes controlling grain size in sorghum. | Tao Y et al. | β | 2021 | β |
| Meta-analysis identifies pleiotropic loci controlling phenotypic trade-offs in sorghum. | Mural RV et al. | β | 2021 | β |
| Meta-analysis of genome-wide association studies reveal common loci controlling agronomic and quality traits in a wide range of normal and heat stressed environments. | Joukhadar R et al. | β | 2021 | β |
| Meta-GWAS for quantitative trait loci identification in soybean. | Shook JM et al. | β | 2021 | β |
| Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing. | Cagirici HB et al. | β | 2021 | β |
| Natural variation in plant telomere length is associated with flowering time. | Choi JY et al. | β | 2021 | β |
| Natural variation in the regulation of neurodevelopmental genes modifies flight performance in Drosophila. | Spierer AN et al. | β | 2021 | β |
| Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea. | Thudi M et al. | β | 2021 | β |
| Patterns of genetic connectedness between modern and medieval Estonian genomes reveal the origins of a major ancestry component of the Finnish population. | Kivisild T et al. | β | 2021 | β |
| Phenotyping stomatal closure by thermal imaging for GWAS and TWAS of water use efficiency-related genes. | Pignon CP et al. | β | 2021 | β |
| Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation. | Gao Y et al. | β | 2021 | β |
| Polygenic risk scores for low-density lipoprotein cholesterol and familial hypercholesterolemia. | Nomura A et al. | β | 2021 | β |
| Population-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor. | Yu Y et al. | β | 2021 | β |
| Positive selection signatures in Anqing six-end-white pig population based on reduced-representation genome sequencing data. | Guo L et al. | β | 2021 | β |
| Privacy-preserving genotype imputation in a trusted execution environment. | Dokmai N et al. | β | 2021 | β |
| Protein-coding repeat polymorphisms strongly shape diverse human phenotypes. | Mukamel RE et al. | β | 2021 | β |
| Rapid genotype imputation from sequence with reference panels. | Davies RW et al. | β | 2021 | β |
| Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine. | Juang JJ et al. | β | 2021 | β |
| Resequencing of 672 Native Rice Accessions to Explore Genetic Diversity and Trait Associations in Vietnam. | Higgins J et al. | β | 2021 | β |
| Selection for environmental variance of litter size in rabbits involves genes in pathways controlling animal resilience. | Casto-Rebollo C et al. | β | 2021 | β |
| Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics. | Torkamaneh D et al. | β | 2021 | β |
| Spatial population genomics of a recent mosquito invasion. | Schmidt TL et al. | β | 2021 | β |
| The Genes of Freedom: Genome-Wide Insights into Marronage, Admixture and Ethnogenesis in the Gulf of Guinea. | Almeida J et al. | β | 2021 | β |
| The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests. | Ng KKS et al. | β | 2021 | β |
| The inheritance of anthracnose (Colletotrichum sublineola) resistance in sorghum differential lines QL3 and IS18760. | Cuevas HE et al. | β | 2021 | β |
| The timing of human adaptation from Neanderthal introgression. | Yair S et al. | β | 2021 | β |
| Towards a Cost-Effective Implementation of Genomic Prediction Based on Low Coverage Whole Genome Sequencing in Dezhou Donkey. | Zhao C et al. | β | 2021 | β |
| Trait-specific Selection Signature Detection Reveals Novel Loci of Meat Quality in Large White Pigs. | Shen Y et al. | β | 2021 | β |
| Transethnic analysis of the human leukocyte antigen region for ulcerative colitis reveals not only shared but also ethnicity-specific disease associations. | Degenhardt F et al. | β | 2021 | β |
| TWAS results are complementary to and less affected by linkage disequilibrium than GWAS. | Li D et al. | β | 2021 | β |
| Uncovering candidate genes involved in photosynthetic capacity using unexplored genetic variation in Spring Wheat. | Joynson R et al. | β | 2021 | β |
| Using off-target data from whole-exome sequencing to improve genotyping accuracy, association analysis and polygenic risk prediction. | Dou J et al. | β | 2021 | β |
| Validation of the Prediction Accuracy for 13 Traits in Chinese Simmental Beef Cattle Using a Preselected Low-Density SNP Panel. | Xu L et al. | β | 2021 | β |
| Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses. | Barton AR et al. | β | 2021 | β |
| Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions. | RamΓrez-Ayala LC et al. | β | 2021 | β |
| 863 genomes reveal the origin and domestication of chicken. | Wang MS et al. | β | 2020 | β |
| Accuracy of whole-genome sequence imputation using hybrid peeling in large pedigreed livestock populations. | Ros-Freixedes R et al. | β | 2020 | β |
| A complex phenotype in salmon controlled by a simple change in migratory timing. | Thompson NF et al. | β | 2020 | β |
| Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats. | Gileta AF et al. | β | 2020 | β |
| A fast-linear mixed model for genome-wide haplotype association analysis: application to agronomic traits in maize. | Chen H et al. | β | 2020 | β |
| A Genetic Variant in the BCL2 Gene Associates with Adalimumab Response in Hidradenitis Suppurativa Clinical Trials and Regulates Expression of BCL2. | Liu M et al. | β | 2020 | β |
| A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. | Mamidi S et al. | β | 2020 | β |
| A Genome-Wide Association Study To Understand the Effect of <i>Fusarium verticillioides</i> Infection on Seedlings of a Maize Diversity Panel. | Stagnati L et al. | β | 2020 | β |
| A <i>CNTNAP1</i> Missense Variant Is Associated with Canine Laryngeal Paralysis and Polyneuropathy. | Letko A et al. | β | 2020 | β |
| Ancient Hybridization with an Unknown Population Facilitated High-Altitude Adaptation of Canids. | Wang MS et al. | β | 2020 | β |
| Animal-ImputeDB: a comprehensive database with multiple animal reference panels for genotype imputation. | Yang W et al. | β | 2020 | β |
| Antagonistic regulation of the gibberellic acid response during stem growth in rice. | Nagai K et al. | β | 2020 | β |
