Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration.
- Authors
- Xiang, Yangfei; Tanaka, Yoshiaki; Patterson, Benjamin; Kang, Young-Jin; Govindaiah, Gubbi; Roselaar, Naomi; Cakir, Bilal; Kim, Kun-Yong; Lombroso, Adam P; Hwang, Sung-Min; Zhong, Mei; Stanley, Edouard G; Elefanty, Andrew G; Naegele, Janice R; Lee, Sang-Hun; Weissman, Sherman M; Park, In-Hyun
- Year
- 2017
- Journal
- Cell stem cell
- PMID
- 28757360
- DOI
- 10.1016/j.stem.2017.07.007
- PMCID
- PMC5720381
Organoid techniques provide unique platforms to model brain development and neurological disorders. Whereas several methods for recapitulating corticogenesis have been described, a system modeling human medial ganglionic eminence (MGE) development, a critical ventral brain domain producing cortical interneurons and related lineages, has been lacking until recently. Here, we describe the generation of MGE and cortex-specific organoids from human pluripotent stem cells that recapitulate the development of MGE and cortex domains, respectively. Population and single-cell RNA sequencing (RNA-seq) profiling combined with bulk assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) analyses revealed transcriptional and chromatin accessibility dynamics and lineage relationships during MGE and cortical organoid development. Furthermore, MGE and cortical organoids generated physiologically functional neurons and neuronal networks. Finally, fusing region-specific organoids followed by live imaging enabled analysis of human interneuron migration and integration. Together, our study provides a platform for generating domain-specific brain organoids and modeling human interneuron migration and offers deeper insight into molecular dynamics during human brain development.
Generation of hMGEOs and hCOs(A) Schematic view of the methods for generating hMGEOs and hCOs from hPSCs.(B) Induction of NKX2-1-GFP in hMGEO and hCO culture systems at different developmentalstages. Scale bar, 125 ΞΌm.(C-E) Immunostaining and quantification of GFP, FOXG1, and PAX6 in dissociated culture ofhMGEOs and hCOs (day 21). Mean Β± SD for hMGEOs (n=10) and hCOs (n=9) are shown. Scalebar, 25 ΞΌm.(F) Typical interior cellular organization of hMGEOs (3 week old) and hCOs (4 week old). Scale bar,20 ΞΌm.(G) Morphology and size of hMGEOs and hCOs after 30 days and 70 days of culture. Scale bar, 4mm.See also Figure S1.
hMGEOs Recapitulate Human MGE Development(A-C) Immunostaining for SOX2 and GFP reveals the diminishment of VZ-like area in hMGEOs in a long-term culture. Scale bar, 50 ΞΌm.(D) Thickness quantification of VZ-like area in hMGEOs after 22 (n=21), 44 (n=32), and 71 (n=19) days of culture. The maximum diameter of each VZ-like area (indicated with arrows in the schematic diagram on the right) was used for quantification. Mean Β± SD are shown for each stage. ***, P<0.001.(E and F) Immunostaining for GFP, SOX2, and DLX2 of day 22 (E) and day 71 (F) hMGEOs sections. Scale bar, 25 ΞΌm.(G) Immunostaining for vGAT and GABA in 80 day old organoid section. Scale bar, 25 ΞΌm.(H) Schematic illustrating the modification of hMGEO protocol to test effect of various SHH doses on dorsal-ventral patterning.(I) Quantitative RT-qPCR analysis of NKX2-1 and SST expression. Mean Β± SD are shown for each condition (n=4). **, P<0.01; *, P<0.05.(J) Immunostaining for SST in 46 day old hMGEO sections. Scale bar, 25 ΞΌm.(K-M) Representative images showing migrating streaks interior of 75 day old hMGEOs. The migration directions are indicated with arrows. Immunostaining was performed for SOX2, NRP1, CXCR4, and GFP. Scale bar, 50 ΞΌm in K, 25 ΞΌm in L and M.See also Figure S1.
