The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
paper
Cited
Public
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- Authors
- McKenna, Aaron; Hanna, Matthew; Banks, Eric; Sivachenko, Andrey; Cibulskis, Kristian; Kernytsky, Andrew; Garimella, Kiran; Altshuler, David; Gabriel, Stacey; Daly, Mark; DePristo, Mark A
- Year
- 2010
- Journal
- Genome research
- PMID
- 20644199
- DOI
- 10.1101/gr.107524.110
- PMCID
- PMC2928508
Next-generation DNA sequencing (NGS) projects, such as the 1000 Genomes Project, are already revolutionizing our understanding of genetic variation among individuals. However, the massive data sets generated by NGS--the 1000 Genome pilot alone includes nearly five terabases--make writing feature-rich, efficient, and robust analysis tools difficult for even computationally sophisticated individuals. Indeed, many professionals are limited in the scope and the ease with which they can answer scientific questions by the complexity of accessing and manipulating the data produced by these machines. Here, we discuss our Genome Analysis Toolkit (GATK), a structured programming framework designed to ease the development of efficient and robust analysis tools for next-generation DNA sequencers using the functional programming philosophy of MapReduce. The GATK provides a small but rich set of data access patterns that encompass the majority of analysis tool needs. Separating specific analysis calculations from common data management infrastructure enables us to optimize the GATK framework for correctness, stability, and CPU and memory efficiency and to enable distributed and shared memory parallelization. We highlight the capabilities of the GATK by describing the implementation and application of robust, scale-tolerant tools like coverage calculators and single nucleotide polymorphism (SNP) calling. We conclude that the GATK programming framework enables developers and analysts to quickly and easily write efficient and robust NGS tools, many of which have already been incorporated into large-scale sequencing projects like the 1000 Genomes Project and The Cancer Genome Atlas.
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| Malaria-GENOMAP: a web-based tool for exploring genomic variation of malaria parasites. | Thorpe J et al. | β | 2026 | β |
| Massive Genomic and Transcriptomic Changes Within a Young Inversion Polymorphism in the Absence of Degeneration. | Baran NM et al. | β | 2026 | β |
| Massive proliferation of retrotransposons contributes to genome size expansion in species of the Pseudocercospora genus. | GonzΓ‘lez SΓ‘yer SM et al. | β | 2026 | β |
| MdARF16/17 link auxin signaling to Ma1-independent control of vacuolar malate transport in apple. | Wang CK et al. | β | 2026 | β |
| Mechanistic insights into coordinated var transcriptional switching in malaria parasites. | Visone JE et al. | β | 2026 | β |
| MicroRNA-Induced Gene Silencing (MIGS): A Tool for Multi-Gene Silencing and Targeting Viruses in Plants. | Gauthier MA et al. | β | 2026 | β |
| Minor QTLs and the temperature during the grain filling stage contributed to the considerable variation in rice eating and cooking quality. | Huang W et al. | β | 2026 | β |
| Mitochondrial heteroplasmy is a risk factor for the development of chronic lymphocytic leukemia. | Pasca S et al. | β | 2026 | β |
| Mitogenomes reveal the timing and distribution of divergence events among trans-Beringian birds. | Collier KA et al. | β | 2026 | β |
| Multigene germline testing for epithelial ovarian cancer in China. | Li L et al. | β | 2026 | β |
| Multi-omics reveals co-regulation of hepatic bile acid metabolism in laying hens by host genetics and the cecal Anaerostipes. | Yang W et al. | β | 2026 | β |
| Multi-omics reveals key molecular and cellular features of advanced small cell lung cancers associated with distinct therapeutic opportunities. | Nones K et al. | β | 2026 | β |
| Multiple chromosomal inversions modulate continuous local adaptation along a steep thermal cline. | Akopyan M et al. | β | 2026 | β |
| Negative Selection Maintains Grossly Altered but Broadly Stable Karyotypes in Metastatic Colorectal Cancer. | Cross WCH et al. | β | 2026 | β |
| Neoadjuvant palbociclib and endocrine therapy versus chemotherapy in ERβ+β/HER2- breast cancer: a randomized phase II trial. | Matikas A et al. | β | 2026 | β |
| Neoantigen Targeting as a Novel Approach for Therapy-Resistant Tumors. | Okada M et al. | β | 2026 | β |
| Neurostructural alterations, trait impulsivity, and genetic architecture in individuals with methamphetamine dependence: a multimodal imaging-genetics study. | Luo D et al. | β | 2026 | β |
| New Insights Into the Evolution of Immune Adaptors in Murid Rodents. | Su Q et al. | β | 2026 | β |
| No association between genetic ancestry and exome sequencing-based diagnosis of inborn errors of metabolism. | Najera J et al. | β | 2026 | β |
| Nous-209 neoantigen vaccine for cancer prevention in Lynch syndrome carriers: a phase 1b/2 trial. | D'Alise AM et al. | β | 2026 | β |
| Novel driver gene MDC1 confers homologous recombination repair deficiency and genomic instability in chemoresistant relapsing ovarian cancer. | Diaz M et al. | β | 2026 | β |
| Pan-3D Genome Analysis Reveals the Roles of Structural Variation in Chicken Chromatin Architectures, Domestication and Production Traits. | Zhou Z et al. | β | 2026 | β |
| Parasex generates highly recombinant progeny in Candida albicans with increased virulence. | Fillinger RJ et al. | β | 2026 | β |
| Paternal genomic history and Y-chromosome phylogeny from the Chengdu Plain reveal multiple Indigenous East Asian farmer contributions to ancient Shu and their descendants. | Luo L et al. | β | 2026 | β |
| Pathogenic OTUD3 Mutations Predispose to Ulcerative Colitis Due to Barrier Dysfunction. | Giri R et al. | β | 2026 | β |
| Pathogenic Variants in RNU2-2, a Non-coding Spliceosomal RNA, Cause a Distinctive Developmental and Epileptic Encephalopathy. | Chiu ATG et al. | β | 2026 | β |
| Patterns of Interploidy Admixture in Polyploid Complexes: Insights From Thymus Sect. Mastichina (Lamiaceae). | GarcΓa-CΓ‘rdenas FJ et al. | β | 2026 | β |
| PHR-Mediated Pi Starvation Response Mobile Messenger RNAs Represent Noncoding Transcripts in Recipient Tissues. | Dong W et al. | β | 2026 | β |
| Phylogenetic, ecological and sensory characterization of Coffea dactylifera, a wild coffee from the Democratic Republic of Congo. | Tas AS et al. | β | 2026 | β |
| Placental insufficiency markers to assess the risk of non-chromosomal genetic conditions in early-onset fetal growth restriction. | Armengol-Alsina M et al. | β | 2026 | β |
| PLETHORAs shape Arabidopsis phyllotaxis through modulation of patterning robustness and accelerated inflorescence development. | Kerstens M et al. | β | 2026 | β |
| PMEL governs autosomal dominant inheritance of white-tail independent of yellow body plumage in chickens (Gallus gallus domesticus). | Huang X et al. | β | 2026 | β |
| Polygenic risk scores for Crohn's disease risk prediction in a Chinese population: insights from multi-ethnic genome-wide association studies. | Guan L et al. | β | 2026 | β |
| Population genomic analysis of Weining chicken via dd-RAD sequencing: Unraveling diversity, structure, and selective sweeps. | Ai Z et al. | β | 2026 | β |
| Population structure of wild and cultivated grapevines in Armenia. | Nikoghosyan M et al. | β | 2026 | β |
| Primary pulmonary angiosarcoma: A case study with genetic insights and potential therapeutic targets. | Zhu Y et al. | β | 2026 | β |
| Protocol for the identification of selected genes and haplotype analysis in soybean using next-generation sequencing. | Zhu Z et al. | β | 2026 | β |
| Rapid Genomic Adaptation of Drosophila Melanogaster to Wolbachia Elimination. | Dou WH et al. | β | 2026 | β |
| Rapid structural transformation of ionizable lipid nanoparticles involving Omega-3 polyunsaturated fatty acids enhances antioxidant defense and mitochondrial proteins activity in pH-responsive drug delivery. | Akanchise T et al. | β | 2026 | β |
| Regional nonsense constraint offers biological and clinical insights into genetic disease. | Blakes AJM et al. | β | 2026 | β |
| Replication stress increases de novo CNVs across the malaria parasite genome. | Brown N et al. | β | 2026 | β |
| Reply to: a quantitative trait locus for reduced microglial APOE expression associates with reduced cerebral amyloid angiopathy. | Shade LMP et al. | β | 2026 | β |
| Repurposing public sarcoma multi-omics for neoantigen discovery. | Mantas P et al. | β | 2026 | β |
| Revealing tumor microenvironmental heterogeneity and prognostic value in angioimmunoblastic T-cell lymphoma via spatial transcriptome sequencing. | Zhang X et al. | β | 2026 | β |
| RFC1 Repeat Expansion in Chronic Cough: Findings From the Korean Chronic Cough Registry. | Park KE et al. | β | 2026 | β |
| RP9 revisited; RP9 p.(H137L) remains a likely cause of dominant splicing factor-Retinitis Pigmentosa. | Chang L et al. | β | 2026 | β |
| Safety and efficacy of intratumoural anti-CTLA4 with intravenous anti-PD1. | Tselikas L et al. | β | 2026 | β |
| Salt-stress-induced tomato sweetening involves an SlSnRK2.6-SlZHD8 sugar accumulation cascade triggered by root-derived abscisic acid. | Xu J et al. | β | 2026 | β |
| SARS-CoV-2 wastewater genomic surveillance: approaches, challenges, and opportunities. | Munteanu V et al. | β | 2026 | β |
| Schizophrenia risk variants modulate transcription factor binding and gene expression in cortical cell types. | Gerstner N et al. | β | 2026 | β |
| scSNViz: visualization and analysis of cell-specific expressed SNVs. | Martinez S et al. | β | 2026 | β |
| Seascape genomics uncovers contrasting population genetic structures in reef corals. | Oury N et al. | β | 2026 | β |
| Sequence Variations in MYB (v-myb Myeloblastosis Viral Oncogene Homolog) Genes Impair Anthocyanin Biosynthesis and Contribute to Yellow Flower Phenotype in <i>Rehmannia glutinosa</i>. | Tang J et al. | β | 2026 | β |
| Sequencing Ultraconserved Elements (UCEs) for Marine Population Genomics: A Proof-of-Concept Using a Deep-Sea Mussel Species. | Li YX et al. | β | 2026 | β |
| Shared historical refugia and genetic diversity hotspots of co-distributed species on the Qinghai Tibet plateau. | Lv H et al. | β | 2026 | β |
| Short tandem repeat expansions in patients with neurodegenerative dementia. | Zhu Y et al. | β | 2026 | β |
| Signatures of Radiation-Induced Stress and Putative Selection on Immune Targets in Chornobyl Wolves. | Love CN et al. | β | 2026 | β |
| Single-cell epigenetic landscape, microenvironment interactions, and gene regulatory modules of non-functioning pituitary adenomas. | Zhang Z et al. | β | 2026 | β |
| Single nucleotide polymorphism information estimates breed and variety composition ratio in food. | Tan CE et al. | β | 2026 | β |
| Somatic mutations distinguish melanocyte subpopulations in human skin. | Tandukar B et al. | β | 2026 | β |
| Spatial multi-omics unveils the monoclonal origin, neuroendocrine plasticity, and microenvironment niches in combined small-cell lung cancer. | Wang Z et al. | β | 2026 | β |
| Spatio-temporal dynamics of Hendra virus in Australia reveal stable maintenance of diverse viral clades among Pteropus bats. | Yinda CK et al. | β | 2026 | β |
| SPrUCE: Utilizing Ultraconserved Elements of DNA for Population-Level Genetic Diversity Estimation. | Melendez D et al. | β | 2026 | β |
| Stepwise recombination suppression around the mating-type locus associated with a diploid-like life cycle in Schizothecium fungi. | De Filippo E et al. | β | 2026 | β |
| Structural and functional brain asymmetry in relation to heterogeneous causes of situs inversus totalis. | Wang MY et al. | β | 2026 | β |
| Structural and Genomic Bases of Branching Traits in Spur-Type Apple: Insights from Morphology and Whole-Genome Resequencing. | Wang H et al. | β | 2026 | β |
| Structural Variation and 3D Genome-Driven DNA/RNA Methylation Divergence Contributing to Cotton Fiber Domestication. | Shao L et al. | β | 2026 | β |
| Sub-pangenome analysis reveals structural variants associated with fruit color and bacterial wilt resistance in eggplant. | You Q et al. | β | 2026 | β |
| TaAGL6-B1 identified as a candidate gene for the dominant awn-inhibitor locus B2 in wheat. | Mizuno N et al. | β | 2026 | β |
| Targeting cancer stem cells predicts response and reverses chemoresistance in ascites-derived ovarian cancer organoids. | Zhang X et al. | β | 2026 | β |
| Targeting thymine DNA glycosylase induces synthetic lethality in p53-deficient cancers. | Zhou JX et al. | β | 2026 | β |
| Telomere-to-telomere genome assemblies and population resequencing of diploid and allotetraploid peanut varieties. | Bian J et al. | β | 2026 | β |
| Telomere-to-telomere genome assembly of a male pig provides insight into population structure and selection for body stature. | Luo YB et al. | β | 2026 | β |
| Tet2 deficiency alters CD4+ T cell function and promotes T cell lymphoma with a TFH cell immunophenotype. | Heavican-Foral TB et al. | β | 2026 | β |
| The 1000 Chinese Pangenome empowers medical and population genetics. | Wang Y et al. | β | 2026 | β |
| The annotated blueprint: integrated functional genomic resources for a model tetraploid wheat Triticum turgidum cv Kronos. | Seong K et al. | β | 2026 | β |
| The Arabidopsis J-protein DJA4 protects chloroplasts from arsenic toxicity by binding arsenite. | Wang P et al. | β | 2026 | β |
| The architecture of resilience: a genome assembly of Myrothamnus flabellifolia sheds light on desiccation tolerance and sex determination. | Marks RA et al. | β | 2026 | β |
| The ChickenGTEx portal: a pan-tissue catalogue of regulatory variants shaping transcriptomic and phenotypic diversity. | Hou Y et al. | β | 2026 | β |
| The chromosome-level genome of Chinese indicine cattle breed provides insights into bovine adaptation and immunity. | Ge F et al. | β | 2026 | β |
| The consensus molecular subtypes of esophageal squamous cell carcinoma. | Cui H et al. | β | 2026 | β |
| The development and validation of a genotyping-by-target sequencing chip for fungal population genetic analysis. | Yan H et al. | β | 2026 | β |
| The Diversity of the DNA-Binding Landscape in the DREB/ERF Family: Focusing on Reproductive Processes in Fruit Trees With Highly Heterozygous Genome. | Wu F et al. | β | 2026 | β |
| The Genetic and Morphological Basis of Local Adaptation to Elevational Extremes in an Alpine Finch. | Robertson ECN et al. | β | 2026 | β |
| The genetic basis of mimicry in the snowy bumble bee (Bombus niveatus) in Anatolia with insights from a color polymorphic gynandromorph. | Dabak T et al. | β | 2026 | β |
| The Neijiang pig T2T genome reveals domestication history and germplasm traits of Southwest Chinese local breeds. | Chen D et al. | β | 2026 | β |
| The relationship between genomic variation and genetic load: insights from small island populations. | Gabrielli M et al. | β | 2026 | β |
| The telomere-to-telomere haplotype genome provides in-depth insights into the molecular mechanisms of the anthocyanin deficiency phenotype in Prunus mume. | Zhou P et al. | β | 2026 | β |
| The tiny germline chromosomes of Paramecium aurelia have an exceptionally high recombination rate and are capped by a new class of Helitrons. | Arnaiz O et al. | β | 2026 | β |
| The Tumor-to-Endothelial Transfer of FTO Promotes Vascular Remodeling and Metastasis in Nasopharyngeal Carcinoma. | Wu C et al. | β | 2026 | β |
| Tomato antiviral ubiquitin-proteasome system recognizes viral 59βkDa protein to confer tomato chlorosis virusΒ resistance. | Zhao D et al. | β | 2026 | β |
| TONSL suppresses polymerase theta-dependent tandem duplications through chromatin-guided repair. | van Schendel R et al. | β | 2026 | β |
| Tracing 2500 years of human betaherpesvirus 6A and 6B diversity through ancient DNA. | Guellil M et al. | β | 2026 | β |
| Tracing modern breeding introgressions in European potato. | Dent CI et al. | β | 2026 | β |
| Transcriptomic landscape of transposable elements reveals <i>LTR7</i>-<i>PLAAT4</i> as a potential oncogene and therapeutic target in pancreatic adenocarcinoma. | Shi M et al. | β | 2026 | β |
| Transposable Element-Mediated Structural Variation Drives Flower Colour Diversification in Camellia. | Fan M et al. | β | 2026 | β |
| TSniffer: unbiased de novo identification of RNA editing sites and quantification of editing activity in RNA-seq data. | Herrmann M et al. | β | 2026 | β |
| Tumor ecosystem and microbiome features associated with efficacy and resistance to avelumab plus chemoradiotherapy in head and neck cancer. | Riaz N et al. | β | 2026 | β |
| Tumor-infiltrating bacteria disrupt cancer epithelial cell interactions and induce cell-cycle arrest. | Galeano NiΓ±o JL et al. | β | 2026 | β |
| Two bHLH Transcription Factor Genes <i>AhWSC1a</i> and <i>AhWSC1b</i> Act as Gatekeepers of Testa Pigmentation, Preventing White Seed Coats in Peanuts. | Chen G et al. | β | 2026 | β |
| Tyrosine kinase targeting uncovers oncogenic pathway plasticity in Tasmanian devil transmissible cancers. | SchΓΆnbichler A et al. | β | 2026 | β |
| Tyrp1 mutation drives color variation via melanin reduction and collagen deposition in Chinese soft-shelled turtles (Pelodiscus sinensis). | Zhong J et al. | β | 2026 | β |