| A sorghum practical haplotype graph facilitates genome-wide imputation and cost-effective genomic prediction. | Jensen SE et al. | β | 2020 | β |
| Assessing the power of principal components and wright's fixation index analyzes applied to reveal the genome-wide genetic differences between herds of Holstein cows. | Smaragdov MG et al. | β | 2020 | β |
| Assessment of haptoglobin alleles in autism spectrum disorders. | Cupaioli FA et al. | β | 2020 | β |
| Bovine breed-specific augmented reference graphs facilitate accurate sequence read mapping and unbiased variant discovery. | Crysnanto D et al. | β | 2020 | β |
| BWGS: A R package for genomic selection and its application to a wheat breeding programme. | Charmet G et al. | β | 2020 | β |
| Candidate genes and gene markers for the resistance to porcine pleuropneumonia. | Nietfeld F et al. | β | 2020 | β |
| Characterizing introgression-by-environment interactions using maize near isogenic lines. | Li Z et al. | β | 2020 | β |
| Choosing the optimal population for a genome-wide association study: A simulation of whole-genome sequences from rice. | Hamazaki K et al. | β | 2020 | β |
| Combining focused identification of germplasm and core collection strategies to identify genebank accessions for central European soybean breeding. | Haupt M et al. | β | 2020 | β |
| Combining Partially Overlapping Multi-Omics Data in Databases Using Relationship Matrices. | Akdemir D et al. | β | 2020 | β |
| Comparing the diversity of the casein genes in the Asian mouflon and domestic sheep. | Luigi-Sierra MG et al. | β | 2020 | β |
| Complement genes contribute sex-biased vulnerability in diverse disorders. | Kamitaki N et al. | β | 2020 | β |
| Comprehensive Genome-Wide Association Analysis Reveals the Genetic Basis of Root System Architecture in Soybean. | Seck W et al. | β | 2020 | β |
| Conserved defense responses between maize and sorghum to Exserohilum turcicum. | Zhang X et al. | β | 2020 | β |
| Dissecting the Genetic Architecture of Aphanomyces Root Rot Resistance in Lentil by QTL Mapping and Genome-Wide Association Study. | Ma Y et al. | β | 2020 | β |
| Divergent Selection and Primary Gene Flow Shape Incipient Speciation of a Riparian Tree on Hawaii Island. | Choi JY et al. | β | 2020 | β |
| Diverse types of genomic evidence converge on alcohol use disorder risk genes. | Dai Y et al. | β | 2020 | β |
| Enhancing Crop Domestication Through Genomic Selection, a Case Study of Intermediate Wheatgrass. | Crain J et al. | β | 2020 | β |
| Equine Genotyping Arrays. | Schaefer RJ et al. | β | 2020 | β |
| Evaluating genotype imputation pipeline for ultra-low coverage ancient genomes. | Hui R et al. | β | 2020 | β |
| Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling. | Ros-Freixedes R et al. | β | 2020 | β |
| Exploring the Potential Genetic Heterogeneity in the Incidence of Hoof Disorders in Austrian Fleckvieh and Braunvieh Cattle. | KosiΕska-Selbi B et al. | β | 2020 | β |
| Functional QTL mapping and genomic prediction of canopy height in wheat measured using a robotic field phenotyping platform. | Lyra DH et al. | β | 2020 | β |
| GEN2VCF: a converter for human genome imputation output format to VCF format. | Shin DM et al. | β | 2020 | β |
| Genetic Analysis of Domestication Parallels in Annual and Perennial Sunflowers (<i>Helianthus</i> spp.): Routes to Crop Development. | Asselin SR et al. | β | 2020 | β |
| Genetic analysis of orotic acid predicted with Fourier transform infrared milk spectra. | Zaalberg RM et al. | β | 2020 | β |
| Genetic analysis of the modern Australian labradoodle dog breed reveals an excess of the poodle genome. | Ali MB et al. | β | 2020 | β |
| Genetic and genomic analyses for predicted methane-related traits in Japanese Black steers. | Uemoto Y et al. | β | 2020 | β |
| Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency and component traits. | Zhang F et al. | β | 2020 | β |
| Genetic Diversity and Selection Signatures Within Diannan Small-Ear Pigs Revealed by Next-Generation Sequencing. | Wu F et al. | β | 2020 | β |
| Genetic Diversity, Nitrogen Fixation, and Water Use Efficiency in a Panel of Honduran Common Bean (<i>Phaseolus vulgaris</i> L.) Landraces and Modern Genotypes. | Wilker J et al. | β | 2020 | β |
| Genetics of Arthrogryposis and Macroglossia in Piemontese Cattle Breed. | Di Stasio L et al. | β | 2020 | β |
| Genetic variation associated with PPO-inhibiting herbicide tolerance in sorghum. | Adhikari P et al. | β | 2020 | β |
| Genome-Wide Association Study and Gene Specific Markers Identified 51 Genes or QTL for Resistance to Stripe Rust in U.S. Winter Wheat Cultivars and Breeding Lines. | Mu J et al. | β | 2020 | β |
| Genome-wide association study and genomic evaluation of feed efficiency traits in Japanese Black cattle using single-step genomic best linear unbiased prediction method. | Takeda M et al. | β | 2020 | β |
| Genome-wide association study applied to type traits related to milk yield in water buffaloes (Bubalus bubalis). | Gonzalez Guzman JL et al. | β | 2020 | β |
| Genome-wide association study of the level of blood components in Pekin ducks. | Zhu F et al. | β | 2020 | β |
| Genome-wide association study on Fourier transform infrared milk spectra for two Danish dairy cattle breeds. | Zaalberg RM et al. | β | 2020 | β |
| Genomic Dissection of Anthracnose (<i>Colletotrichum sublineolum</i>) Resistance Response in Sorghum Differential Line SC112-14. | Cruet-Burgos CM et al. | β | 2020 | β |
| Genomic diversity and population structure of the indigenous Greek and Cypriot cattle populations. | Papachristou D et al. | β | 2020 | β |
| Genomic prediction applied to multiple traits and environments in second season maize hybrids. | de Oliveira AA et al. | β | 2020 | β |
| Genomic prediction with a maize collaborative panel: identification of genetic resources to enrich elite breeding programs. | Allier A et al. | β | 2020 | β |
| Genomic regions associated with important seed quality traits in food-grade soybeans. | Whiting RM et al. | β | 2020 | β |
| Genomic regions influencing intramuscular fat in divergently selected rabbit lines. | Sosa-Madrid BS et al. | β | 2020 | β |