hCOs Recapitulate Human Dorsal Cortical Organization(A) Immunostaining for SOX2 and N-Cadherin in hCO section (40 day old). Arrows show potential oRGs outside of VZ-like area. Scale bar, 50 ΞΌm.(B and C) Immunostaining for SOX2, PAX6, Tuj1, and NeuN in hCO sections (40 day old). Arrows show potential oRGs outside of VZ-like areas. Scale bar, 50 ΞΌm.(D) GFAP staining in hCO section (40 day old). Arrow head: glial fibers; white arrow: vertically located RG cell; yellow arrow: horizontally located RG cell. Scale bar, 20 ΞΌm.(E) Quantification of position angle of RGs located at the lumen surface. Mean Β± SD are plotted (n=4 VZ-like area from 4 of 40 day old hCOs).(F) Immunostaining for phospho-histone H3 in hCOs section (4 week old). Scale bar, 50 ΞΌm.(G) Representative images of vertical, oblique, and horizontal cleavage of dividing RGs in VZ-like area of 4 week old hCOs section (left). Mean Β± SD are plotted for each category (n=42 cells). Scale bar, 10 ΞΌm.(H-J) Immunostaining for SOX2, GFAP, PAX6, TBR2, and FAM107A in hCO section (56 to 64 day old). Scale bar, 50 ΞΌm.(K) Immunostaining for Reelin in hCO section (64 day old). Scale bar, 25 ΞΌm.(L) Separation of deep layer CTIP2+ neurons and upper layer SATB2+ neurons in hCOs section. Scale bar, 50 ΞΌm.(M and N) Immunostaining for GFAP, NeuN, and MAP2 in hCO sections (105 day old). Scale bar, 25 ΞΌm.
Transcriptome and Chromatin Accessibility during hMGEOs and hCOs Development(A) Enrichment of tissue-specific genes. Enrichment and depletion are scaled by βlog10(FDR) andshown in yellow and blue colors, respectively.(B) Differentially-expressed genes during organoid development. Representative genes and GOterms (FDR<0.05) are shown in right panel.(C) Expression profile of key genes related to MGE and cortical development.(D) GSEA of gene signatures for in vivo embryonic brain region. Enrichment of gene signatures (-log10(FDR) in hCO and hMGEO is shown in blue and green, respectively.(E) Relationship between gene expression change and chromatin architecture during organoiddevelopment. Genes are sorted by log2(ratio) and the presence of dOCRs is shown by colors.(F) GO enrichment of target genes of dOCRs. βlog10(FDR) is colored in red.(G) ATAC-seq read distribution around TSS of in vivo MGE and cortex-specific gene signatures.See also Figure S2.
scRNA-seq Analysis of hMGEOs and hCOs(A) Strategy for scRNA-seq with Chromium System.(B-C) tSNE plot of single cells distinguished by (B) organoids and (C) annotation of clusters.(D) Expression patterns of markers for different cell types produced in hMGEOs and hCOs.(E) Percentage of cells from hMGEOs and hCOs in all clusters.(F) Differential expression of NKX2-1 between hMGEO- and hCO-derived interneurons. Average read count is normalized to that of hMGEO-derived interneurons.(G) Comparison of transcriptome between hMGEO- and hCO-derived interneurons. Genes with -log10(p-value) >= 100 are shown in violet (hMGEO) and blue (hCO).(H) Ratio of cells clustered into each annotation.(I) Immunostaining and quantification for OLIG1 in 81 day old sections of hMGEOs and hCOs. Mean Β± SD are plotted for each condition. Sections from 8 hMGEOs and 9 hCOs were used for quantification.(J) Co-expression network of transcriptional and epigenetic regulators. Edge size represents Pearson correlation coefficient. Node size represents the number of connections. Examples of edge and node sizes are also shown in box.See also Figure S3 and S4.