| Ultrasensitive ctDNA monitoring reveals early predictors of immunotherapy response in advanced cancer. | Nishizaki D et al. | β | 2026 | β |
| Uncovering adaptation with a new Arabidopsis thaliana multiparent intercross population. | Neto C et al. | β | 2026 | β |
| Variant calling in genomics: A comparative performance analysis and decision guide. | Pinto V et al. | β | 2026 | β |
| Variants in MTNAP1 underlie a neurodegenerative disorder by impairing mitochondrial stability. | Kumar A et al. | β | 2026 | β |
| A 14-3-3 modulator of seed weight and quality for unlocking the yield potential of soybean. | Li B et al. | β | 2025 | β |
| Abundant A-to-I RNA editing in spermatocytes may suppress transposons to compensate for piRNA downregulation in male germlines. | Duan Y et al. | β | 2025 | β |
| Abundant genetic variation is retained in many laboratory schistosome populations. | Jutzeler KS et al. | β | 2025 | β |
| Accurate detections of the heterozygous SNPs with rice genomic data and prediction of de novo spontaneous mutation rate. | Balimponya EG et al. | β | 2025 | β |
| A century of anthropogenic perturbations impact genomic signatures of the iconic migratory Atlantic cod. | Helmerson C et al. | β | 2025 | β |
| Acetyl-CoA synthetase mutations affect the susceptibility of <i>Plasmodium falciparum</i> to antimalarial drugs. | Zhao W et al. | β | 2025 | β |
| A chromosome-level genome assembly of the Chinese herring (Ilisha elongata) uncovered its population dynamics and genes related to lipid metabolism. | Wu T et al. | β | 2025 | β |
| A combined genomic arrhythmia propensity score delineates cumulative risk. | Monroe TO et al. | β | 2025 | β |
| A comparison of short- and long-read whole-genome sequencing for microbial pathogen epidemiology. | Schiffer AM et al. | β | 2025 | β |
| A comprehensive genome-wide analysis for signatures of selection in goat (genus Capra) revealed new candidate genes for environmental adaptation and productive traits. | Pallotti S et al. | β | 2025 | β |
| A curated dataset of great ape genome diversity. | Han S et al. | β | 2025 | β |
| Adaptive Evolution and Transcriptomic Specialization of P450 Detoxification Genes in the Colorado Potato Beetle Across Developmental Stages and Tissues. | Zhou H et al. | β | 2025 | β |
| Adaptive Evolution for Freshwater Adaptation in Coilia nasus by Directional Selection on Osmoregulation Genes. | Han S et al. | β | 2025 | β |
| Adaptive Potential of <i>Syzygium maire</i>, a Critically Threatened Habitat Specialist Tree Species in Aotearoa New Zealand. | Balkwill CG et al. | β | 2025 | β |
| Adaptive tracking with antagonistic pleiotropy results in seemingly neutral molecular evolution. | Song S et al. | β | 2025 | β |
| A Deep Autoencoder Compression-Based Genomic Prediction Method for Whole-Genome Sequencing Data. | Song H et al. | β | 2025 | β |
| Adjuvant nivolumab in muscle-invasive urothelial carcinoma: exploratory biomarker analysis of the randomized phase 3 CheckMate 274 trial. | Galsky MD et al. | β | 2025 | β |
| Admixture Mapping Reveals Evidence for Multiple Mitonuclear Incompatibilities in Swordtail Fish Hybrids. | Robles NV et al. | β | 2025 | β |
| A feasibility study of whole genome germline testing as an adjunct screening tool in a UK general private practice. | Jones AB et al. | β | 2025 | β |
| A framework for identifying and prioritizing SNPs in genes of the hypothalamic- pituitary-gonadal axis in Guzerat cattle using amplicon-based NGS. | Marcuzzi O et al. | β | 2025 | β |
| A FSHR missense variant associated with polycystic ovary syndrome in an Iranian family with multiple affected sisters. | Behrafigh M et al. | β | 2025 | β |
| A genetic screen reveals a key role for Reg1 in 2-deoxyglucose sensing and yeast AMPK inhibition. | Ballin A et al. | β | 2025 | β |
| A genomic test of sex-biased dispersal in white sharks. | Laso-Jadart R et al. | β | 2025 | β |
| AgileMultiIdeogram: Rapid Identification and Visualization of Autozygous Regions Using Illumina Short-Read Sequencing Data. | Watson CM et al. | β | 2025 | β |
| A haplotype-resolved chromatin landscape connects cis-regulatory variants to trait variation in Citrus. | Diaz IA et al. | β | 2025 | β |
| A haplotype-resolved reference genome for Eucalyptus grandis. | LΓΆtter A et al. | β | 2025 | β |
| A head-to-head NLR gene pair from wild emmer confers stripe rust resistance in wheat. | Hu Y et al. | β | 2025 | β |
| A high-quality chromosome-level genome assembly and annotation of Anqing Six-end-white pig (Sus scrofa). | Zhang W et al. | β | 2025 | β |
| A human YEATS4 variant confers resistance to TST and IGRA conversion despite Mycobacterium tuberculosis exposure. | Conil C et al. | β | 2025 | β |
| A library of avian proteins improves palaeoproteomic taxonomic identification and reveals widespread intraspecies variability. | Codlin MC et al. | β | 2025 | β |
| ALOXE3 missense variant in a Chihuahua with autosomal recessive ichthyosis. | Vinberg C et al. | β | 2025 | β |
| AlphaFold3-guided optimization of a photoactivatable endonuclease for top-down genome engineering. | Yone H et al. | β | 2025 | β |
| A multi-disciplinary approach to identify spillover interfaces of bat coronaviruses to pig farms in Italy. | Festa F et al. | β | 2025 | β |
| A multi-omics analysis of pancreatitis: bridging familial genetics and disease progression. | Li F et al. | β | 2025 | β |
| A multi-parent population approach to reveal the genetic basis of plant height in maize. | Dai T et al. | β | 2025 | β |
| A mutation in CmoBADH results in the production of 2-acetyl-1-pyrroline, conferring a 'taro-like' aroma in Cucurbita moschata. | Zhao G et al. | β | 2025 | β |
| An alpine plant shows no decrease in genetic diversity associated with rapid post-glacial range expansion. | Urquhart-Cronish M et al. | β | 2025 | β |
| Analysis of a near telomere-to-telomere genome of Phellodendron amurense reveals insights into berberine biosynthesis. | Chen S et al. | β | 2025 | β |
| Analysis of genomic selection characteristics of local cattle breeds in Gansu. | Cai B et al. | β | 2025 | β |
| Analysis of the genetic structure and selection signatures of Xiangyang black pigs using whole-genome resequencing data. | Xu Z et al. | β | 2025 | β |
| Analysis of the prevalence, spread, and mutation patterns of SARS-CoV-2 variants: data from COVID-19 testing expansion strategy study in salvador, Northeast Brazil. | Dantas ACS et al. | β | 2025 | β |
| Analysis wheat wild relatives Thinopyrum intermedium and Roegneria kamoji genomes reveal different polyploid evolution paths. | Sun S et al. | β | 2025 | β |
| Ancient Introgression Explains Mitochondrial Genome Capture and Mitonuclear Discordance Among South American Collared Tropidurus Lizards. | Salles MMA et al. | β | 2025 | β |
| Ancient microbial DNA and proteins preserve in concretions covering human remains. | Bonucci B et al. | β | 2025 | β |
| Ancient pangenomic origins of noncanonical NLR genes underlying the recent evolutionary rescue of a staple crop. | VanGessel CJ et al. | β | 2025 | β |
| An elite allele TaDT1-A<sup>hapI</sup> enhances drought tolerance via mediating autophagic pathways in wheat. | Liu X et al. | β | 2025 | β |
| A New Family-Based Approach for Detecting Allele-Specific Expression and for Mapping Possible eQTLs. | Alnajjar M et al. | β | 2025 | β |
| A New Hexaploid Species of <i>Isoetes</i> (Isoetaceae) From Fujian, China, Based on Morphological and Molecular Evidence. | Wang M et al. | β | 2025 | β |
| A new yeast strain for valorisation of vinasse, a rum distillery waste product. | Simonaviciene B et al. | β | 2025 | β |
| An Intergeneric Hybrid Between Historically Isolated Temperate and Tropical Jays Following Recent Range Expansion. | Stokes BR et al. | β | 2025 | β |
| A non-coding role for trypanosome VSG transcripts in allelic exclusion. | Escrivani DO et al. | β | 2025 | β |
| A nonsense mutation in the PRKG2 gene in dalmatian dogs with chondrodysplasia. | MΓ€kelΓ€inen S et al. | β | 2025 | β |
| A novel VPS13A mutation in an Iranian family with Chorea-Acanthocytosis. | Salmanian M et al. | β | 2025 | β |
| Antagonistic regulation of LINE-1/Alu elements and their repressor APOBEC3B in cellular senescence. | Munot D et al. | β | 2025 | β |
| Anthocyanin accumulation in the red-fleshed grape germplasm ZhongShan-HongYu through bulked segregant analysis and RNA-seq. | Sun C et al. | β | 2025 | β |
| A pancreatic cancer organoid biobank links multi-omics signatures to therapeutic response and clinical evaluation of statin combination therapy. | Li Y et al. | β | 2025 | β |
| A partially automated method for DNA extraction from marmoset hair follicles to avoid blood chimerism. | Stendahl AM et al. | β | 2025 | β |
| A patient-derived organoid model captures fetal-like plasticity in colorectal cancer. | Xiong L et al. | β | 2025 | β |
| APC-related multiple salivary gland lesions: spatial transcriptomic analysis reveals progressive WNT activation. | Chan-Pak-Choon F et al. | β | 2025 | β |
| APOBEC1-Dependent RNA Eiting of TNF Signaling Orchestrates Ileal Villus Morphogenesis in Pigs: Integrative Transcriptomic and Editomic Insights. | Li W et al. | β | 2025 | β |
| APOBEC3A drives deaminase mutagenesis in human gastric epithelium. | An Y et al. | β | 2025 | β |
| A practical framework for predicting splicing single nucleotide variants in exome sequencing. | Utsuno Y et al. | β | 2025 | β |
| A Reassessment of the Genomic Ancestry of the World's Largest Captive Baboon Colony. | Mercuri G et al. | β | 2025 | β |
| A semi-dominant NLR allele regulates growth and disease resistance in wheat. | Tian S et al. | β | 2025 | β |
| ASET: an end-to-end pipeline for quantification and visualization of allele specific expression. | Wu W et al. | β | 2025 | β |
| A significant genomic region underlying growth traits in adult Beijing You chicken identified by genome-wide association analysis. | Jiang X et al. | β | 2025 | β |
| A single-cell rice atlas integrates multi-species data to reveal cis-regulatory evolution. | Yan H et al. | β | 2025 | β |
| A single mutation may contribute to accelerated evolution of SARS-CoV-2 toward Omicron. | Lin X et al. | β | 2025 | β |
| A specialized reference panel with structural variants integration for improving genotype imputation in Alzheimer disease and related dementias. | Cheng PL et al. | β | 2025 | β |
| Aspergillus fumigatus dsRNA virus promotes fungal fitness and pathogenicity in the mammalian host. | Rocha MC et al. | β | 2025 | β |
| Assessing genetic diversity and performing genome-wide association studies (GWAS) using multiple marker types across desi, kabuli, and wild accessions in chickpea (Cicer arietinum L.). | Ruperao P et al. | β | 2025 | β |
| Assessment of peripheral blood DNA methylation signatures as pharmacodynamic and predictive biomarkers during azacitidine therapy in juvenile myelomonocytic leukaemia: Results of the EWOG-MESRAT study. | SchΓΆnung M et al. | β | 2025 | β |
| A stochastic RNA editing process targets a select number of sites in individual <i>Drosophila</i> glutamatergic motoneurons. | Crane AB et al. | β | 2025 | β |
| A Study on the Cell Layer Patterns of a Citrus Periclinal Chimera Reveals Ξ²-Cryptoxanthin Regulation in Citrus Fruits. | Zhang C et al. | β | 2025 | β |
| A Transformers-based framework for refinement of genetic variants. | Abdelwahab O et al. | β | 2025 | β |
| A transposon insertion in <i>CmKNAT2-like2</i> disrupts mottled rind formation in melon (<i>Cucumis melo</i> L.). | Li S et al. | β | 2025 | β |
| Augmenting precision medicine via targeted RNA-Seq detection of expressed mutations. | Li D et al. | β | 2025 | β |
| AutoMethyc: an automated methylation analysis for massively parallel sequencing data. | Ambriz-Barrera F et al. | β | 2025 | β |
| Baboons at a Crossroads: Hybridisation Events and Genomic Links of Central Mozambique's Baboons With Papio Neighbors. | Caldon M et al. | β | 2025 | β |
| Balancing selection of climate adaptive loci underlies the success of introduction of Eurasian Tree Sparrows. | Chen Y et al. | β | 2025 | β |
| BCL-2 Family Inhibition Enhances mTORC1/2 Inhibition in PIK3CA-Mutant Colorectal Cancer. | DeStefanis RA et al. | β | 2025 | β |
| Benchmarking Imputed Low Coverage Genomes in a Human Population Genetics Context. | Purnomo GA et al. | β | 2025 | β |
| Benchmarking of low coverage sequencing workflows for precision genotyping in eggplant. | Baraja-Fonseca V et al. | β | 2025 | β |
| Benchmarking scRNA-seq copy number variation callers. | Schmid KT et al. | β | 2025 | β |
| Beyond clinical data: the role of sewage monitoring in tracking pandemic trends of SARS-CoV-2. | Sun Z et al. | β | 2025 | β |
| Biallelic Mutations in the Otogelin-Like Gene (OTOGL) Associated With Congenital Non-Syndromic Sensorineural Hearing Loss in a Chinese Family. | Dai X et al. | β | 2025 | β |
| Bi-allelic variants in the ribosomal protein RPS6KC1 cause a complex neurodevelopmental disorder. | Planas-Serra L et al. | β | 2025 | β |
| Biochemical and Genomic Underpinnings of Carotenoid Colour Variation Across a Hybrid Zone Between South Asian Flameback Woodpeckers. | Ranasinghe RW et al. | β | 2025 | β |
| Biparental Inheritance and Instability of kDNA in Experimental Hybrids of <i>Trypanosoma cruzi</i>: A Proposal for a Mechanism. | Tomasini N et al. | β | 2025 | β |
| Bivariate GWAS performed on rabbits divergently selected for intramuscular fat content reveals pleiotropic genomic regions and genes related to meat and carcass quality traits. | Sosa-Madrid BS et al. | β | 2025 | β |
| bloodAGENT: a versatile tool for blood group typing and genomic variation analysis. | Wittig M et al. | β | 2025 | β |
| Boost or Bust? The Impact of Supplementation on Functional Genetic Diversity and Selective Processes in Tasmanian Devils. | Schraven AL et al. | β | 2025 | β |
| BrSQE1 and the ethylene signaling pathway suppress cell division to regulate plant size in Chinese cabbage (<i>Brassica rapa</i> subsp. <i>pekinensis</i>). | Yang R et al. | β | 2025 | β |
| BS-D275: A novel locus on the chromosome arm 2DS governing branched spike development in wheat. | Qu Y et al. | β | 2025 | β |
| Bulk Segregant Analysis Reveals Genomic Regions Associated With Imidacloprid Resistance in the Colorado Potato Beetle. | Edison A et al. | β | 2025 | β |
| Bull urine and semen as potential vectors of disease transmission for Leptospira borgpetersenii serovar Hardjo. | Hamond C et al. | β | 2025 | β |
| Camrelizumab, an Anti-PD-1 Monoclonal Antibody, Plus Carboplatin and Nab-Paclitaxel as First-Line Setting for Extensive-Stage Small-Cell Lung Cancer: A Phase 2 Trial and Biomarker Analysis. | Yu J et al. | β | 2025 | β |
| CaMutQC: An R package for integrative quality control and filtration of cancer somatic mutations. | Wang X et al. | β | 2025 | β |
| Cancer immunology data engine reveals secreted AOAH as a potential immunotherapy. | Gong L et al. | β | 2025 | β |
| Candidate genes for kernel ratio in maize identified via combined GWAS and QTL mapping across multiple environments. | Ye F et al. | β | 2025 | β |
| Carrying APOL1 G1 allele is associated with cardiovascular complications during COVID-19 in an admixed population. | Cadore NA et al. | β | 2025 | β |
| Cell-free DNA as a potential alternative to genomic DNA in genetic studies. | Zeng J et al. | β | 2025 | β |
| Cell-free DNA-based inference of the activities of 370β+βtranscription factors mirrors their activities in tumors. | Tamaki R et al. | β | 2025 | β |
| CEP76 impairment at the centrosome-cilium interface contributes to a spectrum of ciliopathies. | Khan K et al. | β | 2025 | β |
| Certain vs. uncertain actionable secondary findings in a cohort of 500 Lebanese participants: What to report to the patient? | Hanna EM et al. | β | 2025 | β |
| Characterisation of <i>in vitro</i> resistance selection against second-/last-line antibiotics in methicillin-resistant <i>Staphylococcus aureus</i> ATCC 43300 strain. | Prasetyoputri A et al. | β | 2025 | β |
| Characterization of clinical risk factors for enhanced molecular residual disease monitoring in resected early-stage non-small cell lung cancer. | Shi Y et al. | β | 2025 | β |
| Characterization of the genomic landscape of canine oral osteosarcoma reveals similarities with appendicular osteosarcoma. | Husted C et al. | β | 2025 | β |
| Characterization of Ultra-Short plasma Cell-Free DNA in maternal blood and its preliminary potential as a screening marker for preeclampsia. | Liu W et al. | β | 2025 | β |
| Characterizing the performance of an antibiotic resistance prediction tool, gnomonicus, using a diverse test set of 2,663 <i>Mycobacterium tuberculosis</i> samples. | Westhead J et al. | β | 2025 | β |
| Chromosomal deletions in banana somaclonal variants reveal negative regulators of immunity underlying <i>Fusarium</i> wilt resistance. | Singh PT et al. | β | 2025 | β |
| Chromosome-Level Assembly and Annotation of the Grey Reef Shark (Carcharhinus amblyrhynchos) Genome. | Dahms C et al. | β | 2025 | β |
| Chromosome-level comparative genomics and host-specific fungal transcriptomics uncover adaptive virulence strategies in the sugarcane smut pathogen. | Vilanova PF et al. | β | 2025 | β |