| Genomics of sorghum local adaptation to a parasitic plant. | Bellis ES et al. | β | 2020 | β |
| Genotype imputation using the Positional Burrows Wheeler Transform. | Rubinacci S et al. | β | 2020 | β |
| Haplotype Block Analysis Reveals Candidate Genes and QTLs for Meat Quality and Disease Resistance in Chinese Jiangquhai Pig Breed. | Oyelami FO et al. | β | 2020 | β |
| Identification and validation of a novel candidate gene regulating net meat weight in Simmental beef cattle based on imputed next-generation sequencing. | Bordbar F et al. | β | 2020 | β |
| Identification of Ear Morphology Genes in Maize (<i>Zea mays</i> L.) Using Selective Sweeps and Association Mapping. | Li T et al. | β | 2020 | β |
| Identification of functional mutations associated with environmental variance of litter size in rabbits. | Casto-Rebollo C et al. | β | 2020 | β |
| Identification of loci controlling adaptation in Chinese soya bean landraces via a combination of conventional and bioclimatic GWAS. | Li YH et al. | β | 2020 | β |
| Identification of Stripe Rust Resistance Loci in U.S. Spring Wheat Cultivars and Breeding Lines Using Genome-Wide Association Mapping and <i>Yr</i> Gene Markers. | Liu L et al. | β | 2020 | β |
| Improving Imputation Quality in BEAGLE for Crop and Livestock Data. | Pook T et al. | β | 2020 | β |
| Improving root characterisation for genomic prediction in cassava. | Yonis BO et al. | β | 2020 | β |
| Imputation of 3 million SNPs in the Arabidopsis regional mapping population. | Arouisse B et al. | β | 2020 | β |
| Incorporating Genome Annotation Into Genomic Prediction for Carcass Traits in Chinese Simmental Beef Cattle. | Xu L et al. | β | 2020 | β |
| Increased Power and Accuracy of Causal Locus Identification in Time Series Genome-wide Association in Sorghum. | Miao C et al. | β | 2020 | β |
| Incursion pathways of the Asian tiger mosquito (Aedes albopictus) into Australia contrast sharply with those of the yellow fever mosquito (Aedes aegypti). | Schmidt TL et al. | β | 2020 | β |
| In-Depth Analysis of Genetic Variation Associated with Severe West Nile Viral Disease. | Cahill ME et al. | β | 2020 | β |
| Insights into human genetic variation and population history from 929 diverse genomes. | BergstrΓΆm A et al. | β | 2020 | β |
| Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration. | Orozco LD et al. | β | 2020 | β |
| Key Traits and Genes Associate with Salinity Tolerance Independent from Vigor in Cultivated Sunflower. | Temme AA et al. | β | 2020 | β |
| Large-scale GWAS in sorghum reveals common genetic control of grain size among cereals. | Tao Y et al. | β | 2020 | β |
| Low Additive Genetic Variation in a Trait Under Selection in Domesticated Rice. | Karavolias NG et al. | β | 2020 | β |
| Meta-analysis of GWAS in canola blackleg (Leptosphaeria maculans) disease traits demonstrates increased power from imputed whole-genome sequence. | Fikere M et al. | β | 2020 | β |
| Multi-omics-data-assisted genomic feature markers preselection improves the accuracy of genomic prediction. | Ye S et al. | β | 2020 | β |
| Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice. | Choi JY et al. | β | 2020 | β |
| Natural variation in the regulation of neurodevelopmental genes modifies flight performance in<i>Drosophila</i> | Spierer AN et al. | β | 2020 | β |
| New Insights From Imputed Whole-Genome Sequence-Based Genome-Wide Association Analysis and Transcriptome Analysis: The Genetic Mechanisms Underlying Residual Feed Intake in Chickens. | Ye S et al. | β | 2020 | β |
| New QTLs for Spot Blotch Disease Resistance in Wheat (<i>Triticum aestivum</i> L.) Using Genome-Wide Association Mapping. | Tomar V et al. | β | 2020 | β |
| Novel Bayesian Networks for Genomic Prediction of Developmental Traits in Biomass Sorghum. | Dos Santos JPR et al. | β | 2020 | β |
| Novel Genomic Regions Associated with Intramuscular Fatty Acid Composition in Rabbits. | Laghouaouta H et al. | β | 2020 | β |
| Novel strategies for genomic prediction of untested single-cross maize hybrids using unbalanced historical data. | Dias KOG et al. | β | 2020 | β |
| Optimizing genomic prediction model given causal genes in a dairy cattle population. | Teng J et al. | β | 2020 | β |
| Optimizing genomic selection for blight resistance in American chestnut backcross populations: A trade-off with American chestnut ancestry implies resistance is polygenic. | Westbrook JW et al. | β | 2020 | β |
| Partial Support for an Interaction Between a Polygenic Risk Score for Major Depressive Disorder and Prenatal Maternal Depressive Symptoms on Infant Right Amygdalar Volumes. | Acosta H et al. | β | 2020 | β |
| Population genomics of two invasive mosquitoes (Aedes aegypti and Aedes albopictus) from the Indo-Pacific. | Schmidt TL et al. | β | 2020 | β |
| Population structure of Nepali spring wheat (Triticum aestivum L.) germplasm. | Khadka K et al. | β | 2020 | β |
| Prediction of genomic breeding values based on pre-selected SNPs using ssGBLUP, WssGBLUP and BayesB for Edwardsiellosis resistance in Japanese flounder. | Lu S et al. | β | 2020 | β |
| Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder. | Yousaf A et al. | β | 2020 | β |
| Sequence-based mapping identifies a candidate transcription repressor underlying awn suppression at the B1 locus in wheat. | DeWitt N et al. | β | 2020 | β |
| Sequenced-based paternity analysis to improve breeding and identify self-incompatibility loci in intermediate wheatgrass (Thinopyrum intermedium). | Crain J et al. | β | 2020 | β |
| Sequencing and imputation in GWAS: Cost-effective strategies to increase power and genomic coverage across diverse populations. | Quick C et al. | β | 2020 | β |
| Sex-specific association between infant caudate volumes and a polygenic risk score for major depressive disorder. | Acosta H et al. | β | 2020 | β |
| The origin of domestication genes in goats. | Zheng Z et al. | β | 2020 | β |
| The role of polygenic risk and susceptibility genes in breast cancer over the course of life. | Mars N et al. | β | 2020 | β |
| The strength and pattern of natural selection on gene expression in rice. | Groen SC et al. | β | 2020 | β |