Efficient Functional Maturation of hMGEOs(A) Schematic view of the methods for calcium imaging of intact hMGEOs.(B) Representative image showing cells expressing hsyn-GCaMP6s in intact 42 day old hMGEOs. The single cell tracings of calcium transient (region of interest (ROI) indicated on top) are shown, which are blocked by application of TTX (1 ΞΌM). Scale bar, 25 ΞΌm.(C) Representative image of area-scale calcium imaging in intact 45 day old hMGEOs. The synchronized calcium surges are indicated with arrows. Time is shown in min:sec. Scale bar, 100 ΞΌm.(D and E) Calcium imaging of synchronized area (C) at single cell level. ROIs are indicated (D) and tracings of single cell calcium surges are shown (E). Time is shown as min: sec. Scale bar, 25 ΞΌm.(F) Synchronization matrix of calcium surges from recorded single neurons in intact 45 day old hMGEOs.(G) Area-scale calcium imaging reveals bicuculline disinhibition enhanced area synchronization of calcium surges in intact hMGEOs (47 day old). Arrows in bicuculline treated group indicate the synchronized calcium surge, while there is no synchronization in the same area before bicuculline treatment. Time is shown as min:sec. Scale bar, 100 ΞΌm.(H) Immunostaining for pre-synaptic protein vGAT and post-synaptic protein gephyrin in 47 day old hMGEOs section. Scale bar, 5 ΞΌm.(I) Diagram showing slice patch-clamp and identification of the neuronal morphology of the recorded cell by filling with biocytin. Scale bar, 25 ΞΌm.(J) Representative voltage traces of current-clamp recordings of a cell in hMGEO slice in response to current steps (-5 pA, +5 pA, and +25 pA from -60 mV, 1 s).(K) Graph depicting the firing frequency of the recorded cells from hMGEOs plotted against injected current (n=7 cells). Mean Β± SE are shown.(L) Representative image of APs of a cell in hMGEO slice before and during application of TTX (1 ΞΌM).See also Figure S5; Movie S1-S3.
Modeling Human Interneuron Migration using hfMCOs(A) Scheme illustrating the strategy of organoids fusion for modeling human interneuron migration.(B) Images showing hsyn-RFP labeled MGE progenitors (arrows) migrated towards hCO sideduring culture. dpf: days post fusion. Scale bar, 10 ΞΌm.(C) 3-D reconstruction of hfMCOs revealed the migration of NKX2-1-GFP+ progenitors in hCO side. Z-stack con-focal imaging was performed near the fusion border. Note that cells have already started to migrate out 3 dpf (arrows). Scale bar, 10 ΞΌm.(D and E) Immunostaining for GFP in hfMCOs section 21 dpf confirmed the migration of MGE progenitors. Arrows show migration directions. Scale bar, 40 ΞΌm.(F and G) Representative images showing typical forward movement of growth cone (F, arrows) and soma translocation observed for migrating NKX2-1-GFP+ progenitors (G, arrows) at 14 dpf. Yellow box: cytoplasm elongation proceeding nucleokinesis. White box: neurons that migrated out of the focal plane. Scale bar, 10 ΞΌm.(H) Representative images showing migration directions of NKX2-1-GFP+ progenitors in hfMCOs without (left) or with 50 ΞΌM blebbistatin treatment (right). Yellow arrows: migration directions. Yellow stars: neurons without migration detected. Scale bar, 10 ΞΌm.(I-K) Quantification of ratio of migrating neurons (I), migrating speed (J), and ratio of active growth cones (K). Mean Β± SD are plotted. **, P<0.01; ***, P<0.001.(L) Representative images of random movement of growth cone in the presence of 50 ΞΌM blebbistatin. Yellow arrows: movement directions. Scale bar, 5 ΞΌm.(M) Representative image showing hsyn-GCaMP6s-expressing interneuron migrated into RFP-labeled hCO in an intact hfMCO at 12 dpf (left), the spontaneous calcium surges (middle), and the quantification (right). Mean Β± SD are plotted (n=6, totally 85 cells). Scale bar, 20 ΞΌm.(N) Immunostaining for vGAT and GFP in section of hfMCO. Arrow indicates the migration direction. Scale bar, 20 ΞΌm.(O) Immunostaining for PSD95 and GFP in section of hfMCO. Arrow indicates the migration direction. Scale bar, 5 ΞΌm.See also Figure S6-S7; Movie S4-S6.