| Chromosome-Level Genome and Variation Map of Eri Silkworm <i>Samia cynthia ricini</i>. | Lu K et al. | β | 2025 | β |
| Circulating Tumor DNA Profiling Identifies Actionable Mutations as Prognostic Markers in Advanced Neuroendocrine Tumors. | Zhou N et al. | β | 2025 | β |
| Climate Adaptation and Genetic Differentiation in the Mosquito Species Culex tarsalis. | Liao Y et al. | β | 2025 | β |
| Clinical and data-driven optimization of Genomiser for rare disease patients: experience from the Hong Kong Genome Project. | Xi AMC et al. | β | 2025 | β |
| Clinical and Genetic Characteristics of Senior-Loken Syndrome Patients in Korea. | Song JR et al. | β | 2025 | β |
| Clinical and Molecular Presentation of a Patient with Paternal Uniparental Isodisomy of Chromosome 16. | Panchenko E et al. | β | 2025 | β |
| Clinical characteristics and treatment of EGFR exon 19 L747 mutation in advanced NSCLC: a retrospective study. | Yang Y et al. | β | 2025 | β |
| Clinical, molecular, and radiological predictors of prognosis in newly diagnosed astrocytoma, IDH-mutant, WHO grade 4. | Lasica AB et al. | β | 2025 | β |
| Clinical use of whole-genome sequencing in children with developmental delay or intellectual disability. | Xu J et al. | β | 2025 | β |
| Clinical utility of genome sequencing in rare diseases: lessons from a single-center study of 1,452 Korean families. | Lee S et al. | β | 2025 | β |
| Clinicopathological, Genomic, and Transcriptomic Feature Analysis of Primary Adrenal Large B-cell Lymphoma: Insights Into Immune-privileged Sites. | Deng S et al. | β | 2025 | β |
| Clonal hematopoiesis in apparent treatment-resistant hypertension, insights from multiple medical centers and community-based cohorts. | Lv C et al. | β | 2025 | β |
| CluVar: clustering of variants using autoencoder for inferring cancer subclones from single cell RNA sequencing data. | Kim CW et al. | β | 2025 | β |
| Co-domestication of cold tolerance and female flower is determined by CsEIN2 in cucumber. | Li C et al. | β | 2025 | β |
| Colorectal Air-Liquid Interface Organoids Preserve Tumour-Immune Architecture and Reveal Local Treg Expansion After PD-1 Blockade. | CΓ³rdoba L et al. | β | 2025 | β |
| Combined somatic mutation and transcriptome analysis reveals region-specific differences in clonal architecture in human cortex. | Viswanadham VV et al. | β | 2025 | β |
| Combining QTL mapping and RNA-Seq reveals candidate genes controlling flag leaf width in foxtail millet. | Wang Z et al. | β | 2025 | β |
| Combining re-evaluation and new exome sequencing to identify novel genetic variants and candidate genes in Iranian families with non-syndromic hearing loss. | Rezvandeh RR et al. | β | 2025 | β |
| Common inherited loss-of-function mutations in the innate sensor NOD2 contribute to exceptional immune response to cancer immunotherapy. | Barnet MB et al. | β | 2025 | β |
| Comparative Analyses of Four Reference Genomes Reveal Exceptional Diversity and Weak Linked Selection in the Yellow Monkeyflower (Mimulus guttatus) Complex. | Lovell JT et al. | β | 2025 | β |
| Comparative analysis of butternut (Juglans cinerea) and Japanese walnut (Juglans ailantifolia) chloroplast genomes. | Ebrahimi A et al. | β | 2025 | β |
| Comparative analysis of chloroplast genomes and transcriptomics reveals the adaptation of <i>Glycyrrhiza</i> to salt stress. | Huang M et al. | β | 2025 | β |
| Comparative analysis of Chloroplast genomes in 48 samples from 5 species and 2 varieties of AgropyronΒ Gaertn. (Poaceae, Triticeae). | Zheng L et al. | β | 2025 | β |
| Comparative genomic analyses reveal different genetic basis of two types of fruit in Maloideae. | Wang Y et al. | β | 2025 | β |
| Comparative genomics analyses reveal genomic variation and evolutionary adaptation in Dendrobium orchids. | Chen BJ et al. | β | 2025 | β |
| Comparative mitochondrial genome and transcriptome analyses reveal strain-specific features of RNA editing in Trypanosoma brucei. | Zhao X et al. | β | 2025 | β |
| Comparative outcome and prognostic factor analysis among MDS/AML patients with TP53 mutations, snps, and wild type. | Yang X et al. | β | 2025 | β |
| Comparative Transcriptomics Unveils Pathogen-Specific mTOR Pathway Modulation in <i>Monochamus alternatus</i> Infected with Entomopathogenic Fungi. | Guan H et al. | β | 2025 | β |
| Comparison between SNP array and imputed data to estimate population structure and ROH hotspots in horse breeds. | Chessari G et al. | β | 2025 | β |
| Comparison of the Genetic Basis of Yield Traits Between Main and Ratoon Rice in an Eight-Way MAGIC Population. | Han Z et al. | β | 2025 | β |
| Compound inheritance of EHHADH and MASP1 mutations contributes to nonsyndromic cleft lip: familial analysis and zebrafish models. | Swatowska P et al. | β | 2025 | β |
| Comprehensive Analysis of Agronomic Traits, Saponin Accumulation, and SNP-Based Genetic Diversity in Different Cultivars of <i>Panax notoginseng</i>. | Wu Y et al. | β | 2025 | β |
| Comprehensive fragmentation of cell-free repetitive DNA for enhanced cancer detection in plasma. | Zhang M et al. | β | 2025 | β |
| Comprehensive Genetic Map of Muscle Lipidome Reveals Novel Insights Into Flavor Variation in Ruminant Meat. | Zhang X et al. | β | 2025 | β |
| Comprehensive Genomic Characterization of Congenital and Infantile Cancers Reveals High Yield of Medically Meaningful Findings. | Mathew MT et al. | β | 2025 | β |
| Comprehensive genomic study of Plasmodium falciparum in Sierra leone: genetic variation and resistance patterns. | Zhan XJ et al. | β | 2025 | β |
| Comprehensive GWAS and transcriptome analysis discovered new candidate genes for powdery mildew response in pea (Pisum sativum L.). | Zhong X et al. | β | 2025 | β |
| Comprehensive Mutational Landscape of Yeast Mutator Strains Reveals the Genetic Basis of Mutational Signatures in Cancer. | Liu L et al. | β | 2025 | β |
| Congenital Anomalies in a Neonate With Partial Monosomy of Chromosome 21 q Arm: A Case Report. | Joy P et al. | β | 2025 | β |
| Conservation Implications for the Iberian Narrow Endemic <i>Androsace cantabrica</i> (Primulaceae) Using Population Genomics With Target Capture Sequence Data. | Liang KJ et al. | β | 2025 | β |
| Construction of a core collection and SNP fingerprinting database for Chinese chive (<i>Allium tuberosum</i>) through Hyper-seq based population genetic analysis. | Zhang H et al. | β | 2025 | β |
| Construction of a Core Germplasm and Identification of Candidate SNPs Associated with Growth Performance of Epinephelus tukula by Whole-Genome Resequencing. | Cao L et al. | β | 2025 | β |
| Construction of a Genome-Wide Copy Number Variation Map and Association Analysis of Black Spot in Jujube. | Luo Y et al. | β | 2025 | β |
| Contrasting Evolutionary Trajectories Under Paternal Genome Elimination in Male and Female Citrus Mealybugs. | Mongue AJ et al. | β | 2025 | β |
| Convergent domestication of bitter apples and pears by selecting mutations of MYB transcription factors to reduce proanthocyanidin levels. | Wang Y et al. | β | 2025 | β |
| Convergent evolution of antibiotic resistance mechanisms between pyrrolobenzodiazepines and albicidin in multidrug resistant Klebsiella pneumoniae. | Surani YM et al. | β | 2025 | β |
| Co-profiling of in situ RNA-protein interactions and transcriptome in single cells and tissues. | Cheng QX et al. | β | 2025 | β |
| CREPE (CREate Primers and Evaluate): A Computational Tool for Large-Scale Primer Design and Specificity Analysis. | Pitsch JW et al. | β | 2025 | β |
| ctDNA detectability and representativeness in seven body liquids from patients with metastatic breast cancer. | Richard F et al. | β | 2025 | β |
| C to U RNA editing of MFN1 is regulated by ADARB1 and associates with favourable prognosis in chronic lymphocytic leukemia. | Gonzalez Martinez A et al. | β | 2025 | β |
| Current Bioinformatics Tools in Precision Oncology. | Wolde T et al. | β | 2025 | β |
| cuteFC: regenotyping structural variants through an accurate and efficient force-calling method. | Jiang T et al. | β | 2025 | β |
| Cysteinyl leukotrienes stimulate gut absorption of food allergens to promote anaphylaxis in mice. | Hoyt LR et al. | β | 2025 | β |
| Decoding hybrid origins and genetic architecture of leaf traits variation in <i>camellia</i> via high-density 21K SNP array for genomic prediction. | Li J et al. | β | 2025 | β |
| Decoding intertumoral heterogeneity in multifocal ground-glass nodule lung cancers: Clonal evolutionary insight for precision management. | Xie CL et al. | β | 2025 | β |
| Decoding post-transcriptional gene expression controls in trypanosomatids using machine learning. | Tinti M et al. | β | 2025 | β |
| Decoding the beef cattle genome through whole-genome sequencing reveals the genetic basis of carcass and meat quality traits. | Nanaie HA et al. | β | 2025 | β |
| Decomposition of phenotypic heterogeneity in autism reveals underlying genetic programs. | Litman A et al. | β | 2025 | β |
| Delineating molecular mechanisms on the acquisition of <i>in vitro-</i>adapted colistin-resistant <i>Klebsiella pneumoniae</i> by transcriptomic analysis. | Kyung SM et al. | β | 2025 | β |
| Demography and adaptation of a species specific pollinator associated with an invasive fig tree. | Wu LH et al. | β | 2025 | β |
| De Novo Heterozygous <i>GATA3</i> Missense Variant Causes an Unexpected Phenotype of Non-Syndromic Hearing Impairment with Apparently Recessive Inheritance. | DomΓnguez-Ruiz M et al. | β | 2025 | β |
| Design, validation, and application of a 1K liquid chip for genome-wide association analysis in Alpine Merino sheep. | Guo T et al. | β | 2025 | β |
| Detection of <i>Clostridium sporogenes</i> in a Roman-era cattle mass grave at Vilauba. | Myburgh DA et al. | β | 2025 | β |
| Detection of the Candidate Genes of Economically Important Traits in Dorper Sheep Through Whole-Genome Resequencing. | Wang Z et al. | β | 2025 | β |
| Developing a core collection for the conservation of Theobroma cacao's genetic diversity. | Todd ET et al. | β | 2025 | β |
| Developing a machine-learning model to enable treatment selection for neoadjuvant chemotherapy for esophageal cancer. | Miyawaki Y et al. | β | 2025 | β |
| Development and Characterization of New SSR Markers in <i>Sclerotinia sclerotiorum</i> Using Genomic and Variant Analysis. | Lee DJ et al. | β | 2025 | β |
| Development and Characterization of Wheat-<i>Thinopyrum elongatum</i> 1B-1E Translocation Lines with Fusarium Head Blight Resistance. | Wang C et al. | β | 2025 | β |
| Development of a 5K Liquid-Phase Genome-Wide Breeding Chip for Xinglong Buffalo. | Jiao Y et al. | β | 2025 | β |
| Development of a Liquid-Phased Probe Array for Upland Cotton and Its Application in Cultivar Identification. | Tian H et al. | β | 2025 | β |
| Development of SNP panel for genetic diversity assessment, fingerprinting identification and backcross breeding in <i>Brassica oleracea</i>. | Yao X et al. | β | 2025 | β |
| Differences in gene expression and genetic variation underlying preference-performance mismatches: insights from a specialized native herbivore on an invasive toxic plant. | Ravikanthachari N et al. | β | 2025 | β |
| Direct detection of meiotic recombination events in the highly heterozygous amphioxus genome. | Tao L et al. | β | 2025 | β |
| Direct genetic transformation bypasses tumor-associated DNA methylation alterations. | Hetzel S et al. | β | 2025 | β |
| Discovery of <i>ETS1</i> as a New Gene Predisposing to Dilated Cardiomyopathy. | Ke ZP et al. | β | 2025 | β |
| Dissecting genomic regions and candidate genes for pod borer resistance and component traits in pigeonpea minicore collection. | Moghiya A et al. | β | 2025 | β |
| Distinguishing syndromic and nonsyndromic cleft palate through analysis of protein-altering de novo variants in 818 trios. | Robinson KR et al. | β | 2025 | β |
| Divergent accumulation patterns of SNVs and INDELs reveal negative selection in noncancerous cells. | Zhang L et al. | β | 2025 | β |
| Diversity of endophytic bacteria in mulberry (<i>Morus</i> spp.) scions with different genetic resources. | Zhang YF et al. | β | 2025 | β |
| DLBCL Cells Emerge after CD19 CAR T Cells with Cross-Antigen Resistance and a Gene Signature Predictive of Clinical CAR T-cell Response. | LΓΌΓΆnd F et al. | β | 2025 | β |
| DNA fragmentation factor B suppresses interferon to enable cancer persister cell regrowth. | Williams AF et al. | β | 2025 | β |
| Double-stranded DNA deaminase DddA<sup>E1347A</sup> can increase the efficiency and targeting range of cytidine base editors. | Qian Y et al. | β | 2025 | β |
| Duplicated Genes on Homologous Chromosomes Decipher the Dominant Epistasis of the Fiberless Mutant in Cotton. | Le Y et al. | β | 2025 | β |
| Durum wheat mutants with enhanced disease resistance to stripe rust show differential responses to other fungal diseases. | Lunde C et al. | β | 2025 | β |
| Effect of Bdq-Containing Regimen and Molecular Detection of Bdq Resistance among Pre-XDR-TB Patients with Unfavorable Outcomes. | Ding F et al. | β | 2025 | β |
| Effects of resource packaging on the adaptative and pleiotropic consequences of evolution. | Ahlawat N et al. | β | 2025 | β |
| Efficacy of anti-PD1 therapy in PD1-high mRNA tumors across multiple cancer types: results from cohort 1 and cohort 2 of the phase II SOLTI-1904 ACROPOLI trial. | SeguΓ E et al. | β | 2025 | β |
| Efficacy, safety, and predictive biomarkers of neoadjuvant nab-paclitaxel and pembrolizumab in hormone receptor-positive breast cancer: A randomized pilot trial. | Waks AG et al. | β | 2025 | β |
| Egg-laying ChickenGTEx resource deciphers context-specific regulatory effects on fertility traits. | Zhu D et al. | β | 2025 | β |
| Emanating candidate genes responsible for fruit quality traits in citrus through GBS-based genome wide association studies. | Bala H et al. | β | 2025 | β |
| EMS-induced genomic variation and QTL-seq analysis of safflower spininess through whole genome sequencing (WGS). | Karami-Moalem S et al. | β | 2025 | β |
| Ending diagnostic odyssey by reanalysis of whole exome sequencing data: reclassification of suspected Fanconi anemia cases to dyskeratosis congenita and Diamond-Blackfan anemia. | Tejero E et al. | β | 2025 | β |
| Enhanced resistance of metal sequestering agents by reconfiguration of the Staphylococcus aureus cell wall. | Paterson JR et al. | β | 2025 | β |
| Enhancer RNA-mediated transcriptional regulatory programs reveal the malignant progression of glioma. | Ma Y et al. | β | 2025 | β |
| Enrichment of tandem repeat element variants near CHD genes identified by short- and long-read genome sequencing. | Suresh A et al. | β | 2025 | β |
| Environmental monitoring and equipment sanitation to mitigate <i>Listeria</i> risks in a soil-based controlled environment agriculture system. | Ayala-San NicolΓ‘s M et al. | β | 2025 | β |
| Epigenetic priming of mammalian embryonic enhancer elements coordinates developmental gene networks. | Todd CD et al. | β | 2025 | β |
| Epigenetic profiling identifies markers of endocrine resistance and therapeutic options for metastatic castration-resistant prostate cancer. | Severson TM et al. | β | 2025 | β |
| EPI-SauriCas9-based mouse ovarian cancer models recapitulating pten deletion in patients. | Chen W et al. | β | 2025 | β |
| Epithelial WNT secretion drives niche escape of developing gastric cancer. | Lee J et al. | β | 2025 | β |
| Estimating allele frequencies, ancestry proportions and genotype likelihoods in the presence of mapping bias. | GΓΌnther T et al. | β | 2025 | β |
| Estimating Recent and Historical Effective Population Size of Marine and Freshwater Sticklebacks. | Feng X et al. | β | 2025 | β |
| Estimation of genome-wide coupling in rattlesnake hybrids provides insight into the process of speciation and its progress. | Francioli YZ et al. | β | 2025 | β |
| Evaluating sensitivity of NGS-based mutation detection across diverse sample types in prostate cancer. | Jiang K et al. | β | 2025 | β |
| Evaluating the early diversification of Yersinia pestis and its phylogeographic expansion over 96 years of evolution in Madagascar. | Randriantseheno LN et al. | β | 2025 | β |
| Evaluating the Utility of Fresh Tissue in Molecular Diagnostics of Colorectal Cancer. | KaΕuΕΌewski T et al. | β | 2025 | β |
| Evaluation of false positive and false negative errors in targeted next generation sequencing. | Moon Y et al. | β | 2025 | β |
| Evaluation of genetic diversity and selection signals in gayal populations across four countries through whole-genome resequencing. | Liu X et al. | β | 2025 | β |
| Evidence of long-term purging of mutation burden in killer whale Orcinus orca genomes. | Foote AD et al. | β | 2025 | β |
| Evidence of positive selection and a novel phylogeny among five subspecies of song sparrow (<i>Melospiza melodia</i>) in Alaska. | Oliver Brown CC et al. | β | 2025 | β |
| Evolutionary histories of functional mutations during the domestication and spread of <i>japonica</i> rice in Asia. | Alam O et al. | β | 2025 | β |
| Evolutionary insights into Na<sup>+</sup>/K<sup>+</sup>-ATPase-mediated toxin resistance in the Crested Serpent-eagle preying on introduced cane toads in Okinawa, Japan. | Tobe A et al. | β | 2025 | β |