| Trans-biobank analysis with 676,000 individuals elucidates the association of polygenic risk scores of complex traits with human lifespan. | Sakaue S et al. | β | 2020 | β |
| Validating loci associated with bovine respiratory disease complex in pre-weaned Holstein calves. | Kiser JN et al. | β | 2020 | β |
| Wheat individual grain-size variance originates from crop development and from specific genetic determinism. | Beral A et al. | β | 2020 | β |
| Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs. | Bianchi M et al. | β | 2020 | β |
| Whole genome resequencing reveals an association of ABCC4 variants with preaxial polydactyly in pigs. | Ma C et al. | β | 2020 | β |
| Accurate sequence variant genotyping in cattle using variation-aware genome graphs. | Crysnanto D et al. | β | 2019 | β |
| Additive and heterozygous (dis)advantage GWAS models reveal candidate genes involved in the genotypic variation of maize hybrids to Azospirillum brasilense. | Vidotti MS et al. | β | 2019 | β |
| A Genome Wide Association Study Reveals Markers and Genes Associated with Resistance to <i>Fusarium verticillioides</i> Infection of Seedlings in a Maize Diversity Panel. | Stagnati L et al. | β | 2019 | β |
| A mutation in MAP2 is associated with prenatal hair follicle density. | Jiang Y et al. | β | 2019 | β |
| Ancient Hybridization and Adaptive Introgression of an Invadolysin Gene in Schistosome Parasites. | Platt RN et al. | β | 2019 | β |
| An Integrated Genotyping-by-Sequencing Polymorphism Map for Over 10,000 Sorghum Genotypes. | Hu Z et al. | β | 2019 | β |
| An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice. | Castro JP et al. | β | 2019 | β |
| Apple whole genome sequences: recent advances and new prospects. | Peace CP et al. | β | 2019 | β |
| A QTL for Number of Teats Shows Breed Specific Effects on Number of Vertebrae in Pigs: Bridging the Gap Between Molecular and Quantitative Genetics. | van Son M et al. | β | 2019 | β |
| Association genetics of bunch weight and its component traits in East African highland banana (Musa spp. AAA group). | Nyine M et al. | β | 2019 | β |
| Association of imputed prostate cancer transcriptome with disease risk reveals novel mechanisms. | Emami NC et al. | β | 2019 | β |
| Benchmarking variant identification tools for plant diversity discovery. | Wu X et al. | β | 2019 | β |
| Candidate genes associated with the heritable humoral response to Mycobacterium avium ssp. paratuberculosis in dairy cows have factors in common with gastrointestinal diseases in humans. | McGovern SP et al. | β | 2019 | β |
| Canine Cancer Genomics: Lessons for Canine and Human Health. | Ostrander EA et al. | β | 2019 | β |
| Cassava yield traits predicted by genomic selection methods. | Andrade LRB et al. | β | 2019 | β |
| Chromosomal inversions associated with environmental adaptation in honeybees. | Christmas MJ et al. | β | 2019 | β |
| Comparison and assessment of family- and population-based genotype imputation methods in large pedigrees. | Ullah E et al. | β | 2019 | β |
| Comparison of genotype imputation strategies using a combined reference panel for chicken population. | Ye S et al. | β | 2019 | β |
| Construction and benchmarking of a multi-ethnic reference panel for the imputation of HLA class I and II alleles. | Degenhardt F et al. | β | 2019 | β |
| Contrasting Paternal and Maternal Genetic Histories of Thai and Lao Populations. | Kutanan W et al. | β | 2019 | β |
| Deep sampling of Hawaiian <i>Caenorhabditis elegans</i> reveals high genetic diversity and admixture with global populations. | Crombie TA et al. | β | 2019 | β |
| Detection of First Marker Trait Associations for Resistance Against <i>Sclerotinia sclerotiorum</i> in <i>Brassica juncea</i>-<i>Erucastrum cardaminoides</i> Introgression Lines. | Rana K et al. | β | 2019 | β |
| Differential effects on neurodevelopment of FTO variants in obesity and bipolar disorder suggested by in silico prediction of functional impact: An analysis in Mexican population. | Saucedo-Uribe E et al. | β | 2019 | β |
| Evaluating the Accuracy of Imputation Methods in a Five-Way Admixed Population. | Schurz H et al. | β | 2019 | β |
| Evaluation of Genomic Selection for Seven Economic Traits in Yellow Drum (Nibea albiflora). | Liu G et al. | β | 2019 | β |
| Finding the Optimal Imputation Strategy for Small Cattle Populations. | KorkuΔ P et al. | β | 2019 | β |
| Fine-scale haplotype mapping of MUT, AACS, SLC6A15 and PRKCA genes indicates association with insulin resistance of metabolic syndrome and relationship with branched chain amino acid metabolism or regulation. | Haydar S et al. | β | 2019 | β |
| Generating High Density, Low Cost Genotype Data in Soybean [<i>Glycine max</i> (L.) Merr.]. | Happ MM et al. | β | 2019 | β |
| Genetic analyses of human fetal retinal pigment epithelium gene expression suggest ocular disease mechanisms. | Liu B et al. | β | 2019 | β |
| Genetic analysis of Fourier transform infrared milk spectra in Danish Holstein and Danish Jersey. | Zaalberg RM et al. | β | 2019 | β |
| Genetic Architecture of Chilling Tolerance in Sorghum Dissected with a Nested Association Mapping Population. | Marla SR et al. | β | 2019 | β |
| Genetic association and transcriptome integration identify contributing genes and tissues at cystic fibrosis modifier loci. | Gong J et al. | β | 2019 | β |
| Genetic contributors to serum uric acid levels in Mexicans and their effect on premature coronary artery disease. | Macias-Kauffer LR et al. | β | 2019 | β |
| Genetic Control of Expression and Splicing in Developing Human Brain Informs Disease Mechanisms. | Walker RL et al. | β | 2019 | β |
| Genetic screening for Bartter syndrome and Gitelman syndrome pathogenic genes among individuals with hypertension and hypokalemia. | Bao M et al. | β | 2019 | β |
| Genome wide association analysis of sorghum mini core lines regarding anthracnose, downy mildew, and head smut. | Ahn E et al. | β | 2019 | β |
| Genome-wide associations and functional gene analyses for endoparasite resistance in an endangered population of native German Black Pied cattle. | May K et al. | β | 2019 | β |
| Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2. | Hernandez Cordero AI et al. | β | 2019 | β |
| Genome-wide association studies for 30 haematological and blood clinical-biochemical traits in Large White pigs reveal genomic regions affecting intermediate phenotypes. | Bovo S et al. | β | 2019 | β |
| Genome-wide association studies revealed candidate genes for tail fat deposition and body size in the Hulun Buir sheep. | Zhang T et al. | β | 2019 | β |
| Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens. | Kudinov AA et al. | β | 2019 | β |
| Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations. | Kranzler HR et al. | β | 2019 | β |
| Genome-wide association study of breakfast skipping links clock regulation with food timing. | Dashti HS et al. | β | 2019 | β |
| Genome-Wide Association Study of Growth and Feeding Traits in Pekin Ducks. | Zhu F et al. | β | 2019 | β |
| Genome-wide association study of normal and atypical progesterone profiles in Holstein-Friesian dairy cows. | Nyman S et al. | β | 2019 | β |
| Genome-wide association study reveals novel loci associated with body size and carcass yields in Pekin ducks. | Deng MT et al. | β | 2019 | β |
| Genome-wide genetic diversity is maintained through decades of soybean breeding in Canada. | Bruce RW et al. | β | 2019 | β |
| Genomic analyses of an extensive collection of wild and cultivated accessions provide new insights into peach breeding history. | Li Y et al. | β | 2019 | β |
| Genomic analysis of the origins of extant casein variation in goats. | Guan D et al. | β | 2019 | β |
| Genomic architecture and introgression shape a butterfly radiation. | Edelman NB et al. | β | 2019 | β |
| Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites. | Colonna V et al. | β | 2019 | β |
| Genomic signatures of adaptation to Sahelian and Soudanian climates in sorghum landraces of Senegal. | Faye JM et al. | β | 2019 | β |
| Genomic structure and diversity of Plasmodium falciparum in Southeast Asia reveal recent parasite migration patterns. | Shetty AC et al. | β | 2019 | β |
| Genotyping by low-coverage whole-genome sequencing in intercross pedigrees from outbred founders: a cost-efficient approach. | Zan Y et al. | β | 2019 | β |
| Germline-Encoded TCR-MHC Contacts Promote TCR V Gene Bias in Umbilical Cord Blood T Cell Repertoire. | Gao K et al. | β | 2019 | β |
| HaploBlocker: Creation of Subgroup-Specific Haplotype Blocks and Libraries. | Pook T et al. | β | 2019 | β |
| High-resolution genetic mapping of putative causal interactions between regions of open chromatin. | Kumasaka N et al. | β | 2019 | β |
| High Resolution Mapping of <i>Rph</i> <sub><i>MBR</i>1012</sub> Conferring Resistance to <i>Puccinia hordei</i> in Barley (<i>Hordeum vulgare</i> L.). | Fazlikhani L et al. | β | 2019 | β |
| High risk Epstein-Barr virus variants characterized by distinct polymorphisms in the EBER locus are strongly associated with nasopharyngeal carcinoma. | Hui KF et al. | β | 2019 | β |
| High-Throughput Phenotyping Enabled Genetic Dissection of Crop Lodging in Wheat. | Singh D et al. | β | 2019 | β |
| Historical Introgressions from a Wild Relative of Modern Cassava Improved Important Traits and May Be Under Balancing Selection. | Wolfe MD et al. | β | 2019 | β |
| Identification of muscle-specific candidate genes in Simmental beef cattle using imputed next generation sequencing. | Bordbar F et al. | β | 2019 | β |
| Identification of transcriptome-wide, nut weight-associated SNPs in Castanea crenata. | Kang MJ et al. | β | 2019 | β |
| Identifying loci with breeding potential across temperate and tropical adaptation via EigenGWAS and EnvGWAS. | Li J et al. | β | 2019 | β |
| Identifying Selection Signatures for Backfat Thickness in Yorkshire Pigs Highlights New Regions Affecting Fat Metabolism. | Ma H et al. | β | 2019 | β |
| Imputation of behavioral candidate gene repeat variants in 486,551 publicly-available UK Biobank individuals. | Border R et al. | β | 2019 | β |
| Imputation of canine genotype array data using 365 whole-genome sequences improves power of genome-wide association studies. | Hayward JJ et al. | β | 2019 | β |
| Imputation to whole-genome sequence using multiple pig populations and its use in genome-wide association studies. | van den Berg S et al. | β | 2019 | β |
| Joint imputation of whole-genome sequence variants and large chromosomal deletions in cattle. | Mesbah-Uddin M et al. | β | 2019 | β |
| Kernel size-related genes revealed by an integrated eQTL analysis during early maize kernel development. | Pang J et al. | β | 2019 | β |
| Kinpute: using identity by descent to improve genotype imputation. | Abney M et al. | β | 2019 | β |
| Mitochondria, sex and variation in routine metabolic rate. | Healy TM et al. | β | 2019 | β |
| Molecular and genetic analysis of defensive responses of Brassica juncea - B. fruticulosa introgression lines to Sclerotinia infection. | Atri C et al. | β | 2019 | β |
| Molecular diversity and selective sweeps in maize inbred lines adapted to African highlands. | Wegary D et al. | β | 2019 | β |
| Multiple QTL underlie milk phenotypes at the CSF2RB locus. | Lopdell TJ et al. | β | 2019 | β |
| No association between common genetic variation in FOXP2 and language impairment in schizophrenia. | McCarthy NS et al. | β | 2019 | β |
| Optimal Designs for Genomic Selection in Hybrid Crops. | Guo T et al. | β | 2019 | β |
| Optimising the identification of causal variants across varying genetic architectures in crops. | Miao C et al. | β | 2019 | β |
| Phasing quality assessment in a brown layer population through family- and population-based software. | Frioni N et al. | β | 2019 | β |
| Phenotypic and Genomic Local Adaptation across Latitude and Altitude in Populus trichocarpa. | Zhang M et al. | β | 2019 | β |
| Population Substructure Has Implications in Validating Next-Generation Cancer Genomics Studies with TCGA. | Miller MD et al. | β | 2019 | β |
| Protocols, Methods, and Tools for Genome-Wide Association Studies (GWAS) of Dental Traits. | Agler CS et al. | β | 2019 | β |
| QTL mapping and genome-wide prediction of heat tolerance in multiple connected populations of temperate maize. | Inghelandt DV et al. | β | 2019 | β |