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| 80 | Figure 7 | Modeling Human Interneuron Migration using hfMCOs(A) Scheme illustrating the strategy of organoids⦠|
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| Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development. | Fair SR et al. | β | 2020 | β |
| Gastrointestinal tract modeling using organoids engineered with cellular and microbiota niches. | Min S et al. | β | 2020 | β |
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| The Implementation of the Three Rs in Regulatory Toxicity and Biosafety Assessment: The Indian Perspective. | Pant AB | β | 2020 | β |
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| Cerebral organoids exhibit mature neurons and astrocytes and recapitulate electrophysiological activity of the human brain. | Yakoub AM | β | 2019 | β |
| Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development. | Trujillo CA et al. | β | 2019 | β |
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| Large-Scale Generation and Characterization of Homogeneous Populations of Migratory Cortical Interneurons from Human Pluripotent Stem Cells. | Ni P et al. | β | 2019 | β |
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| Modeling Human Brain Circuitry Using Pluripotent Stem Cell Platforms. | Hartlaub AM et al. | β | 2019 | β |
| "Necessity Is the Mother of Invention" or Inexpensive, Reliable, and Reproducible Protocol for Generating Organoids. | Eremeev AV et al. | β | 2019 | β |
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| Pluripotent Stem Cell-Derived Cerebral Organoids Reveal Human Oligodendrogenesis with Dorsal and Ventral Origins. | Kim H et al. | β | 2019 | β |
| Precisely controlling endogenous protein dosage in hPSCs and derivatives to model FOXG1 syndrome. | Zhu W et al. | β | 2019 | β |
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| Species-Specific miRNAs in Human Brain Development and Disease. | Prodromidou K et al. | β | 2019 | β |
| Specification of positional identity in forebrain organoids. | Cederquist GY et al. | β | 2019 | β |
| Spinal cord organoids add an extra dimension to traditional motor neuron cultures. | Winanto et al. | β | 2019 | β |
| Sporadic Creutzfeldt-Jakob disease prion infection of human cerebral organoids. | Groveman BR et al. | β | 2019 | β |
| The Dynamic Partnership of Polycomb and Trithorax in Brain Development and Diseases. | Kuehner JN et al. | β | 2019 | β |
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| Transplantation of Human Brain Organoids: Revisiting the Science and Ethics of Brain Chimeras. | Chen HI et al. | β | 2019 | β |
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| Genetics of Alcohol Use Disorder: A Role for Induced Pluripotent Stem Cells? | Prytkova I et al. | β | 2018 | β |
| Human Huntington's Disease iPSC-Derived Cortical Neurons Display Altered Transcriptomics, Morphology, and Maturation. | Mehta SR et al. | β | 2018 | β |
| Induction of myelinating oligodendrocytes in human cortical spheroids. | Madhavan M et al. | β | 2018 | β |
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| Organoids required! A new path to understanding human brain development and disease. | Arlotta P | β | 2018 | β |
| Review: Synthetic scaffolds to control the biochemical, mechanical, and geometrical environment of stem cell-derived brain organoids. | Oksdath M et al. | β | 2018 | β |
| Rotenone exerts developmental neurotoxicity in a human brain spheroid model. | Pamies D et al. | β | 2018 | β |
| Single-cell trajectory analysis of human homogenous neurons carrying a rare RELN variant. | Arioka Y et al. | β | 2018 | β |
| Spontaneous Glioblastoma Spheroid Infiltration of Early-Stage Cerebral Organoids Models Brain Tumor Invasion. | da Silva B et al. | β | 2018 | β |
| Studying the Brain in a Dish: 3D Cell Culture Models of Human Brain Development and Disease. | Brown J et al. | β | 2018 | β |
| The rise of three-dimensional human brain cultures. | PaΘca SP | β | 2018 | β |
| Translational potential of human brain organoids. | Sun AX et al. | β | 2018 | β |
| Systematic Three-Dimensional Coculture Rapidly Recapitulates Interactions between Human Neurons and Astrocytes. | Krencik R et al. | β | 2017 | β |