| Evolutionary unpredictability in cancer model systems. | Chattopadhyay S et al. | β | 2025 | β |
| Evolution of beta-lactam resistance causes fitness reductions and several cases of collateral sensitivities in the human pathogen <i>Haemophilus influenzae</i>. | Petersen S et al. | β | 2025 | β |
| Evolution of Mycobacterium tuberculosis transcription regulation is associated with increased transmission and drug resistance. | Culviner PH et al. | β | 2025 | β |
| Exome analysis reveals species divergence in TYR and identifies species genetic markers in five endemic Macaca species on Sulawesi Island. | Yan X et al. | β | 2025 | β |
| Exome sequencing reveals new insights into the germline landscape of inflammatory breast cancer among Tunisian patients. | Boujemaa M et al. | β | 2025 | β |
| Expanding the clinical and genetic spectrum of GLUL-related developmental and epileptic encephalopathy. | Oh DE et al. | β | 2025 | β |
| Expanding the Phenotypic Spectrum of SPG4: Autism Spectrum Disorder in Early-Onset and Complex SPAST-HSP and Case Study. | Quaranta CA et al. | β | 2025 | β |
| Experimental evolution of a pathogen confronted with innate immune memory increases variation in virulence. | KorΕ‘a A et al. | β | 2025 | β |
| Exploring drug resistance via intercellular crosstalk using spatial transcriptomics in high-grade serous ovarian carcinoma. | Suzuki H et al. | β | 2025 | β |
| Exploring transcriptomic and genomic differences between susceptible and resistant fetal pigs to maternal PRRSV infection at late gestation. | Ko H et al. | β | 2025 | β |
| Expression of kinetochore component NDC80 promotes esophageal squamous cell carcinoma cells proliferation and migration. | Shi Y et al. | β | 2025 | β |
| Extremely early genomic events and temporal order of esophageal squamous cell carcinogenesis: Longitudinal self-comparison of progressors and non-progressors. | Liu Y et al. | β | 2025 | β |
| Fast, cost-effective and flexible DNA sequencing by roll-to-roll fluidics. | Qin Y et al. | β | 2025 | β |
| Faster adaptation but slower divergence of X chromosomes under paternal genome elimination. | Baird RB et al. | β | 2025 | β |
| Fifteen millennia of human mitogenome evolution in Sicily. | Tommasi A et al. | β | 2025 | β |
| Fine Mapping and Candidate Gene Identification of ORUFILM03g000096 Gene in Weedy Rice LM8: Insights into Grain Length Regulation. | Li F et al. | β | 2025 | β |
| Fine mapping, introgression, and KASP marker development for powdery mildew resistance in watermelon using an interspecific RIL population (Citrullus mucosospermusβΓβC. lanatus). | Kumar R et al. | β | 2025 | β |
| Fine Mapping of a Major Locus for Leaf Sheath Hairiness in Wheat Identifies <i>TaSAIN1-4D</i> as a Candidate Gene. | Wu L et al. | β | 2025 | β |
| Forensic assessment of kinship, genomic ancestry, and natural history of an iconic tiger of Harlem, New York City. | Wu ZB et al. | β | 2025 | β |
| Forward and reverse genomic screens enhance the understanding of phenotypic variation in a large Chinese rhesus macaque cohort. | Zhang BL et al. | β | 2025 | β |
| Forward genetics in <i>C. elegans</i> reveals genetic adaptations to polyunsaturated fatty acid deficiency. | Kaper D et al. | β | 2025 | β |
| Functional analysis of the FGF2 gene in horn development in sheep and identification of key regulatory variants. | Liu F et al. | β | 2025 | β |
| Functional genomics and tumor microenvironment analysis reveal prognostic biological subtypes in Mantle cell lymphoma. | Sharma S et al. | β | 2025 | β |
| Functional synapses between neurons and small cell lung cancer. | Sakthivelu V et al. | β | 2025 | β |
| GCRP: Integrated Global Chicken Reference Panel from 11,951 Chicken Genomes. | Zhu D et al. | β | 2025 | β |
| Gender-Specific Next-Generation Sequencing Reveals First Allelic Variation Patterns in Dementia Risk Among Bangladeshis: The CARED Study. | Ranjan R et al. | β | 2025 | β |
| Gene-Based Burden Testing of Rare Variants in Hemiplegic Migraine: A Computational Approach to Uncover the Genetic Architecture of a Rare Brain Disorder. | Alfayyadh MM et al. | β | 2025 | β |
| Gene profiling and clinicopathological features for prognostic modeling of recurrence in non-metastatic clear-cell renal cell carcinoma. | Yan X et al. | β | 2025 | β |
| Genetic alterations and aberrant hormonal pathways in thymic epithelial tumors. | Zhang Y et al. | β | 2025 | β |
| Genetic Analyses, BSA-Seq, and Transcriptome Analyses Reveal Candidate Genes Controlling Leaf Plastochron in Rapeseed (<i>Brassica napus</i> L.). | Qin M et al. | β | 2025 | β |
| Genetic analysis and identification of the candidate genes of maize resistance to Ustilago maydis by BSA-Seq and RNA-Seq. | Wang J et al. | β | 2025 | β |
| Genetic analysis of congenital stationary night blindness and Oguchi disease in an Indian cohort. | Sundaramurthy S et al. | β | 2025 | β |
| Genetic analysis of wild walnuts in Xinjiang based on whole-genome resequencing. | Liu Y et al. | β | 2025 | β |
| Genetic and epigenetic markers in the METTL21C gene associated with umbilical hernia in pigs. | Wozniak J et al. | β | 2025 | β |
| Genetic and histological characterization of a dwarf mutant in melon (Cucumis melo L.) reveals potential for breeding semi-dwarf cultivars. | Han Z et al. | β | 2025 | β |
| Genetic and phenotypic insights into Cyberlindnera jadinii as a promising yeast for industrial biotechnology. | Wu J et al. | β | 2025 | β |
| Genetic assessment and Identification of genes related to characterization of Guangdong local goose breeds based on modern and historical genomes. | Zhang X et al. | β | 2025 | β |
| Genetic background of neurological disorders with basal ganglia calcification. | Yektay Farahmand M et al. | β | 2025 | β |
| Genetic characteristics of primary bone marrow large B-cell lymphoma. | Yeh YC et al. | β | 2025 | β |
| Genetic Characterization of 128 Chinese Individuals with Neurodevelopmental Disorders via Whole-Exome Sequencing. | Qin Y et al. | β | 2025 | β |
| Genetic Characterization of MODY in Iranian Families Using Multigenerational-Based Whole-Exome Sequencing Approach. | Sefid F et al. | β | 2025 | β |
| Genetic Consequences of Tree Planting Versus Natural Colonisation: Implications for Afforestation Programmes in the United Kingdom. | Friis G et al. | β | 2025 | β |
| Genetic dissection of cotton fiber quality and yield components using an interspecific introgression population. | Wang Z et al. | β | 2025 | β |
| Genetic dissection of root traits in a rice 'global MAGIC' population for candidate traits to breed for reduced methane emission. | Roy RK et al. | β | 2025 | β |
| Genetic diversity analysis and multi-fingerprint map construction of Naematelia aurantialba germplasm resources. | Zeng Y et al. | β | 2025 | β |
| Genetic diversity and evolutionary insights of Dali tea (Camellia taliensis) in the Lancang River Basin: Implications for tea breeding and resource conservation. | Tao Y et al. | β | 2025 | β |
| Genetic diversity and evolution of rice centromeres. | Xie L et al. | β | 2025 | β |
| Genetic diversity and population structure of the natural population of Helicoverpa armigera in Northwest China using Genotyping by Sequencing (GBS) technology. | Ning Z et al. | β | 2025 | β |
| Genetic Diversity of Indigenous Rice Varieties Cultivated by Mon-Khmer-Speaking Ethnic Communities in Thailand. | Sombat C et al. | β | 2025 | β |
| Genetic diversity of the Y-chromosome in domestic animals: from evolutionary insights to functional implications. | Panigrahi M et al. | β | 2025 | β |
| Genetic evolution of parental populations and construction of core germplasm populations in qinghai spruce seed orchard based on SLAF-seq technology. | Zhao H et al. | β | 2025 | β |
| Genetic fine-mapping of body weight and size traits at 120 days of age in Lion-head geese. | Huang Z et al. | β | 2025 | β |
| Genetic Heterogeneity Underlying Familial Short Stature. | Comel M et al. | β | 2025 | β |
| Genetic history of Scythia. | Andreeva TV et al. | β | 2025 | β |
| Genetic Insights into Familial Hypospadias Identifying Rare Variants and Their Potential Role in Urethral Development. | Al-Shafai KN et al. | β | 2025 | β |
| Genetic linkage mapping in Megathyrsus maximus (Jacq.) with multiple dosage markers. | Gesteira GS et al. | β | 2025 | β |
| Genetic mapping in the red mason bee implicates ANTSR as an ancient sex-determining locus in bees and ants. | RΓΆnneburg T et al. | β | 2025 | β |
| Genetic parameters and genomic prediction of egg production traits in ducks. | Han C et al. | β | 2025 | β |
| Genetic profile of ASXL1 gene in risk assessment in acute myeloid leukemia. | Bamusa SA et al. | β | 2025 | β |
| Genetic profiling of synchronous pituitary corticotroph adenomas. | Zhang D et al. | β | 2025 | β |
| Genetic regulation of the metabolome differs by sex, Alzheimer's disease stage, and plasma biomarker status. | Eissman JM et al. | β | 2025 | β |
| Genetic Resources for Research on the Regulatory Mechanism of Ο-3 Fatty Acids in Oysters. | Li Q et al. | β | 2025 | β |
| Genetics and context for precision health in Greater Boston. | Koyama S et al. | β | 2025 | β |
| Genetic structure analysis and core germplasm construction of Robinia pseudoacacia and its closely related species based on SNP. | Wang H et al. | β | 2025 | β |
| Genetic structure and local adaptation of <i>Nitraria sphaerocarpa</i> populations from arid northwestern China. | Ma W et al. | β | 2025 | β |
| Genetic structuring and estimation of reproductive adults in Onchocerca volvulus: A genome-wide analysis across hosts and regions. | Kumar P et al. | β | 2025 | β |
| Genetic transcriptional regulation profiling of cartilage reveals pathogenesis of osteoarthritis. | Tian W et al. | β | 2025 | β |
| Genetic Trends in General Combining Ability for Maize Yield-Related Traits in Northeast China. | Wang H et al. | β | 2025 | β |
| Genetic variants in diminished ovarian reserve and premature ovarian insufficiency: implications for assisted reproductive outcomes. | Xu Q et al. | β | 2025 | β |
| Genetic variants in HELB contribute to premature ovarian insufficiency and early age of natural menopause. | Pan Y et al. | β | 2025 | β |
| Genetic variants of cytochrome P450 2C21 identified by screening 6344 dogs influenced oxidations of the probe drug omeprazole. | Uno Y et al. | β | 2025 | β |
| Genetic variants of LncRNA associated with splicing regulation and their impact on ovarian cancer development. | Zou L et al. | β | 2025 | β |
| Genetic variation among progeny shapes symbiosis in a basidiomycete with poplar. | Dauphin B et al. | β | 2025 | β |
| Genetic Variation in Hydrochlorothiazide Response-Related Genes Among Hypertensive Individuals in Soweto, South Africa. | Nyamupangedengu K et al. | β | 2025 | β |
| Gene variants of interferon induced with helicase C domain 1 in Japanese patients with Dermatomyositis-associated rapidly progressive interstitial lung disease: a genetic association study using whole-exome and Sanger sequencing. | Okamoto M et al. | β | 2025 | β |
| Genome analyses suggest recent speciation and postglacial isolation in the Norwegian lemming. | Lord E et al. | β | 2025 | β |
| Genome analysis and machine learning-based feature selection strategy reveal potential drug-resistance determinants in <i>Nakaseomyces glabratus</i>. | Wang Q et al. | β | 2025 | β |
| Genome architecture evolution in an invasive copepod species complex. | Du Z et al. | β | 2025 | β |
| Genome assembly of two allotetraploid cotton germplasms reveals mechanisms of somatic embryogenesis and enables precise genome editing. | Xu Z et al. | β | 2025 | β |
| Genome-assisted identification of wheat leaf rust resistance gene Lr.ace-4A/Lr30. | Yang J et al. | β | 2025 | β |
| Genome-environment association analysis reveals climate-driven adaptation of chickens. | Zhao X et al. | β | 2025 | β |
| Genome of an early Okhotsk individual reveals ancient admixture between Jomon and Kamchatka lineages. | Sato T et al. | β | 2025 | β |
| Genome of the extinct Gotland cattle breed. | Johnsson M et al. | β | 2025 | β |
| Genome region aware CADD thresholds for noncoding variant prioritization. | Tenywa JF et al. | β | 2025 | β |
| Genome resequencing and custom genotyping elucidates the origin and dissemination history of an emblematic grapevine cultivar, 'Tempranillo Tinto'. | Tello J et al. | β | 2025 | β |
| Genome-resolved tracking of <i>Penicillium commune</i> in a bakery facility highlights long-term environmental persistence. | Fagerlund A et al. | β | 2025 | β |
| Genome sequencing for the diagnosis of intellectual disability as a paradigm for rare diseases in the French healthcare setting: the prospective DEFIDIAG study. | El Chehadeh S et al. | β | 2025 | β |
| Genome sequencing identifies uniparental isodisomy of chromosome 2p and a homozygous <i>ABCG5</i> variant, enabling effective treatment of pediatric hypercholesterolemia after 13 years of therapeutic resistance: A case report. | Kassaie H et al. | β | 2025 | β |
| Genome Variation in Three Anthophora Bee Species Reflects Divergent Demographic Histories. | Taliadoros D et al. | β | 2025 | β |
| Genome-wide adaptive selection and functional annotation of regulatory variation in the Yangxin pig. | Liu S et al. | β | 2025 | β |
| Genome-wide association analysis and gene mining of flavonoids in Xanthoceras sorbifolia. | Huo Y et al. | β | 2025 | β |
| Genome-Wide Association Analysis and Genomic Selection for Growth Traits in Grass Carp (<i>Ctenopharyngodon idella</i>). | Chen Y et al. | β | 2025 | β |
| Genome wide association analysis of flavour related metabolites in tea germplasm [Camellia sinensis (L.) Kuntze] from Assam using a genotyping by sequencing strategy. | Konwar T et al. | β | 2025 | β |
| Genome-wide association analysis reveals novel genetic loci involved in rice brown spot resistance. | Huang Y et al. | β | 2025 | β |
| Genome-wide association and fine-mapping analyses identify novel candidate genes affecting serum cortisol levels using imputed whole-genome sequencing data in pigs. | Kim TH et al. | β | 2025 | β |
| Genome-wide association studies reveal genetic diversity and regulatory loci underlying dwarfing traits in banana. | Li Y et al. | β | 2025 | β |
| Genome-wide association study and genome prediction of tallness trait in spinach phenotyping. | Alatawi I et al. | β | 2025 | β |
| Genome-Wide Association Study Dissects the Genetic Architecture of Pericarp Traits in Fresh-Eating Maize. | Jin Y et al. | β | 2025 | β |
| Genome-wide association study for plant height and ear height in maize under well-watered and water-stressed conditions. | Wen X et al. | β | 2025 | β |
| Genome-Wide Association Study for Weight-Related Traits in <i>Scylla paramamosain</i> Using Whole-Genome Resequencing. | Chen L et al. | β | 2025 | β |
| Genome-wide association study identifies candidate genes affecting major traits of Ziwuling black goat. | Zhou C et al. | β | 2025 | β |
| Genome-wide association study identifying immune markers in Qingyuan partridge chickens infected with avian Leukosis virus subgroup J. | Jie H et al. | β | 2025 | β |
| Genome-Wide Association Study of Immune Indices in Yaks. | Yu D et al. | β | 2025 | β |
| Genome-wide association study of Northern corn leaf blight (NCLB) resistance using temperate and subtropical maize recombinant inbred lines. | Gong X et al. | β | 2025 | β |
| Genome-wide association study of somatic GATA1s mutations in newborns with Down syndrome. | Li Y et al. | β | 2025 | β |
| Genome-Wide Association Study Revealed Candidate Genes Associated with Litter Size, Weight, and Body Size Traits in Tianmu Polytocous Sheep (<i>Ovis aries</i>). | Liu W et al. | β | 2025 | β |
| Genome-wide association study reveals candidate genes associated with egg-laying performance in Wuhua yellow chicken. | Huang X et al. | β | 2025 | β |
| Genome-wide association study reveals novel loci associated with body size and carcass yields in Shaoxing ducks. | Xu W et al. | β | 2025 | β |
| Genome-wide association study reveals novel SNP loci and candidate genes linked to flowering time in upland cotton. | Guo X et al. | β | 2025 | β |
| Genome-wide association study to identification of candidate genes influencing key seed traits in Perilla frutescens. | Kim MS et al. | β | 2025 | β |
| Genome-Wide Characterization of a Carbon Ion Beam-Induced Soybean Mutant Population Reveals Extensive Genetic Variation for Trait Improvement. | Liu X et al. | β | 2025 | β |
| Genome-Wide Genetic Diversity and Population Structure of <i>Sillago sinica</i> (Perciformes, Sillaginidae) from the Coastal Waters of China: Implications for Phylogeographic Pattern and Fishery Management. | Yang T et al. | β | 2025 | β |
| Genome-wide Genetic Mutations Accumulated in Pigs Genome-edited for Xenotransplantation and Their Filial Generation. | Huo ιε¦δΊ X et al. | β | 2025 | β |
| Genome-Wide, High-Density Genotyping Approaches for Plant Germplasm Characterisation (Methods and Applications). | Werghi S et al. | β | 2025 | β |
| Genome-wide mapping of EBV-induced genomic variations identifies the role of MUC19 in EBV latency. | Yu J et al. | β | 2025 | β |