| Rapid Communication: Genome-wide association analyses identify loci associated with colostrum production in Jersey cattle1. | Kiser JN et al. | β | 2019 | β |
| Rapid evolution of a retro-transposable hotspot of ovine genome underlies the alteration of BMP2 expression and development of fat tails. | Pan Z et al. | β | 2019 | β |
| Rediscover and Refine QTLs for Pig Scrotal Hernia by Increasing a Specially Designed F<sub>3</sub> Population and Using Whole-Genome Sequence Imputation Technology. | Xu W et al. | β | 2019 | β |
| Relationship Between Genetic Polymorphisms of the <i>TNF</i> Gene and Hallux Valgus Susceptibility. | Yang J et al. | β | 2019 | β |
| Relaxed Selection Limits Lifespan by Increasing Mutation Load. | Cui R et al. | β | 2019 | β |
| Repeated Evolution Versus Common Ancestry: Sex Chromosome Evolution in the Haplochromine Cichlid Pseudocrenilabrus philander. | BΓΆhne A et al. | β | 2019 | β |
| Rice Galaxy: an open resource for plant science. | Juanillas V et al. | β | 2019 | β |
| Selection and gene flow shape niche-associated variation in pheromone response. | Lee D et al. | β | 2019 | β |
| Selection footprints reflect genomic changes associated with breeding efforts in 56 cucumber inbred lines. | Liu B et al. | β | 2019 | β |
| Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice. | Bhandari A et al. | β | 2019 | β |
| Sequence imputation from low density single nucleotide polymorphism panel in a black poplar breeding population. | PΓ©gard M et al. | β | 2019 | β |
| Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection. | Gonda I et al. | β | 2019 | β |
| Single-plant GWAS coupled with bulk segregant analysis allows rapid identification and corroboration of plant-height candidate SNPs. | Gyawali A et al. | β | 2019 | β |
| SNP-based heritability and genetic architecture of tarsal osteochondrosis in North American Standardbred horses. | McCoy AM et al. | β | 2019 | β |
| Standing genetic variation as the predominant source for adaptation of a songbird. | Lai YT et al. | β | 2019 | β |
| Strategies for Obtaining and Pruning Imputed Whole-Genome Sequence Data for Genomic Prediction. | Ye S et al. | β | 2019 | β |
| Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance. | HΓΌbner S et al. | β | 2019 | β |
| Temporal variation in spatial genetic structure during population outbreaks: Distinguishing among different potential drivers of spatial synchrony. | Larroque J et al. | β | 2019 | β |
| The Arrival of Siberian Ancestry Connecting the Eastern Baltic to Uralic Speakers further East. | Saag L et al. | β | 2019 | β |
| The complex geography of domestication of the African rice Oryza glaberrima. | Choi JY et al. | β | 2019 | β |
| The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes. | Masonbrink R et al. | β | 2019 | β |
| Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice. | Chen J et al. | β | 2019 | β |
| Training population selection and use of fixed effects to optimize genomic predictions in a historical USA winter wheat panel. | Sarinelli JM et al. | β | 2019 | β |
| Unravelling the genetic loci for growth and carcass traits in Chinese Bamaxiang pigs based on a 1.4 million SNP array. | Gong H et al. | β | 2019 | β |
| Using environmental clustering to identify specific drought tolerance QTLs in bread wheat (T. aestivum L.). | Touzy G et al. | β | 2019 | β |
| Using Heterogeneous Stocks for Fine-Mapping Genetically Complex Traits. | Solberg Woods LC et al. | β | 2019 | β |
| Very low-depth whole-genome sequencing in complex trait association studies. | Gilly A et al. | β | 2019 | β |
| Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement. | Lu K et al. | β | 2019 | β |
| Widespread introgression in Chinese indigenous chicken breeds from commercial broiler. | Zhang C et al. | β | 2019 | β |
| Accuracy of Imputation of Microsatellite Markers from BovineSNP50 and BovineHD BeadChip in Hanwoo Population of Korea. | Sharma A et al. | β | 2018 | β |
| Accurate Genotype Imputation in Multiparental Populations from Low-Coverage Sequence. | Zheng C et al. | β | 2018 | β |
| An epistatic effect of KRT25 on SP6 is involved in curly coat in horses. | Thomer A et al. | β | 2018 | β |
| A One-Penny Imputed Genome from Next-Generation Reference Panels. | Browning BL et al. | β | 2018 | β |
| Applicability of Precision Medicine Approaches to Managing Hypertension in Rural Populations. | Halladay JR et al. | β | 2018 | β |
| Assessment of genetic diversity in Coho salmon (Oncorhynchus kisutch) populations with no family records using ddRAD-seq. | Hosoya S et al. | β | 2018 | β |
| Assessment of the performance of hidden Markov models for imputation in animal breeding. | Whalen A et al. | β | 2018 | β |
| A whole-genome sequence study identifies genetic risk factors for neuromyelitis optica. | Estrada K et al. | β | 2018 | β |
| Carotenoid Presence Is Associated with the <i>Or</i> Gene in Domesticated Carrot. | Ellison SL et al. | β | 2018 | β |
| Combining High-Throughput Phenotyping and Genomic Information to Increase Prediction and Selection Accuracy in Wheat Breeding. | Crain J et al. | β | 2018 | β |
| Construction of a genome-anchored, high-density genetic map for melon (Cucumis melo L.) and identification of Fusarium oxysporum f. sp. melonis race 1 resistance QTL. | Branham SE et al. | β | 2018 | β |
| Design of low density SNP chips for genotype imputation in layer chicken. | Herry F et al. | β | 2018 | β |
| Discovery of Anthocyanin Acyltransferase1 (AAT1) in Maize Using Genotyping-by-Sequencing (GBS). | Paulsmeyer MN et al. | β | 2018 | β |
| Distribution of runs of homozygosity in Chinese and Western pig breeds evaluated by reduced-representation sequencing data. | Zhang Z et al. | β | 2018 | β |
| eQTL discovery and their association with severe equine asthma in European Warmblood horses. | Mason VC et al. | β | 2018 | β |
| Extreme allelic heterogeneity at a Caenorhabditis elegans beta-tubulin locus explains natural resistance to benzimidazoles. | Hahnel SR et al. | β | 2018 | β |
| FADS1 and the Timing of Human Adaptation to Agriculture. | Mathieson S et al. | β | 2018 | β |