| Genome-wide selection analysis identifies genes associated with mandibular defects in Duolang sheep. | Cao H et al. | β | 2025 | β |
| Genome-Wide SNP Analysis Reveals Population Structure and Genetic Diversity in <i>Lycium ruthenicum</i> Murr. | Yang R et al. | β | 2025 | β |
| Genomic alterations linked to recurrence risk in high-grade serous ovarian cancer revealed by deep targeted sequencing. | Park YH et al. | β | 2025 | β |
| Genomic analyses of Asiatic Mouflon in Iran provide insights into the domestication and evolution of sheep. | Wang DF et al. | β | 2025 | β |
| Genomic Analysis Reveals Annual Variation in the Migratory Pathways to East Asia in the Brown Planthopper (<i>Nilaparvata lugens</i>). | Choi NJ et al. | β | 2025 | β |
| Genomic Analysis Reveals Inbreeding in an Island Population of Alexander Archipelago Wolves. | Zarn KE et al. | β | 2025 | β |
| Genomic and population genomic analyses reveal contrasting diversity and demographic histories in a critically endangered and a widespread <i>Oreocharis</i> species. | Peng N et al. | β | 2025 | β |
| Genomic and Single-Cell Analyses Characterize Patient-Derived Tumor Organoids to Enable Personalized Therapy for Head and Neck Squamous Cell Carcinoma. | Um JH et al. | β | 2025 | β |
| Genomic and transcriptomic analyses provide new insights into the complex impacts of bud mutation in peach. | Rui G et al. | β | 2025 | β |
| Genomic and transcriptomic landscape of carcinogenesis in patients with gastric adenocarcinoma and proximal polyposis of the stomach (GAPPS). | Matsumoto C et al. | β | 2025 | β |
| Genomic Architecture of Nestmate Recognition Cues in the Desert Ant. | Cohen P et al. | β | 2025 | β |
| Genomic architecture of purebred and crossbred Moghani lambs with Texel and Booroola sheep. | Talebi R et al. | β | 2025 | β |
| Genomic-based revelation of genetic structure and adaptive characterization of Schizopygopsis malacanthus in the Jinsha River and Yalong River. | Yan T et al. | β | 2025 | β |
| Genomic characterization and epidemiology of Mycobacterium tuberculosis lineage 2 isolates from Kazakhstan. | Auganova D et al. | β | 2025 | β |
| Genomic characterization of tumor mutational burden-high breast carcinomas. | Vougiouklakis T et al. | β | 2025 | β |
| Genomic characterization of XDR Mycobacterium tuberculosis isolates in Argentina (2006-2015). | Castello FA et al. | β | 2025 | β |
| Genomic data define species delimitation in Liberica coffee with implications for crop development and conservation. | Davis AP et al. | β | 2025 | β |
| Genomic epidemiological analysis reveals new insights into the resurgence of <i>Mycoplasma pneumoniae</i> in China. | Wang X et al. | β | 2025 | β |
| Genomic epidemiology of <i>Histoplasma</i> in Africa. | Mapengo RE et al. | β | 2025 | β |
| Genomic Evaluation of Assisted Gene Flow Options in an Endangered Rattlesnake. | Mathur S et al. | β | 2025 | β |
| Genomic Evaluation of Canine Prostatic Carcinomas as a Model for the Human Disease: or 'UC or not UC - that is the question'. | Thomas R et al. | β | 2025 | β |
| Genomic evidence for a-Ξ± heterothallic and Ξ±-Ξ± unisexual mating and recombination in an environmental Cryptococcus deneoformans population. | Hitchcock M et al. | β | 2025 | β |
| Genomic Identification and Validation of Candidate Genes Associated with Alkalinity Tolerance in Exopalaemon carinicauda. | Yan K et al. | β | 2025 | β |
| Genomic insights and SSR marker development for trait improvement in Pleurotus giganteus for tropical cultivation. | Yang Y et al. | β | 2025 | β |
| Genomic insights into clonal diversity in UK populations of the potato aphid, Macrosiphum euphorbiae. | Whitehead M et al. | β | 2025 | β |
| Genomic Insights Into Early-Stage Selective Filtering During the Transport Stage of Biological Invasions. | Chen Y et al. | β | 2025 | β |
| Genomic Insights into Genetic Diversity and Adaptation of Nanyang Cattle: Implications for Conservation and Breeding. | Zhang Y et al. | β | 2025 | β |
| Genomic insights into population structure, genetic diversity, and key traits of Jiangxi indigenous pigs. | Ji H et al. | β | 2025 | β |
| Genomic insights into the divergence between hulled and hulless oats. | Li W et al. | β | 2025 | β |
| Genomic investigation of a non-travel Plasmodium falciparum case linked to imported malaria in China's post-elimination era. | Luo F et al. | β | 2025 | β |
| Genomic landscape and molecular evolutionary trajectories of renal epithelioid angiomyolipoma and benign angiomyolipoma. | Anwaier A et al. | β | 2025 | β |
| Genomic parallelism defines repeated evolution of an inducible offense. | Levis NA et al. | β | 2025 | β |
| Genomic pathogenic alterations in the SWI/SNF complex compromise the outcomes of immunotherapy in Chinese patients with KRAS-mutant NSCLC by downregulating STING expression. | Gao L et al. | β | 2025 | β |
| Genomic Prediction of Adaptation in Common Bean (<i>Phaseolus vulgaris</i> L.) Γ Tepary Bean (<i>P. acutifolius</i> A. Gray) Hybrids. | LΓ³pez-HernΓ‘ndez F et al. | β | 2025 | β |
| Genomic prediction of agronomic traits in perennial ryegrass (Lolium perenne L.) and genotype x environment interactions at the limit of the species distribution. | Johansen NH et al. | β | 2025 | β |
| Genomic profiles of <i>Pyricularia oryzae</i> in Sub-Saharan Africa: exploring population differences and their evolutionary implications in the region. | Onaga G et al. | β | 2025 | β |
| Genomic profiling in hidradenitis suppurativa: InterOmics pipeline for DNA-RNA sequencing highlights HLA variants, keratin-associated mutations and extracellular matrix alterations as contributing factors to HS pathogenesis. | Cavalcanti BrandΓ£o LA et al. | β | 2025 | β |
| Genomic resequencing reveals genetic diversity, population structure, and core collection of durian germplasm. | Zhong Y et al. | β | 2025 | β |
| Genomics-driven discovery of superior alleles and genes for yellow rust resistance in wheat. | Wu J et al. | β | 2025 | β |
| Genomic selection for growth and wood properties in multi-generation hybrid populations of <i>Populus deltoides</i>. | Zhou X et al. | β | 2025 | β |
| Genomic selection with GWAS-identified QTL markers enhances prediction accuracy for quantitative traits in poplar (Populus deltoides). | Guo C et al. | β | 2025 | β |
| Genomic Signatures and Demographic History of the Widespread and Critically Endangered Yellow-Breasted Bunting. | Chen G et al. | β | 2025 | β |
| Genomic Signatures of Adaptive Evolution in <i>Taenioides</i> sp. During Northward Invasion. | Huang K et al. | β | 2025 | β |
| Genomic signatures of subterranean lifestyle and ecological adaptation in Myospalax. | Wan N et al. | β | 2025 | β |
| Genotype-phenotype correlations in 18 European patients with heterozygous <i>KIF1A</i> variants: key considerations for assessing <i>KIF1A</i> variant causality. | Uhrova Meszarosova A et al. | β | 2025 | β |
| Genotyping-by-sequencing of Illicium difengpi highlights its potential genetic diversity and conservation status. | Qin B et al. | β | 2025 | β |
| Geographic Divergence and Putative Candidate Gene Discovery of Rice Grain Quality in China. | Wang F et al. | β | 2025 | β |
| Germline mutation profiling of breast cancer patients using a non-BRCA sequencing panel. | Panigoro SS et al. | β | 2025 | β |
| Germline pathogenic variation impacts somatic alterations and patient outcomes in pediatric central nervous system tumors. | Corbett RJ et al. | β | 2025 | β |
| Germline variants in <i>UHRF1</i> are associated with multilocus imprinting disturbance in humans and mice. | Ochoa E et al. | β | 2025 | β |
| Germline variants of the POLH and RAD51 genes are candidate variants associated with risk of hormone receptor-negative young-onset breast cancer. | Yazaki S et al. | β | 2025 | β |
| Ginger genome reveals the SMPED1 gene causing sex-phase synchrony and outcrossing in a flowering plant. | Zhao JL et al. | β | 2025 | β |
| Global coral genomic vulnerability explains recent reef losses. | Selmoni O et al. | β | 2025 | β |
| Global Pangenome Analysis Highlights the Critical Role of Structural Variants in Cattle Improvement and Identifies a Unique Event as a Novel Enhancer in IGFBP7+ Cells. | Dai S et al. | β | 2025 | β |
| Global Stress Responses Identify the Functionally Divergent Regulators Required for <i>Candida auris</i> Commensalism and Pathogenicity. | Xu C et al. | β | 2025 | β |
| Gone With the Wind: Exploring a Vanished Rock Dove, <i>Columba livia</i>, Hybrid Zone in the Sahara Desert. | HernΓ‘ndez-Alonso G et al. | β | 2025 | β |
| GPS: Harnessing data fusion strategies to improve the accuracy of machine learning-based genomic and phenotypic selection. | Wu H et al. | β | 2025 | β |
| GWAS and GS analysis revealed the selection and prediction efficiency for yield, plant morphological, and fiber quality in Gossypium barbadense. | Yang T et al. | β | 2025 | β |
| GWAS and RNA-seq reveal novel loci and genes of low-nitrogen tolerance in cucumber (<i>Cucumis sativus</i> L.). | Wu H et al. | β | 2025 | β |
| GWAS and Selective Sweep Analysis Reveal the Genetic Basis of Papilla Number in the Sea Cucumber (<i>Apostichopus japonicus</i>). | Wang Y et al. | β | 2025 | β |
| GWAS Reveals Key Candidate Genes Associated with Milk-Production in Saanen Goats. | Li F et al. | β | 2025 | β |
| Haploinsufficiency of GRHL2 is associated with orofacial clefting in humans. | Curtis SW et al. | β | 2025 | β |
| Haplotype-resolved, gap-free genome assemblies provide insights into the divergence between Asian and European pears. | Sun M et al. | β | 2025 | β |
| Haplotype-resolved genomics identifies <i>cyp19a1a</i> as a candidate master sex-determining gene in golden trevally (<i>Gnathanodon speciosus</i>). | Fan B et al. | β | 2025 | β |
| hDNApipe: streamlining human genome analysis and interpretation with an intuitive and user-friendly interface. | Zhang Y et al. | β | 2025 | β |
| HELLS is required for maintaining proper DNA modification at human satellite repeats. | Guckelberger P et al. | β | 2025 | β |
| High-density SNP-based linkage map construction and QTL analysis for growth-related traits in <i>Luciobarbus brachycephalus</i> using whole-genome resequencing data. | Wang X et al. | β | 2025 | β |
| Highly dynamic supernumerary mini-chromosomes in a Magnaporthe oryzae strain contributes to cellular variance of genomic content. | Lin G et al. | β | 2025 | β |
| High proportion of tuberculosis recent transmission in rural areas of Northeastern China: a 3-year prospective population-based genotypic and spatial analysis in Hinggan League, China. | Ou X et al. | β | 2025 | β |
| High-resolution detection of copy number alterations in single cells with HiScanner. | Zhao Y et al. | β | 2025 | β |
| High resolution QTL mapping and candidate gene mining for seed oil content and fatty acid composition in soybean. | Zhang S et al. | β | 2025 | β |
| Histone acetyltransferase 1 promotes postinfarction inflammatory response by regulation of monocyte histone succinylation. | Guo Y et al. | β | 2025 | β |
| Homeodomain leucine zipper protein controls the lobed leaf formation by modulating auxin distribution in watermelon. | Zhou Y et al. | β | 2025 | β |
| Host-Adaptive Divergence Shapes the Genetic Architecture of <i>Magnaporthe oryzae</i> in Southern China's Rice Agroecosystems. | Liu X et al. | β | 2025 | β |
| Host range expansion of asexual parasite can be explained by loss of adaptions in Muller's Ratchet. | Tichkule S et al. | β | 2025 | β |
| HSP90 as an evolutionary capacitor drives adaptive eye size reduction via atonal. | Sayed R et al. | β | 2025 | β |
| HTRA1/lncRNA HTRA1-AS1 dominates in age-related macular degeneration reticular pseudodrusen genetic risk with no complement involvement. | Farashi S et al. | β | 2025 | β |
| Human Population Genetic History and Evolutionary Dynamics on the Eastern Tibetan Plateau. | He G et al. | β | 2025 | β |
| Humpback whale genomes reflect the increased efficiency of commercial whaling. | Furni F et al. | β | 2025 | β |
| Hunting for the genetic loci underlying root lodging resistance by BSR-seq and QTL mapping in maize. | Mu X et al. | β | 2025 | β |
| Hybridization Drives Trait Integration in Telomere-To-Telomere Apocynum Genomes. | Xu P et al. | β | 2025 | β |
| Hypoxia ameliorates neurodegeneration and movement disorder in a mouse model of Parkinson's disease. | Marutani E et al. | β | 2025 | β |
| Identification and characterization of a novel powdery mildew resistance gene PmCWI45575 in wild emmer wheat. | Gao H et al. | β | 2025 | β |
| Identification and characterization of <i>Bol.TNL.2,</i> a key clubroot resistance gene from cabbage, in <i>Arabidopsis</i> and <i>Brassica napus</i> L. | Shi Y et al. | β | 2025 | β |
| Identification and characterization of the powdery mildew resistance in a spelt accession Lsy-93. | Sun N et al. | β | 2025 | β |
| Identification and fine-mapping of novel major locus for yellow mosaic disease resistance in Glycine soja. | Bisht A et al. | β | 2025 | β |
| Identification and utilization of a novel large-effect QTL and linked markers for enhancing protein concentration in peanut. | Wang M et al. | β | 2025 | β |
| Identification of a gene conferring broad-spectrum orthotospovirus resistance in Solanaceae. | Liu Y et al. | β | 2025 | β |
| Identification of a novel SACS gene mutation leading to spastic ataxia Charlevoix-Saguenay type: a case report. | Raggio V et al. | β | 2025 | β |
| Identification of a novel SALL4 variant associated with unilateral renal agenesis and right renal pelvis duplication by prenatal exome sequencing: a case report. | Zhao T et al. | β | 2025 | β |
| Identification of candidate gene controlling TSSL via BSA-seq and fine mapping and germplasm innovation in rice. | Dang X et al. | β | 2025 | β |
| Identification of CASKIN2 as a Novel Candidate Gene for MΓΌllerian Duct Anomalies in Humans. | Wang J et al. | β | 2025 | β |
| Identification of Critical Candidate Genes Controlling Monokaryon Fruiting in <i>Flammulina filiformis</i> Using Genetic Population Construction and Bulked Segregant Analysis Sequencing. | Wang P et al. | β | 2025 | β |
| Identification of Differentially Expressed Genes and SNPs Linked to <i>Vibrio mimicus</i> Resistance in Yellow Catfish (<i>Pelteobagrus fulvidraco</i>). | Tong W et al. | β | 2025 | β |
| Identification of Genetic Risk Factors Associated With Herbal and Dietary Supplement-Induced Acute Liver Failure Using Whole Exome Sequencing Analysis. | Liao TJ et al. | β | 2025 | β |
| Identification of InDels in MITF associated with beak color of Duck. | Hua T et al. | β | 2025 | β |
| Identification of key genes for mandibular prognathism in Duolang sheep via genome-wide association analysis. | Fang C et al. | β | 2025 | β |
| Identification of known and novel genetic variants in sensorineural hearing loss: insights from whole exome sequencing in Indian families. | Jagannath K et al. | β | 2025 | β |
| Identification of microbiome-associated loci in super hybrid rice reveals the regulation of OsBRI1 on nitrogen-dependent root microbiome assembly. | Zhang M et al. | β | 2025 | β |
| Identification of multiple genomic alterations and prediction of neoantigens from circulating tumor cells at the single-cell level. | Gao X et al. | β | 2025 | β |
| Identification of pathogenic variants in six Chinese families with keratoconus of autosomal dominant inheritance: pathogenicity analysis and variable phenotype. | Huang X et al. | β | 2025 | β |
| Identification of QTLs for internode length and diameter associated with lodging resistance in rice. | Lin Q et al. | β | 2025 | β |
| Identification of regulatory genes involved in anthocyanin accumulation in radish leaves using bulk segregant analysis. | Pu Q et al. | β | 2025 | β |
| Identification of SNPs and Candidate Genes Associated with Fecundity Trait Using BSA-seq and RNA-seq in Exopalaemon carinicauda. | Wang J et al. | β | 2025 | β |
| Identification of technically challenging variants: Whole-genome sequencing improves diagnostic yield in patients with high clinical suspicion of rare diseases. | Ng HY et al. | β | 2025 | β |
| Identification of the body fluid donors from mixture stains using bulk transcriptomes data. | Yu H et al. | β | 2025 | β |
| Identification of the putative regulatory regions and candidate genes associated with backfat thickness and intramuscular fat content traits in Xiang pigs. | Chen X et al. | β | 2025 | β |
| Identification of therapeutic targets for renal medullary carcinoma via integrated genomic and transcriptomic profiling. | Msaouel P et al. | β | 2025 | β |
| Identification of variants from gene expression data of opioid-addicted patients. | Ajmeriya S et al. | β | 2025 | β |
| Identification of Variants in Four Families With Inherited Eye Disorders by Whole Exome Sequencing. | Jarral A et al. | β | 2025 | β |
| Identifying Genetic Variants in Patients With Cefaclor-Induced Anaphylaxis Using Human Leukocyte Antigen Typing and Whole-Exome Sequencing. | Kim SR et al. | β | 2025 | β |
| Identifying potential genetic biomarkers for sperm dysfunction through whole-genome sequencing. | Khan MR et al. | β | 2025 | β |
| Illuminating the Noncoding Genome in Cancer Using Artificial Intelligence. | Alvarez-Torres MDM et al. | β | 2025 | β |
| Immunologic specificity in glioblastoma: Antigen discovery and translational implications. | Hill CM et al. | β | 2025 | β |
| Improved Sensitivity of Quantitative Polymerase Chain Reaction and Next Generation Sequencing for Detection of Salmonella spp. in Mixed Environmental Communities Using Whole Genome Amplification. | Arfken A et al. | β | 2025 | β |
| Improving variant interpretation and diagnosis in Koolen-de Vries syndrome through a curated genotype-phenotype repository. | Huang H et al. | β | 2025 | β |
| Imputation disparities driven by recent selection and their impact on disease risk estimation in East and Southeast Asian populations. | Li D et al. | β | 2025 | β |
| Increased burden of rare variants in GWAS associated genes in familial multiple sclerosis. | Turk A et al. | β | 2025 | β |
| Independent Mutations in the <i>LRP2</i> Gene Mediating Telescope Eyes and Celestial Eyes in Goldfish. | Li R et al. | β | 2025 | β |
| Indian Himalayan Arabidopsis thaliana population reflects deep history and might be the source of species expansion in the eastern edge. | Singh A et al. | β | 2025 | β |
| Induced somatic mutation accumulation during skeletal muscle regeneration reduces muscle strength. | VrtaΔnik P et al. | β | 2025 | β |
| Inference of human pigmentation from ancient DNA by genotype likelihoods. | Perretti S et al. | β | 2025 | β |
| Influence of pharmacokinetics-related gene polymorphisms on plasma levels of clozapine and its metabolites in Japanese patients with schizophrenia. | Kinoshita S et al. | β | 2025 | β |
| Inhibiting ferroptosis enhances ex vivo expansion of human haematopoietic stem cells. | Della Volpe L et al. | β | 2025 | β |
| Inner-mitochondrial membrane protein PfMPV17 is linked to P. falciparum in vitro resistance to the indoloquinolizidine alkaloid alstonine. | Macdonald JR et al. | β | 2025 | β |
| Insights into the genetic basis of bilateral head asymmetry in a scale-eating cichlid fish. | Tian X et al. | β | 2025 | β |
| Insights into Yersinia pestis evolution through rearrangement analysis of 242 complete genomes. | Wu Y et al. | β | 2025 | β |
| In situ structure of the mouse sperm central apparatus reveals mechanistic insights into asthenozoospermia. | Zhu Y et al. | β | 2025 | β |
| Integrated chloroplast genomics and whole-genome resequencing reveals demographic history and selection signatures of black walnuts. | Ye H et al. | β | 2025 | β |
| Integrated genomic analysis of a diverse maize population reveals novel genes and superior predictive models for ear diameter. | Wu X et al. | β | 2025 | β |
| Integrated genomic analysis of NF1-associated peripheral nerve sheath tumors: an updated biorepository dataset. | Banerjee J et al. | β | 2025 | β |
| Integrated genomic-transcriptomic analysis of clavulanic acid production in differentially productive Streptomyces clavuligerus strains. | Gong J et al. | β | 2025 | β |
| Integrated Multi-Omics Profiling to Characterize Molecular Subtypes and Reveal Potential Therapeutic Strategies for Colorectal Cancer. | Guo X et al. | β | 2025 | β |
| Integrated Multiomics Validation of Key <i>MUC</i> Gene Expression for the Signature Biomarker in the Pakistani Cohort. | Naeem M et al. | β | 2025 | β |
| Integrated phenomic and genomic analyses unveil modes of altered phenotypic plasticity during wheat improvement. | Han L et al. | β | 2025 | β |
| Integrated QTL mapping and candidate gene analysis for yield-related traits and salt tolerance in a rice RIL population. | Zhang Y et al. | β | 2025 | β |
| Integrated transcriptome and BSA-seq analysis identifies a novel QTL for Meloidogyne graminicola resistance in rice HuaHang31. | Yang Z et al. | β | 2025 | β |
| Integrating parental genomes to reduce reference bias and identify intramuscular fat genes in Qinchuan Black pigs. | Lv G et al. | β | 2025 | β |
| Integrating population genomics and environmental data to predict adaptation to climate change in post-bottleneck Tibetan macaques. | Teng Y et al. | β | 2025 | β |
| Integration of genome and transcriptome reveals core genes and allele-specific expression genetic variants associated with immune differentiation of taurine ancestry dairy cattle from indicine ancestry cattle. | Chen Q et al. | β | 2025 | β |
| Integration of germline pharmacogenomic burden to predict fluoropyrimidine-related toxicity - A secondary analysis of the PREPARE trial. | De Mattia E et al. | β | 2025 | β |
| Integrative and accurate annotations enhance current nonsense-mediated mRNA decay rules. | Iha H et al. | β | 2025 | β |
| Integrative Genomics and Multi-Tissue Transcriptomics Identify Key Loci and Pathways for Hypoxia Tolerance in Grass Carp. | Wang W et al. | β | 2025 | β |
| Integrative Genomic, Transcriptomic and Epigenomic Analysis Reveals cis-regulatory Contributions to High-altitude Adaptation in Tibetan Pigs. | Lai D et al. | β | 2025 | β |
| Integrative linkage mapping, GWAS, and RNA-Seq analysis unravel the genetic architecture and candidate genes for drought tolerance in <i>Chrysanthemum</i> interspecific F<sub>1</sub> progeny. | Lu Z et al. | β | 2025 | β |
| Integrative Microbiome-Genetic Analysis Reveals Mechanisms of Fishmeal-Free Feed Adaptability in Large Yellow Croaker (Larimichthys crocea). | Wang G et al. | β | 2025 | β |
| Integrative transcriptomic analysis of Korean high-grade serous ovarian cancer. | Kim H et al. | β | 2025 | β |
| Interplay between large low-recombining regions and pseudo-overdominance in a plant genome. | Salson M et al. | β | 2025 | β |
| Interplay between purging and admixture shapes genetic load in an invasive guppy population | Burda K et al. | β | 2025 | β |
| Interrogating subclonal heterogeneity of liver cancer with single-cell multi-omics analysis. | Zhang L et al. | β | 2025 | β |
| Intragenomic conflict associated with extreme phenotypic plasticity in queen-worker caste determination in honey bees (Apis mellifera). | Bresnahan ST et al. | β | 2025 | β |
| Intrahepatic Microbial Heterogeneity in Multifocal Hepatocellular Carcinoma and Its Association with Host Genomic and Transcriptomic Alterations. | Lu Y et al. | β | 2025 | β |
| Introgression across Narrow Contact Zones Shapes the Genomic Landscape of Phylogenetic Variation in an African Bird Clade. | Rancilhac L et al. | β | 2025 | β |
| Investigating the genetic imprint of long body length, high lean meat rate, high fertility and long gestation period in Danish Landrace pigs. | Chen J et al. | β | 2025 | β |
| Involvement of KEAP1/NRF2 pathway in non-BRAF mutated squamous cell carcinoma of the thyroid. | Schoultz E et al. | β | 2025 | β |
| Isoform characterization of m<sup>6</sup>A in single cells identifies its role in RNA surveillance. | Ren Z et al. | β | 2025 | β |
| KCTD10 is a sensor for co-directional transcription-replication conflicts. | Kloeber JA et al. | β | 2025 | β |
| K-rice: a comprehensive database of Korean rice germplasm variants. | Kim JG et al. | β | 2025 | β |
| Landscape genomics analysis reveals the genetic basis underlying cashmere goats and dairy goats adaptation to frigid environments. | Zhao J et al. | β | 2025 | β |
| Large DNA and protein language models enhance discovery of deleterious mutations in maize. | Wang Y et al. | β | 2025 | β |
| Large-scale dependency and drug screens to characterize the therapeutic vulnerabilities of multiple myeloma with 1q. | Sklavenitis-Pistofidis R et al. | β | 2025 | β |
| Large-scale drug sensitivity, gene dependency, and proteogenomic analyses of telomere maintenance mechanisms in cancer cells. | Wu Y et al. | β | 2025 | β |
| Large-scale genome sequencing reveals population separation and selection signatures in major canyon yaks. | Li Z et al. | β | 2025 | β |
| LCORL and STC2 Variants Increase Body Size and Growth Rate in Cattle and Other Animals. | Bai F et al. | β | 2025 | β |
| Learning a refinement model for variant analysis in non-human primate genomes. | Choi J et al. | β | 2025 | β |
| Lepidopteran Genomes Have Denser Transposable Elements in Smaller Chromosomes, Likely Driven by Non-allelic Homologous Recombination. | An H et al. | β | 2025 | β |
| Leveraging known Pacific colonisation times to test models for the ancestry of Southeast Asians. | Almeida M et al. | β | 2025 | β |
| Leveraging large language models to predict antibiotic resistance in Mycobacterium tuberculosis. | Testagrose C et al. | β | 2025 | β |
| Linkage map construction and QTL mapping for morphological traits in Ipomoea trifida, a diploid sweetpotato relative. | Alves da Mata AP et al. | β | 2025 | β |
| Linking Measures of Inbreeding and Genetic Load to Demographic Histories Across Three Species of Bears. | Clendenin HR et al. | β | 2025 | β |
| Lipoprotein lipase deficiency: heterozygotes match homozygotes in severity. | SzczΔΕniak D et al. | β | 2025 | β |
| LMF1 frameshift deletion in Franches-Montagnes horses with hypertriglyceridemia-induced pancreatitis. | DrΓΆgemΓΌller M et al. | β | 2025 | β |
| Longitudinal pharmacogenomic analysis of refractory lung cancer to identify therapeutic candidates for epidermal growth factor receptor-tyrosine kinase inhibitor resistance subclones. | Yu N et al. | β | 2025 | β |
| Long-read structural variant discovery and targeted short read genotyping enables population scale characterization of structural variation in rhesus macaques. | Ray K et al. | β | 2025 | β |
| Long-term culturing of <i>Pseudomonas aeruginosa</i> in static, minimal nutrient medium results in increased pyocyanin production, reduced biofilm production, and loss of motility. | Cecil RE et al. | β | 2025 | β |
| Long-term evolutionary persistence of a cryptic color polymorphism in frogs. | Goutte S et al. | β | 2025 | β |
| Loss-of-function variants in ciliary genes confer high risk for tetralogy of Fallot. | Zhou Y et al. | β | 2025 | β |
| Loss-of-function variants in DUSP1 encoding dual specificity phosphatase 1 cause palmoplantar keratoderma. | Malovitski K et al. | β | 2025 | β |
| Low-Allele-Frequency Somatic Variants in a Cohort of Sporadic Saccular "Berry" Cerebral Aneurysms. | Karasozen Y et al. | β | 2025 | β |
| <i>Aplf/Dna2</i> variants drive chromosomal fission and accelerate speciation in zokors. | Wan N et al. | β | 2025 | β |
| <i>CpARF6</i> Controls Lobed Leaf Formation in Zucchini. | Jiang S et al. | β | 2025 | β |
| <i>FveTRM5</i> plays a critical role in regulating fruit shape in woodland strawberry. | Zheng Z et al. | β | 2025 | β |
| <i>Plasmodium simium</i>: birth and evolution of a zoonotic malaria parasite species. | de Albuquerque NRM et al. | β | 2025 | β |
| <i>Vibrio cholerae</i> lineage and pangenome diversity vary geographically across Bangladesh over 1 year. | Qin C et al. | β | 2025 | β |
| LYCEUM: learning to call copy number variants on low-coverage ancient genomes. | YΔ±lmaz MA et al. | β | 2025 | β |
| Machine learning driven multi-omics analysis of the genetic mechanisms behind the double-coat fleece formation in Hetian sheep. | Zhang Y et al. | β | 2025 | β |
| Mac-/Lactosylceramide regulates intestinal homeostasis and secretory cell fate commitment by facilitating Notch signaling. | Tang K et al. | β | 2025 | β |
| Macrovascular tumor infiltration and circulating tumor cell cluster dynamics in patients with cancer approaching the end of life. | Newcomer K et al. | β | 2025 | β |
| Mapping and identification of QTLs for low light tolerance traits in grapevine. | Ji X et al. | β | 2025 | β |
| Mapping the regulatory genetic landscape of complex traits using a chicken advanced intercross line. | Zhu X et al. | β | 2025 | β |
| Mapping the transcriptional landscape of algal resistance to viral infection reveals a core expression program. | Shaler TS et al. | β | 2025 | β |
| Maternal mixed UPD3 and a homozygous PLXNA1 c.2497G>C variant in a fetus with severe anomalies. | Ye Y et al. | β | 2025 | β |
| Mechanism of parent-of-origin effects revealed by multi-omic data in euro-chinese hybrid pigs. | Li C et al. | β | 2025 | β |
| Metabolic engineering and adaptive laboratory evolution of Kluyveromyces Marxianus for lactic acid production. | Smets J et al. | β | 2025 | β |
| Methods Established for <i>EPSPS</i> Gene Mutation Detection in Glyphosate-Resistant Rice (<i>Oryza sativa</i> L.). | Chen X et al. | β | 2025 | β |
| Mining SNP loci and candidate genes for sheath blight resistance in <i>Indica</i> rice using genome-wide association studies. | Gu X et al. | β | 2025 | β |
| Mitochondrial candidate gene, <i>orf206</i>, for cytoplasmic male sterility in Pear (<i>Pyrus pyrifolia</i>). | Han H et al. | β | 2025 | β |
| Mitochondrial haplogroup A2 is associated with increased COVID-19 mortality in an admixed Brazilian population. | Tavares GM et al. | β | 2025 | β |
| Mitochondrial haplogroup M contributes to asthma risk in the Kuwaiti population. | Dashti M et al. | β | 2025 | β |
| Mitogenomic Alterations in Breast Cancer: Identification of Potential Biomarkers of Risk and Prognosis. | PΓ©rez-Amado CJ et al. | β | 2025 | β |
| MKDESIGNER and TASEQ: a set of tools for plant genotyping by targeted amplicon sequencing. | Chigira K et al. | β | 2025 | β |
| Molecular and genetic evidence for the role of AMBRA1 in suppressing S-phase entry and tumorigenesis. | Akatsuka H et al. | β | 2025 | β |
| Molecular Characterization of Oral Squamous Cell Carcinoma in Mexican Patients: A Genomic and Epidemiological Overview. | Lopez-Gomez J et al. | β | 2025 | β |
| Monitoring ctDNA in aggressive B-cell lymphoma: a prospective correlative study of ctDNA kinetics and PET-CT metrics. | Vimalathas G et al. | β | 2025 | β |
| Monitoring the rate and variability of somatic genomic alterations using long-read sequencing. | Chen X et al. | β | 2025 | β |
| mop1 affects maize recombination landscapes by modulating methylation of MITEs near genes in open chromatin. | Hasan MM et al. | β | 2025 | β |
| Morula complementation restores male germline in <i>NANOS2</i> null sheep. | McLean ZL et al. | β | 2025 | β |
| MOV&RSim: computational modelling of cancer-specific variants and sequencing reads characteristics for realistic tumoral sample simulation. | Longhin F et al. | β | 2025 | β |
| MTBseq-nf: Enabling Scalable Tuberculosis Genomics "Big Data" Analysis Through a User-Friendly Nextflow Wrapper for MTBseq Pipeline. | Sharma A et al. | β | 2025 | β |
| Multiclonal Profiling of FLT3-ITD in AML Using MinION Sequencing: A Tailored Clustering Approach to Enhance Subclonal Detection. | MartΓnez-Serra J et al. | β | 2025 | β |
| Multi-dimensional annotation of porcine variants using genomic and epigenomic features in pigs. | Yin H et al. | β | 2025 | β |
| Multifaceted disruption of AMPA receptor signaling by <i>CACNG8</i> variants: Integrated evidence from human genetics and molecular simulation. | Alibrandi S et al. | β | 2025 | β |
| Multi-locus genome-wide association studies reveal genomic regions associated with sodicity tolerance in rice. | Akilan M et al. | β | 2025 | β |
| Multimodal Integration of Genomic Data Reveals Regulatory Mechanisms at the Polycystic Ovary Syndrome (PCOS)-Associated 12q13.2 Locus. | Harris RA et al. | β | 2025 | β |
| Multiomic Characterization of Pre- and Post-Neoadjuvant Chemotherapy-Treated Ovarian Cancer Reveals Mediators of Tumorigenesis and Chemotherapy Response. | Valentine MC et al. | β | 2025 | β |
| Multiomic integration reveals subtype-specific predictors of neoadjuvant treatment response in breast cancer. | Mo Z et al. | β | 2025 | β |
| Multi-omics analysis reveals the attenuation of the interferon pathway as a driver of chemo-refractory ovarian cancer. | Afenteva D et al. | β | 2025 | β |
| Multi-omics Characterization of Acquired Olaparib Resistance in BRCA1 and BRCA2 Mutant Breast Cancer Cell Lines. | Anagho-Mattanovich HA et al. | β | 2025 | β |
| Multiple Autopolyploid Arabidopsis lyrata Populations Stabilized by Long-Range Adaptive Introgression Across Eurasia. | Scott AD et al. | β | 2025 | β |
| Multiplexed, universal probe-based rare variant detection with USE-PCR. | Alvarado J et al. | β | 2025 | β |
| Multiregional single-cell transcriptomics reveals an association between partial EMT and immunosuppressive states in oral squamous cell carcinoma. | Kim S et al. | β | 2025 | β |
| Multi-trait GWAS for growth under contrasting thermal rearing conditions in rainbow trout (Oncorhynchus mykiss). | Gallardo-Hidalgo J et al. | β | 2025 | β |
| Multivariate Effects of SNPs on Environmental Streptococcal Mastitis Evaluated With an NGS-Based Association Study Using Targeted Resequencing in the Bovine MHC Region. | Nagata F et al. | β | 2025 | β |
| MutAnt: mutation annotation tool predicts deleteriousness of missense mutations and improves mutation calling from transcriptomics. | Sarachakov A et al. | β | 2025 | β |
| Mutation profile and chromosomal abnormality in adenomyosis. | Suda K et al. | β | 2025 | β |
| Mutations in CREBBP and EP300 HAT and Bromo Domains Drive Hypermutation and Predict Survival in GI Cancers Treated with Immunotherapy. | Gusakova M et al. | β | 2025 | β |
| Mutations of the complex I PSST target gene confers acaricide resistance and a fitness cost in Panonychus citri. | Pan D et al. | β | 2025 | β |
| Mutations of two AhTT8 genes reduce the accumulation of anthocyanins and confer the white testa of peanut (Arachis hypogaea L.). | Zi H et al. | β | 2025 | β |