| Fine-mapping and functional studies highlight potential causal variants for rheumatoid arthritis and type 1 diabetes. | Westra HJ et al. | β | 2018 | β |
| Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of <i>ERAP2</i> transcripts under balancing selection. | Ye CJ et al. | β | 2018 | β |
| Genetic Dissection of End-Use Quality Traits in Adapted Soft White Winter Wheat. | Jernigan KL et al. | β | 2018 | β |
| Genetic signature to provide robust risk assessment of psoriatic arthritis development in psoriasis patients. | Patrick MT et al. | β | 2018 | β |
| Genome wide association analysis in a mouse advanced intercross line. | Gonzales NM et al. | β | 2018 | β |
| Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta. | Kayondo SI et al. | β | 2018 | β |
| Genome-Wide Association Mapping for Tolerance to Preharvest Sprouting and Low Falling Numbers in Wheat. | Martinez SA et al. | β | 2018 | β |
| Genome-wide association study identifies <i>ERBB4</i> on 2q34 as a novel locus associated with sperm motility in Japanese men. | Sato Y et al. | β | 2018 | β |
| Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations. | Endo C et al. | β | 2018 | β |
| Genome-wide association study of milk fatty acid composition in Italian Simmental and Italian Holstein cows using single nucleotide polymorphism arrays. | Palombo V et al. | β | 2018 | β |
| Genome-wide association study of self-reported food reactions in Japanese identifies shrimp and peach specific loci in the HLA-DR/DQ gene region. | Khor SS et al. | β | 2018 | β |
| Genome-wide association study of stem rust resistance in a world collection of cultivated barley. | Case AJ et al. | β | 2018 | β |
| Genome-wide variability and selection signatures in Italian island cattle breeds. | Cesarani A et al. | β | 2018 | β |
| Genomic analysis reveals genes affecting distinct phenotypes among different Chinese and western pig breeds. | Zhang Z et al. | β | 2018 | β |
| Genomic Analysis To Identify Signatures of Artificial Selection and Loci Associated with Important Economic Traits in Duroc Pigs. | Ma Y et al. | β | 2018 | β |
| Genomic approaches for studying crop evolution. | Schreiber M et al. | β | 2018 | β |
| Genomic prediction using an iterative conditional expectation algorithm for a fast BayesC-like model. | Dong L et al. | β | 2018 | β |
| Genomic Selection and Use of Molecular Tools in Breeding Programs for Indigenous and Crossbred Cattle in Developing Countries: Current Status and Future Prospects. | Mrode R et al. | β | 2018 | β |
| Genotype Imputation from Large Reference Panels. | Das S et al. | β | 2018 | β |
| Heat Stress Tolerance in Rice (<i>Oryza sativa</i> L.): Identification of Quantitative Trait Loci and Candidate Genes for Seedling Growth Under Heat Stress. | Kilasi NL et al. | β | 2018 | β |
| Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees. | Whalen A et al. | β | 2018 | β |
| Identification of Disease-Related Genes Using a Genome-Wide Association Study Approach. | Wohland T et al. | β | 2018 | β |
| Identifying artificial selection signals in the chicken genome. | Ma Y et al. | β | 2018 | β |
| Imputation-Aware Tag SNP Selection To Improve Power for Large-Scale, Multi-ethnic Association Studies. | Wojcik GL et al. | β | 2018 | β |
| Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population. | Ye S et al. | β | 2018 | β |
| Insights into respiratory disease through bioinformatics. | Hurgobin B et al. | β | 2018 | β |
| Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs. | Hirata T et al. | β | 2018 | β |
| Linking dendroecology and association genetics in natural populations: Stress responses archived in tree rings associate with SNP genotypes in silver fir (Abies alba Mill.). | Heer K et al. | β | 2018 | β |
| <i>TAS2R38</i> Predisposition to Bitter Taste Associated with Differential Changes in Vegetable Intake in Response to a Community-Based Dietary Intervention. | Calancie L et al. | β | 2018 | β |
| Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals. | Bouwman AC et al. | β | 2018 | β |
| Missing single nucleotide polymorphisms in Genetic Risk Scores: A simulation study. | Chagnon M et al. | β | 2018 | β |
| MYB1 transcription factor is a candidate responsible for red root skin in radish (Raphanus sativus L.). | Yi G et al. | β | 2018 | β |
| Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania. | Ravenhall M et al. | β | 2018 | β |
| Signatures of Insecticide Selection in the Genome of <i>Drosophila melanogaster</i>. | Duneau D et al. | β | 2018 | β |
| Statistical Detection of Relatives Typed with Disjoint Forensic and Biomedical Loci. | Kim J et al. | β | 2018 | β |
| Strategies for phasing and imputation in a population isolate. | Herzig AF et al. | β | 2018 | β |
| The feasibility of using low-density marker panels for genotype imputation and genomic prediction of crossbred dairy cattle of East Africa. | Aliloo H et al. | β | 2018 | β |
| The Genetic Architecture of Diet-Induced Hepatic Fibrosis in Mice. | Hui ST et al. | β | 2018 | β |
| TLR10 and NFKBIA contributed to the risk of hip osteoarthritis: systematic evaluation based on Han Chinese population. | Tang H et al. | β | 2018 | β |
| Tolerance traits related to climate change resilience are independent and polygenic. | Healy TM et al. | β | 2018 | β |
| Training Population Optimization for Prediction of Cassava Brown Streak Disease Resistance in West African Clones. | Ozimati A et al. | β | 2018 | β |
| Unravelling genetic variation underlying de novo-synthesis of bovine milk fatty acids. | Knutsen TM et al. | β | 2018 | β |
| Weak effects of common genetic variation in oxytocin and vasopressin receptor genes on rhesus macaque social behavior. | Madlon-Kay S et al. | β | 2018 | β |
| Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia. | Bai H et al. | β | 2018 | β |
| 10 Years of GWAS Discovery: Biology, Function, and Translation. | Visscher PM et al. | β | 2017 | β |
| A Dopamine Receptor genetic variant enhances perceptual speed in cognitive healthy subjects. | Barral S et al. | β | 2017 | β |
| A generalized Levene's scale test for variance heterogeneity in the presence of sample correlation and group uncertainty. | Soave D et al. | β | 2017 | β |