| Nanobioreactor detection of space-associated hematopoietic stem and progenitor cell aging. | Pham J et al. | β | 2025 | β |
| Nanomaterial isolated extracellular vesicles enable high precision identification of tumor biomarkers for pancreatic cancer liquid biopsy. | Greenberg ZF et al. | β | 2025 | β |
| Natural variants of <i>AGL80.5</i> and <i>FPA.3</i> contribute to bud break timing in poplar by controlling auxin biosynthesis. | Li L et al. | β | 2025 | β |
| Natural variation in CHELATASE SUBUNIT I-A increases grain weight and enhances wheat yield. | Wei B et al. | β | 2025 | β |
| Navigating the genetic basis of cadmium accumulation: a comprehensive analysis of low-cadmium accumulation rice. | Shao D et al. | β | 2025 | β |
| Near complete assembly of Drosophila melanogaster Canton S strain genome. | Liu YN et al. | β | 2025 | β |
| Neurodevelopment Genes Encoding Olduvai Domains Link Myalgic Encephalomyelitis to Neuropsychiatric Disorders. | Arcos-Burgos M et al. | β | 2025 | β |
| New insights into genetic architecture of Guangxi indigenous chickens using whole-genome sequencing. | Yang Z et al. | β | 2025 | β |
| New T2T assembly of Cryptosporidium parvum IOWA II annotated with Legacy-Compatible Gene identifiers. | Baptista RP et al. | β | 2025 | β |
| Next generation sequencing analysis reveals complex genetic architecture of childhood-onset systemic lupus erythematosus. | Lewandowski L et al. | β | 2025 | β |
| Next-Generation Sequencing: A Review of Its Transformative Impact on Cancer Diagnosis, Treatment, and Resistance Management. | Isaic A et al. | β | 2025 | β |
| NGS Approaches in Clinical Diagnostics: From Workflow to Disease-Specific Applications. | Brancato D et al. | β | 2025 | β |
| Novel CTNNB1 gene mutations reveal critical pathogenic mechanisms in pediatric hepatoblastoma. | Kumar S et al. | β | 2025 | β |
| Novel estrogen-related gene variants identified by whole-exome sequencing in pregnancy-associated intrahepatic cholestasis. | Lai H et al. | β | 2025 | β |
| Novel Grm6 Variant in a no b-wave (nob) Mouse Model: Phenotype Characterization and Gene Therapy. | Lin PH et al. | β | 2025 | β |
| Novel <i>KIAA0825</i> Variants Underlie Nonsyndromic Postaxial Polydactyly. | Abdullah et al. | β | 2025 | β |
| Novel NUDCD1 gene variant predisposes to severe COVID-19 disease in Asians through modulation of antiviral DHX15- and MAVS-mediated signalling. | Anusha Amali A et al. | β | 2025 | β |
| Novel perpetual genetic population development and genome assembly of superior maize inbred lines provide insights into genetic improvement. | Xue Y et al. | β | 2025 | β |
| Novel Resistance Mechanisms to Second-Generation EGFR Tyrosine Kinase Inhibitor Afatinib and Associations With Genomic Features in NSCLC. | Lin F et al. | β | 2025 | β |
| Novel zoonotic cases of Plasmodium simium from SΓ£o Paulo with a reference genome of the Brazilian strain. | Manko E et al. | β | 2025 | β |
| NXT2 is a key component of the RNA nuclear export factor complex in the human testis and essential for spermatogenesis. | Dicke AK et al. | β | 2025 | β |
| OmniNeo: a multi-omics pipeline incorporating proteomics and AI selection for neoantigen optimization in tumor immunotherapy. | Lu M et al. | β | 2025 | β |
| Oncogenic pathway landscape of ovarian cancer and correlation with clinical prognosis. | Lee YJ et al. | β | 2025 | β |
| Ophthalmological findings in Brazilian Cornelia de Lange syndrome patients with NIPBL variants. | Vilella T et al. | β | 2025 | β |
| OsnTNB.11 Encodes a CC-NBS-LRR Type Resistance Protein that Positively Regulates Resistance to Rice Kernel Smut by Modulating the Ethylene Signalling. | Shu X et al. | β | 2025 | β |
| Overcoming limitations to customize DeepVariant for domesticated animals with TrioTrain. | Kalleberg J et al. | β | 2025 | β |
| Oxidative stress accelerates repeat sequence instability and base substitutions promoting gastrointestinal driver mutations in MSH2 deficient mice. | Ohno M et al. | β | 2025 | β |
| Pangenome analysis of transposable element insertion polymorphisms reveals features underlying cold tolerance in rice. | Qian Y et al. | β | 2025 | β |
| Pangenome analysis provides insights into legume evolution and breeding. | Wang L et al. | β | 2025 | β |
| Pangenomic and Phenotypic Characterization of Colombian <i>Capsicum</i> Germplasm Reveals the Genetic Basis of Fruit Quality Traits. | Vega-MuΓ±oz MA et al. | β | 2025 | β |
| Parallel evolution of salinity tolerance in <i>Arabidopsis thaliana</i> accessions from Cape Verde Islands. | MartΓnez Rivas FJ et al. | β | 2025 | β |
| Parental and cell-division origin analysis to reduce false-positives in mosaic embryos for preimplantation genetic testing. | Zhang Q et al. | β | 2025 | β |
| Pathogenic variants in DLGAP5 cause female infertility characterized by oocyte maturation arrest and embryonic arrest. | Qu R et al. | β | 2025 | β |
| Patterns and Functional Insights of DNA Methylation Variation in a South American Mayfly Across an Agriculturally Impacted Semi-Arid Watershed. | Bertin A et al. | β | 2025 | β |
| Performance comparison of germline variant calling tools in sporadic disease cohorts. | Song Q et al. | β | 2025 | β |
| Persistence of SARS-CoV-2-IgG antibody durability in convalescent COVID-19 patients 6β―months after the natural infection. | Hua Q et al. | β | 2025 | β |
| Personalized ctDNA monitoring in metastatic HR+/HER2- breast cancer patients during endocrine and CDK4/6 inhibitor therapy. | Fuentes-AntrΓ‘s J et al. | β | 2025 | β |
| Pharmacogenomic analysis of low-density lipoprotein receptor 3' untranslated region genetic variants influencing rosuvastatin efficacy in Chinese dyslipidemia patients. | Wang K et al. | β | 2025 | β |
| Phased chromosome-level assembly provides insight into the genome architecture of hexaploid sweetpotato. | Wu S et al. | β | 2025 | β |
| Phase II basket trial of Dual Anti-CTLA-4 and anti-PD-1 blockade in Rare Tumors (DART) SWOG S1609: pancreatic neuroendocrine neoplasm (PNEN) cohort. | Patel SP et al. | β | 2025 | β |
| Phenotype-genotype correlation of patients with congenital cataracts and hair anomalies. | Wang Q et al. | β | 2025 | β |
| Phenotypic and genomic characterization of azole resistance in Portuguese <i>Candida parapsilosis</i> isolates. | Papuc AM et al. | β | 2025 | β |
| Phenotypic pleiotropy of missense variants in human B cell confinement receptor P2RY8. | LaFlam TN et al. | β | 2025 | β |
| Phenotypic, transcriptomic, and genomic analyses reveal the spatiotemporal patterns and associated genes of coarse hair density in goats. | Zhang JP et al. | β | 2025 | β |
| Phylogenomic insights into LA-MRSA from Argentine pig farm environments: novel <i>OptrA</i> variant and regional emergence of an ST9 lineage co-circulating with international CC398 lineages. | GonzΓ‘lez MJ et al. | β | 2025 | β |
| PICALM Alzheimer's risk allele causes aberrant lipid droplets in microglia. | Kozlova A et al. | β | 2025 | β |
| Plastome diversity and phylogenetic insights among modern Egyptian wheat cultivars: Genome-Wide and Gene-Level perspectives. | Al-Andal A | β | 2025 | β |
| Population Genetics of <i>Sillago japonica</i> Among Five Populations Based on Mitochondrial Genome Sequences. | Zhu B et al. | β | 2025 | β |
| Population Genomic Analysis of Two Independent Clonal Invasions of the Sudden Oak Death Pathogen into One Forest. | Cauldron NC et al. | β | 2025 | β |
| Population Genomic Analysis Provides Insights Into the Evolution and Conservation of Two Critically Endangered Musk Deer Species. | Chen G et al. | β | 2025 | β |
| Population genomic landscapes and insights for conservation of the critically endangered island-endemic Chinese pangolin in Taiwan. | Zhai T et al. | β | 2025 | β |
| Population Genomics Informs Resilience and Vulnerability of Habitat-Building Coralline Algae. | Jenkins TL et al. | β | 2025 | β |
| Population Genomics Provides Insights Into Genomic Features of Inbreeding Depression in <i>Arma Chinensis</i>. | Li B et al. | β | 2025 | β |
| Population Genomics Provides Novel Insights Into Evolutionary Relationships and Local Adaptation of Two Ecotypes <i>Coilia nasus</i>. | Ma F et al. | β | 2025 | β |
| Population genomics reveal multiple independent origins of pesticide resistance in the polyphagous pest, Tetranychus urticae. | Chen L et al. | β | 2025 | β |
| Population Genomic Survey of <i>Hypophthalmichthys molitrix</i> in the Yangtze River Basin: A RAD Sequencing Perspective. | Li W et al. | β | 2025 | β |
| Population structure in a fungal human pathogen is potentially linked to pathogenicity. | Hatmaker EA et al. | β | 2025 | β |
| Posttransplantation clonal dynamics of hematopoietic stem cells carrying prenatal and early-life <i>DNMT3A</i> mutations. | Derks LLM et al. | β | 2025 | β |
| Potential risk of dipterocarps in the marginal Asian rainforests: low population size and high genomic erosion. | Zhu XL et al. | β | 2025 | β |
| Precision-edited histone tails disrupt polycistronic gene expression controls in trypanosomes. | NovotnΓ‘ M et al. | β | 2025 | β |
| Predicting expression-altering promoter mutations with deep learning. | Jaganathan K et al. | β | 2025 | β |
| Predicting the methylation status of CpG islands from read distribution biases. | Abdullaev ET et al. | β | 2025 | β |
| Prediction of antimicrobial resistance in <i>Staphylococcus aureus</i> with a machine learning classifier based on WGS data. | Liu Y et al. | β | 2025 | β |
| Prematurity and genetic liability for autism spectrum disorder. | Zhang Y et al. | β | 2025 | β |
| Prenatal diagnosis of Prader-Willi syndrome via maternal UPD15 with placental mosaicism: incidental discovery of fetal DMD carrier status. | Ye Y et al. | β | 2025 | β |
| Prenatal diagnosis of rare genetic disorders: fourteen years' experience of a tertiary genetic centre from India. | Sheth J et al. | β | 2025 | β |
| Prevalence and therapeutic response of EGFR T790I mutation in NSCLC patients with acquired resistance to EGFR-TKIs: a retrospective cohort study. | Shi J et al. | β | 2025 | β |
| Prioritized SNP Selection from Whole-Genome Sequencing Improves Genomic Prediction Accuracy in Sturgeons Using Linear and Machine Learning Models. | Song H et al. | β | 2025 | β |
| Proteogenomic characterization unveils biomarkers associated with chemoresistance in muscle-invasive bladder cancer. | Holt MV et al. | β | 2025 | β |
| qcCHIP: an R package to identify clonal hematopoiesis variants using cohort-specific data characteristics. | Liu X et al. | β | 2025 | β |
| qPH<sub>1.01</sub>, a dominant QTL that contributes to plant height and ear height in maize. | Chen C et al. | β | 2025 | β |
| QTL identification and characterization of the recombination landscape of the mountain pine beetle (Dendroctonus ponderosae). | Pushman C et al. | β | 2025 | β |
| QTL mapping and candidate gene identification of the full flowering date trait in olive trees (Olea Europaea L.). | Lamoumni O et al. | β | 2025 | β |
| Quantifying Early-Stage Lung Adenocarcinoma Progression with a Radiomic Trajectory. | Qiu ZB et al. | β | 2025 | β |
| Quantitative temporal analysis of pancreatic islet T lymphocyte and macrophage infiltration heralded by serum IgE in congenic BioBreeding (BB) Gimap5<sup>-</sup>/<sup>-</sup> rats at risk for insulitis and acute onset diabetes. | JΓΆnsson J et al. | β | 2025 | β |
| Range extension and re-assessment of <i>Eugenia stirpiflora</i> (O.Berg) Krug & Urb., an endemic Myrtaceae to the Virgin Islands. | BΓ‘rrios S et al. | β | 2025 | β |
| Rapid adaptation to a globally introduced virulent pathogen in a keystone species. | Cassin-Sackett L et al. | β | 2025 | β |
| Rapid and minimally invasive preimplantation genetic testing for aneuploidies (PGT-A) based on polar body and nanopore sequencing: a viable alternative to conventional trophectoderm-based PGT-A? | Song D et al. | β | 2025 | β |
| Rare <i>PANK2</i> variants and pantothenate-kinase-associated neurodegeneration in the Dominican Republic. | Vardarajan BN et al. | β | 2025 | β |
| Rare recombination in Salix nivalis and the maintenance of homomorphic sex chromosomes in willows. | Khanal A et al. | β | 2025 | β |
| Rare variants in MIR184 are a novel genetic cause of Fuchs endothelial corneal dystrophy. | Abreu Costa M et al. | β | 2025 | β |
| Rare variants in PRKCI cause Van der Woude syndrome and other features of peridermopathy. | Robinson K et al. | β | 2025 | β |
| rDNAcaller: a fast and robust pipeline to call ribosomal DNA variants. | Ramirez JM et al. | β | 2025 | β |
| RECAP-seq: restriction enzyme-based CpG-methylated fragment amplification for early cancer detection. | Shin D et al. | β | 2025 | β |
| Recombination Rate and Recurrent Linked Selection Shape Correlated Genomic Landscapes Across a Continuum of Divergence in Swallows. | Schield DR et al. | β | 2025 | β |
| Recommendations for bioinformatics in clinical practice. | Lavrichenko K et al. | β | 2025 | β |
| Reference genome and population genomic analyses reveal insight into herbicide tolerance in Avena fatua L. | Liu J et al. | β | 2025 | β |
| Refined Procedure to Purify and Sequence Circulating Cell-Free DNA in Prostate Cancer. | Rahimirad S et al. | β | 2025 | β |
| Relaxation of selective constraint on the sweet-taste receptor gene TAS1R2 in lorisiform primates. | Ji Q et al. | β | 2025 | β |
| Reliable on-treatment prognostication and target identification with a customized assay for circulating tumor DNA in patients with newly diagnosed pancreatic cancer. | Petersson A et al. | β | 2025 | β |
| Reshaping epigenomic landscapes facilitated bread wheat speciation. | Zhang Z et al. | β | 2025 | β |
| Resource: A compendium of HLA types and expression in pediatric cancer models. | Guan Y et al. | β | 2025 | β |
| Revealing the genetic basis of coat color in Tibetan sheep through selective sweep and transcriptomic analyses. | Li X et al. | β | 2025 | β |
| Risk Assessment With Ultra-Low-Pass Whole-Genome Sequencing of Cell-Free DNA for Large B-Cell Lymphoma. | Zhao D et al. | β | 2025 | β |
| RNA-Seq-based transcriptomics reveals differential gene expression between two Pisum sativum subspecies and uncovers their molecular marker profiles. | Tekle K et al. | β | 2025 | β |
| RnaXtract, a tool for extracting gene expression, variants, and cell-type composition from bulk RNA sequencing. | Bouirdene SG et al. | β | 2025 | β |
| Salt tolerance characterization and genome-wide association study of <i>Gossypium barbadense</i> accessions reveal salinity-adaptive variations. | Li H et al. | β | 2025 | β |
| Saturating the eQTL map in Drosophila: Genome-wide patterns of cis and trans regulation of transcriptional variation in outbred populations. | Pallares LF et al. | β | 2025 | β |
| Saving the locals: a conservation genomics approach to the endangered Spanish Toothcarp, Aphanius iberus (Valenciennes, 1846). | Estarellas M et al. | β | 2025 | β |
| SbC1, an R2R3-MYB transcription factor, specifically regulates anthocyanin accumulation in sorghum coleoptiles. | Ding Y et al. | β | 2025 | β |
| Scaling for African Inclusion in High-Throughput Whole Cancer Genome Bioinformatic Workflows. | Jiang J et al. | β | 2025 | β |
| ScisTree2 enables large-scale inference of cell lineage trees and genotype calling using efficient local search. | Zhang H et al. | β | 2025 | β |
| SCOPE-C reveals long-range enhancer networks emerging as key regulators during human cortical neurogenesis. | Jia L et al. | β | 2025 | β |
| Self-amplifying NRF2-EZH2 epigenetic loop converts KRAS-initiated progenitors to invasive pancreatic cancer. | Antonucci L et al. | β | 2025 | β |
| Senescence-associated alterations in histone H3 modifications, HP1 alpha levels and distribution, and in the transcriptome of vascular smooth muscle cells in different types of senescence. | Gadecka A et al. | β | 2025 | β |
| Sex Differences in the Genetic Causes of Dilated Cardiomyopathy. | Mangino M et al. | β | 2025 | β |
| Sheltered load in fungal mating-type chromosomes revealed by fitness experiments. | Guyot L et al. | β | 2025 | β |
| Short Inverted Repeats as Mutational Hotspots and Putative Drivers of Genome Instability in Osteosarcoma. | Li M et al. | β | 2025 | β |
| Signatures in domesticated beet genomes pointing at genes under selection in a sucrose-storing root crop. | Dhiman AS et al. | β | 2025 | β |
| Single-cell and spatial transcriptomic characterization of pulmonary pleomorphic carcinoma. | Matsuoka A et al. | β | 2025 | β |
| Single-cell and spatial transcriptomics reveal intratumor heterogeneity and immune evasion in natural killer/T cell lymphoma. | Ma S et al. | β | 2025 | β |
| Single-cell transcriptomics reveals biomarker heterogeneity linked to CDK4/6 Inhibitor resistance in breast cancer cell lines. | Migliaccio I et al. | β | 2025 | β |
| Single Nucleotide Polymorphisms, Structural Variants, and Short Tandem Repeats Capture Distinct Signals of Adaptive Divergence in the Atlantic Puffin. | Kersten O et al. | β | 2025 | β |
| Sintilimab plus chemotherapy for first-line treatment of advanced pulmonary lymphoepithelioma-like carcinoma: Phase 2 trial. | Lin X et al. | β | 2025 | β |
| SLUR(M)-py: a SLURM powered Pythonic pipeline for parallel processing of 3D (Epi)genomic profiles. | Roth C et al. | β | 2025 | β |