| A Guide to Genome-Wide Association Mapping in Plants. | Burghardt LT et al. | β | 2017 | β |
| Analysis of phylogenetic relationships and genome size evolution of the Amaranthus genus using GBS indicates the ancestors of an ancient crop. | Stetter MG et al. | β | 2017 | β |
| Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. | Svardal H et al. | β | 2017 | β |
| Application of pharmacogenomics to investigate adverse drug reactions to the disease-modifying treatments for multiple sclerosis: a case-control study protocol for dimethyl fumarate-induced lymphopenia. | Kowalec K et al. | β | 2017 | β |
| A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication. | Wu W et al. | β | 2017 | β |
| Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation. | Ramu P et al. | β | 2017 | β |
| Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms. | Guo MH et al. | β | 2017 | β |
| Continuity and Admixture in the Last Five Millennia of Levantine History from Ancient Canaanite and Present-Day Lebanese Genome Sequences. | Haber M et al. | β | 2017 | β |
| Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds. | Schaefer RJ et al. | β | 2017 | β |
| Dietary adaptation of FADS genes in Europe varied across time and geography. | Ye K et al. | β | 2017 | β |
| Discovery and genotyping of structural variation from long-read haploid genome sequence data. | Huddleston J et al. | β | 2017 | β |
| Dissecting evolution and disease using comparative vertebrate genomics. | Meadows JRS et al. | β | 2017 | β |
| Enhanced methods to detect haplotypic effects on gene expression. | Brown R et al. | β | 2017 | β |
| Estimation of kinship coefficient in structured and admixed populations using sparse sequencing data. | Dou J et al. | β | 2017 | β |
| Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle. | Pausch H et al. | β | 2017 | β |
| Exome sequence genotype imputation in globally diverse hexaploid wheat accessions. | Shi F et al. | β | 2017 | β |
| Extremely low-coverage whole genome sequencing in South Asians captures population genomics information. | Rustagi N et al. | β | 2017 | β |
| Fine Mapping, Transcriptome Analysis, and Marker Development for <i>Y<sub>2</sub></i> , the Gene That Conditions Ξ²-Carotene Accumulation in Carrot (<i>Daucus carota</i> L.). | Ellison S et al. | β | 2017 | β |
| GeneImp: Fast Imputation to Large Reference Panels Using Genotype Likelihoods from Ultralow Coverage Sequencing. | Spiliopoulou A et al. | β | 2017 | β |
| Genome-wide association mapping of resistance to a Brazilian isolate of Sclerotinia sclerotiorum in soybean genotypes mostly from Brazil. | Wei W et al. | β | 2017 | β |
| Genome-wide Association Studies for Female Fertility Traits in Chinese and Nordic Holsteins. | Liu A et al. | β | 2017 | β |
| Genome-wide association study confirm major QTL for backfat fatty acid composition on SSC14 in Duroc pigs. | van Son M et al. | β | 2017 | β |
| Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago. | Siska V et al. | β | 2017 | β |
| Genome-Wide Linkage Analysis of Large Multiple Multigenerational Families Identifies Novel Genetic Loci for Coronary Artery Disease. | Guo Y et al. | β | 2017 | β |
| Genome-Wide Linkage and Association Mapping of Halo Blight Resistance in Common Bean to Race 6 of the Globally Important Bacterial Pathogen. | Tock AJ et al. | β | 2017 | β |
| Genomics clarifies taxonomic boundaries in a difficult species complex. | Baumsteiger J et al. | β | 2017 | β |
| Genotype Calling from Population-Genomic Sequencing Data. | Maruki T et al. | β | 2017 | β |
| Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon. | Tsai HY et al. | β | 2017 | β |
| Identification of loci associated with susceptibility to subspecies () tissue infection in cattle. | Kiser JN et al. | β | 2017 | β |
| Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel. | Mitt M et al. | β | 2017 | β |
| Imputation-Based Whole-Genome Sequence Association Study Rediscovered the Missing QTL for Lumbar Number in Sutai Pigs. | Yan G et al. | β | 2017 | β |
| Linkage disequilibrium matches forensic genetic records to disjoint genomic marker sets. | Edge MD et al. | β | 2017 | β |
| LinkImputeR: user-guided genotype calling and imputation for non-model organisms. | Money D et al. | β | 2017 | β |
| Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance. | Cerqueira GC et al. | β | 2017 | β |
| Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation. | Brouard JS et al. | β | 2017 | β |
| Malaria was a weak selective force in ancient Europeans. | Gelabert P et al. | β | 2017 | β |
| Population Genomics in Wild Tomatoes-The Interplay of Divergence and Admixture. | Beddows I et al. | β | 2017 | β |
| The Terpene Synthase Gene Family of Carrot (<i>Daucus carota</i> L.): Identification of QTLs and Candidate Genes Associated with Terpenoid Volatile Compounds. | Keilwagen J et al. | β | 2017 | β |
| Transcriptional networks specifying homeostatic and inflammatory programs of gene expression in human aortic endothelial cells. | Hogan NT et al. | β | 2017 | β |
| Transcriptome Association Identifies Regulators of Wheat Spike Architecture. | Wang Y et al. | β | 2017 | β |
| Associations Between Common and Rare Exonic Genetic Variants and Serum Levels of 20 Cardiovascular-Related Proteins: The TromsΓΈ Study. | Solomon T et al. | β | 2016 | β |
| Bias Characterization in Probabilistic Genotype Data and Improved Signal Detection with Multiple Imputation. | Palmer C et al. | β | 2016 | β |
| Fast and accurate long-range phasing in a UK Biobank cohort. | Loh PR et al. | β | 2016 | β |
| Next-generation genotype imputation service and methods. | Das S et al. | β | 2016 | β |
| Population Genomics of Fungal and Oomycete Pathogens. | GrΓΌnwald NJ et al. | β | 2016 | β |
| Reference-based phasing using the Haplotype Reference Consortium panel. | Loh PR et al. | β | 2016 | β |
| Selective sweep on human amylase genes postdates the split with Neanderthals. | Inchley CE et al. | β | 2016 | β |
| The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length. | Cook DE et al. | β | 2016 | β |