| Somatic Mutations in DNA Mismatch Repair Genes, Mutation Rate and Neoantigen Load in Acute Lymphoblastic Leukemia. | Mendiola-Soto DK et al. | β | 2025 | β |
| Somatic reversion in CD137 deficiency correlating with Epstein-Barr virus control and clinical improvement. | Batlle-MasΓ³ L et al. | β | 2025 | β |
| Spatial and genomic profiling of residual breast cancer after neoadjuvant chemotherapy unveil divergent fates for each breast cancer subtype. | Seo ES et al. | β | 2025 | β |
| Species Limits and Hybridization in Andean Leaf-Eared Mice (<i>Phyllotis</i>). | Quiroga-Carmona M et al. | β | 2025 | β |
| Spina bifida, diplomyelia, and Chiari-like malformation in an Aberdeen Angus calf. | Korte A et al. | β | 2025 | β |
| Streptomyces venezuelae uses secreted chitinases and a designated ABC transporter to support the competitive saprophytic catabolism of chitin. | van der Meij A et al. | β | 2025 | β |
| Sudden cardiac death in young: A cardiac-focused autopsy and molecular study to identify the cause. | Arava S et al. | β | 2025 | β |
| SURROGATE SELECTION OVERSAMPLES EXPANDED T CELL CLONOTYPES. | Yu P et al. | β | 2025 | β |
| Switch From Soil to Plant Host Lifestyle Is Mediated by rpoS Mutations in Bacterial Endophyte. | Alsharif W et al. | β | 2025 | β |
| Systematically identification of survival-associated eQTLs in a Japanese kidney cancer cohort. | Song X et al. | β | 2025 | β |
| Systematic enhancer mapping and functional analysis in zebrafish with optimized CRISPR interference. | Chan J et al. | β | 2025 | β |
| Systematic evaluation of de novo mutation calling tools using whole genome sequencing data. | Shah A et al. | β | 2025 | β |
| Systematic profiling reveals hepatic immune and metabolic dysregulation in DNASE1L3-deficient mice. | Lei L et al. | β | 2025 | β |
| T2T-CHM13 improves read mapping and detection of clinically relevant genetic variation in the Swedish population. | Schmitz D et al. | β | 2025 | β |
| Targeting high-risk MYC-overexpressed osteosarcoma with an Aurora kinase inhibitor:--results from a pilot umbrella trial. | Tian K et al. | β | 2025 | β |
| Targeting tumoral heterogeneity in lung cancer: a novel, CT-texture-guided targeted biopsy approach with exome sequencing. | Hertel A et al. | β | 2025 | β |
| TEA5K: a high-resolution and liquid-phase multiple-SNP array for molecular breeding in tea plant. | Liu D et al. | β | 2025 | β |
| Teasing apart the sources of phylogenetic tree discordance across three genomes in the oak family (Fagaceae). | Shen Z et al. | β | 2025 | β |
| Telomere-to-telomere genome assembly uncovers Wolbachia-driven recurrent male bottleneck effect and selection in a sawfly. | Zhang M et al. | β | 2025 | β |
| That's So Last Season: Unraveling the Genomic Consequences of Fur Farming in Arctic Foxes (Vulpes lagopus). | Cockerill CA et al. | β | 2025 | β |
| The Complex Etiology of Epilepsy: Genetic Analysis and HLA Association in Patients in the Middle East. | Fadda A et al. | β | 2025 | β |
| The Consortium for Genomic Diversity, Ancestry, and Health in Colombia (CΓDIGO): building local capacity in genomics and bioinformatics. | MariΓ±o-RamΓrez L et al. | β | 2025 | β |
| The cytonuclear interactions during grapevine domestication. | Hou T et al. | β | 2025 | β |
| The Deep Mining Era: Genomic, Metabolomic, and Integrative Approaches to Microbial Natural Products from 2018 to 2024. | Wang Z et al. | β | 2025 | β |
| The dispersal of domestic cats from North Africa to Europe around 2000 years ago. | De Martino M et al. | β | 2025 | β |
| The dynamic epigenetic atlas and its effects on instability of starch and seed storage protein quality traits in wheat (<i>Triticum aestivum</i> L.). | Wang Y et al. | β | 2025 | β |
| The editable landscape of the yeast genome reveals hotspots of structural variant formation. | Li S et al. | β | 2025 | β |
| The fetal hydrops-associated single-residue mutation L322P disrupts mechanical but not chemical activation of the PIEZO1 ion channel. | Jiang J et al. | β | 2025 | β |
| The first case of Branchio-oto-renal (BOR) syndrome caused by a deep intronic variant in EYA1. | Lorans M et al. | β | 2025 | β |
| The genetic influence of sex on gene expression for blood in pigs. | Lin Q et al. | β | 2025 | β |
| The genetic polymorphism of XPR1 associated with Fanconi syndrome in Chinese patients with X-linked hypophosphatemia. | Han S et al. | β | 2025 | β |
| The Genomic Basis of the Svalbard Reindeer's Adaptation to an Extreme Arctic Environment. | Dussex N et al. | β | 2025 | β |
| The impact of bioinformatic choices on <i>Coccidioides</i> variant identification accuracy. | Marchetti M et al. | β | 2025 | β |
| The microevolutionary trajectory of endemic multidrug-resistant tuberculosis strains in Portugal toward increased drug resistance levels and its clinical significance. | Gomes P et al. | β | 2025 | β |
| The molecular cartography of malignant and benign sebaceous tumours. | Ferreira I et al. | β | 2025 | β |
| The negligible mutagenic effects of norfloxacin on the genome of the fission yeast <i>Schizosaccharomyces pombe</i> ATCC-16979. | Lin T et al. | β | 2025 | β |
| The neuronal chromatin landscape in brains from individuals with schizophrenia is linked to early fetal development. | Girdhar K et al. | β | 2025 | β |
| The origin and evolution of cultivated rice and genomic signatures of heterosis for yield traits in super-hybrid rice. | Zhao Y et al. | β | 2025 | β |
| The origin of modern North Africans as depicted by a massive survey of mitogenomes. | Colombo G et al. | β | 2025 | β |
| The origin patterns, admixture, and selection signatures of the global gamecock populations. | Ren X et al. | β | 2025 | β |
| The pomegranate (Punica granatum L. cv. 'Wonderful') genome and P. protopunica shed light on pomegranate domestication. Is Daru a wild stock? | Slonimsky A et al. | β | 2025 | β |
| The Potential Role of Haploblocks in the Persistence of Small, Isolated Populations of Brook Trout (<i>Salvelinus fontinalis</i>). | Nemeczek CM et al. | β | 2025 | β |
| The proteogenomic landscape of the human kidney and implications for cardio-kidney-metabolic health. | Hirohama D et al. | β | 2025 | β |
| The role of holobiont composition and environmental history in thermotolerance of Tropical Eastern Pacific corals. | Glynn VM et al. | β | 2025 | β |
| Tissue-specific expression and functional role of keratin 1 in sheep horn development. | Mei Q et al. | β | 2025 | β |
| Tissue-Specific Genomic Evolution Despite Shared MED12 Mutations in Benign Tumors. | Namkung J et al. | β | 2025 | β |
| Tracing the global spread of maize (Zea mays L.) through plastome analysis of landraces. | Park JS et al. | β | 2025 | β |
| Transcriptional profiling directs the classification of acute leukemias of ambiguous lineage into AML, B-ALL, or T-ALL. | Mulet-Lazaro R et al. | β | 2025 | β |
| Transcription Factor LjWRKY50 Affects Jasmonate-Regulated Floral Bud Duration in <i>Lonicera japonica</i>. | Li Y et al. | β | 2025 | β |
| Transcriptome Dynamics and Regulatory Networks of Postnatal Muscle Development in Leizhou Black Goats. | Han J et al. | β | 2025 | β |
| Transcriptomic Characterization of North Queensland Hepatocellular Carcinoma. | Gillman R et al. | β | 2025 | β |
| Transcriptomic Profiling of mRNA and lncRNA During the Developmental Transition from Spores to Mycelia in <i>Penicillium digitatum</i>. | Zhou T et al. | β | 2025 | β |
| Transcriptomic reveals key genes and regulatory pathways in galactomannan biosynthesis in <i>Gleditsia sinensis</i> polysaccharide gum. | Zhang Y et al. | β | 2025 | β |
| Transposable Element-Mediated Cis-Regulation Drives the Evolution of dmrt1 as a Candidate Master Sex-Determining Gene in Black Carp. | Guo J et al. | β | 2025 | β |
| Transposable elements and heterochromatic regions are enriched for structural variation and sequence divergence in the genome of wild-type Caenorhabditis elegans. | Bush ZD et al. | β | 2025 | β |
| Trastuzumab and pertuzumab plus carboplatin-based neoadjuvant therapy for HER2-positive breast cancer: a prospective cohort study with integrated genomic and transcriptomic biomarker analysis. | Qian X et al. | β | 2025 | β |
| TSC angiofibroma and ungual fibroma have different mutation signatures, with recurrent mutations in KMT2C. | Klonowska K et al. | β | 2025 | β |
| Tumor evolution and immune microenvironment dynamics in primary and relapsed mantle cell lymphoma. | Wan H et al. | β | 2025 | β |
| Tumor-Informed ctDNA in Guiding First-Line Immunochemotherapy in Advanced Non-Small Cell Lung Cancers. | Fei K et al. | β | 2025 | β |
| Tumor microenvironment-preserving gliosarcoma organoids as an in vitro preclinical platform: a comparative analysis with glioblastoma models. | Park J et al. | β | 2025 | β |
| Two genes, one culprit - a functional candidate validation of a SPATA7 deletion in dogs with day blindness/retinal degeneration. | Murgiano L et al. | β | 2025 | β |
| Two mutations in the same MYC-bHLH transcription factor cause segregation of purple coloration of stolons and seed heads in <i>Zoysia japonica</i>βΓβ<i>Zoysia matrella</i> F<sub>2</sub> and F<sub>1</sub> populations. | Pradhan S et al. | β | 2025 | β |
| Two nuclear loci Rf-m1 and Rf-m2 interplay to determine the fertility restoring efficacy of ZD-type CMS soybean. | Yu X et al. | β | 2025 | β |
| Two pairs of CACNA1I (CaV3.3) variants with opposite effects on channel function cause neurodevelopmental disorders of varying severity. | El Ghaleb Y et al. | β | 2025 | β |
| UCP3 gene variants and obesity in a Pakistani sample population. | Bhatti AA et al. | β | 2025 | β |
| Ultra-mild bisulfite outperforms existing methods for 5-methylcytosine detection with low input DNA. | Dai Q et al. | β | 2025 | β |
| Uncovering the genetic landscape of soybean accessions from Kazakhstan in comparison with global germplasm using whole genome resequencing. | Zatybekov A et al. | β | 2025 | β |
| Understanding Callus Types in Maize by Genetic Mapping and Transcriptional Profiling. | Lin G et al. | β | 2025 | β |
| Understanding genetic architecture overcomes tradeoffs between seed quality and insect resistance. | White JR et al. | β | 2025 | β |
| Unraveling genetic diversity and population structure of pineapple germplasm using genome-wide SNP markers. | Lyu H et al. | β | 2025 | β |
| Unraveling the genetic basis of maize ear diameter in a multi-parent RIL population derived from tropical and temperate germplasms. | Yang X et al. | β | 2025 | β |
| Unraveling the genetic diversity and adaptive traits of laboratory pig breeds within the perspective of whole - genome resequencing. | Yuan H et al. | β | 2025 | β |
| Unveiling population structure in South Pacific albacore: insights from genetics and growth. | Lu D et al. | β | 2025 | β |
| Using Whole-Genome Sequencing Data Reveals the Population Structure and Selection Signatures for Reproduction Traits in Duolang Sheep. | Wang K et al. | β | 2025 | β |
| Validation of the NovaSeq6000 platform and automated library preparation for CE-IVD equivalence. | Pasquinelli E et al. | β | 2025 | β |
| Varaps: a python package for estimating SARS-CoV-2 lineages proportions from pooled sequencing data (ANRS0160). | Djaout EH et al. | β | 2025 | β |
| Variant scoring tools for deep mutational scanning. | Γubuk H et al. | β | 2025 | β |
| Versatile roles of rubredoxin reductase of Pseudomonas aeruginosa TBCF10839 in virulence and stress protection. | Wiehlmann L et al. | β | 2025 | β |
| Virulence signature of the endemic vancomycin-resistant <i>Enterococcus faecium</i> clones in Denmark, 2015-2023. | Rubin IMC et al. | β | 2025 | β |
| What Is the Population Structure of Poecilogonic Species? Evidence From Large-Scale Genotyping in a Neogastropod Lineage (Conoidea: Raphitoma). | Chiappa G et al. | β | 2025 | β |
| White paper: standards for handling and analyzing plant pan-genomes. | Heuermann MC et al. | β | 2025 | β |
| Whole-exome sequencing analysis identifies risk genes for schizophrenia. | Chick SL et al. | β | 2025 | β |
| Whole Exome Sequencing for the Identification of Mutations in Bone Marrow CD34+Cells in Hodgkin Lymphoma. | Trang PTH et al. | β | 2025 | β |
| Whole Exome Sequencing Identified a Stop-Gained Mutation in DYSF Gene Associated With Dysferlinopathy in an Iranian Family. | Baghshomali S et al. | β | 2025 | β |
| Whole-genome analysis reveals genetic diversity and selection pressure in Sichuan donkey. | Li C et al. | β | 2025 | β |
| Whole genome and transcriptome profiling in advanced pancreatic cancer patients on the COMPASS trial. | Knox JJ et al. | β | 2025 | β |
| Whole genome characterization of patient-derived lung cancer organoids. | Kwok HH et al. | β | 2025 | β |
| Whole-Genome Resequencing Analysis of Athletic Traits in Grassland-Thoroughbred. | Ding W et al. | β | 2025 | β |
| Whole-Genome Resequencing Analysis Reveals the Local Ancestry and Selection of Kongshan Cattle. | Bai M et al. | β | 2025 | β |
| Whole genome resequencing data of the Iranian cashmere goat breed. | Rezvannejad E et al. | β | 2025 | β |
| Whole Genome Resequencing of 205 Avocado Trees Unveils the Genomic Patterns of Racial Divergence in the Americas. | CaΓ±as-GutiΓ©rrez GP et al. | β | 2025 | β |
| Whole-genome resequencing of a global collection of Napier grass (Cenchrus purpureus) to explore global population structure and QTL governing yield and feed quality traits. | Teshome A et al. | β | 2025 | β |
| Whole-genome resequencing reveals chromosomal fusion-driven early stages of XY chromosomes evolution in the darkbarbel catfish (Tachysurus vachellii). | Liu J et al. | β | 2025 | β |
| Whole genome resequencing reveals genetic diversity, population structure, and selection signatures in local duck breeds. | Ren P et al. | β | 2025 | β |
| Whole genome resequencing reveals genetic markers for plumage colour in Jingyuan Chicken. | Yang L et al. | β | 2025 | β |
| Whole-genome resequencing reveals the genetic diversity, population structure and selection signatures in Chinese indigenous Kele pigs. | Zhu Y et al. | β | 2025 | β |
| Whole genome resequencing uncovers candidate genes related to plumage color in Yuexi frizzled feather chicken. | Peng S et al. | β | 2025 | β |
| Whole-genome resequencing uncovers population structure and candidate molecular markers for litter size in hetian sheep. | Liu B et al. | β | 2025 | β |
| Whole-genome resequencing unveils the phylogeographic coevolution of Oncomelania hupensis with Yangtze River dynamics in China. | Duan L et al. | β | 2025 | β |
| Whole-genome selection signatures identified candidate genes associated with cashmere traits in Inner Mongolia cashmere goats. | Rong Y et al. | β | 2025 | β |
| Whole-genome Sequence Analysis Revealed Novel Subjective Cognitive Decline-associated Genes in 10,763 Chinese. | Wang M et al. | β | 2025 | β |
| Whole genome sequence of <i>Cercospora citrullina</i> strain UNL090101, the causal agent of watermelon spot disease. | Wang H et al. | β | 2025 | β |
| Whole genome sequences of 297 Duolang sheep for litter size. | Fang C et al. | β | 2025 | β |
| Whole-genome sequencing analysis of Burkholderia pseudomallei comparing drug-resistant and pan-susceptible isolates reveals novel biomarkers for drug resistance. | Hinwan Y et al. | β | 2025 | β |
| Whole genome sequencing and structural variations provide insights into the body size traits of Hu sheep. | Xiang X et al. | β | 2025 | β |
| Whole-genome sequencing and variants data of 304 indigenous goats from Southwest China. | Zhang J et al. | β | 2025 | β |
| Whole Genome Sequencing in 25 Families with Suspected Inborn Errors of Immunity: Diagnostic Yield and Clinical Relevance of Genome-wide Analysis. | Lee JK et al. | β | 2025 | β |
| Whole-Genome Sequencing of 54 Dengchuan Cattle (Bos taurus) from Southwest China. | Feng KJ et al. | β | 2025 | β |
| Whole-genome sequencing of 56 Yunling goats and 21 Nubian goats. | Feng KJ et al. | β | 2025 | β |
| Whole-Genome Sequencing of Dorper Γ Hu Hybrid Sheep for Screening Selection Signatures Associated with Litter Size. | Qiao L et al. | β | 2025 | β |
| Whole-genome sequencing of Tahe red deer (<i>Cervus hanglu yarkandensis</i>) reveals genetic diversity and selection signatures. | Pi T et al. | β | 2025 | β |
| Whole-genome sequencing resources of 301 indigenous Tibetan sheep from the Himalayan region. | Zhang J et al. | β | 2025 | β |
| Whole genome sequencing revealed esophageal squamous cell carcinoma related biomarkers. | Li M et al. | β | 2025 | β |
| Whole-genome sequencing reveals complex structural variations at a major locus linked to pigmented spot sizes in Tianfu goats. | Guo J et al. | β | 2025 | β |
| Whole-genome sequencing reveals genetic diversity, population structure, and core collection construction in Korean peach (<i>Prunus persica</i>) germplasm. | Bae SH et al. | β | 2025 | β |
| Whole genome sequencing reveals telomere associated genomic differences between healthy and unhealthy aging in a Korean population. | Oh JH et al. | β | 2025 | β |
| Whole-genome sequencing reveals three follicular lymphoma subtypes with distinct cell of origin and patient outcomes. | Ren W et al. | β | 2025 | β |
| Whole genome sequencing to characterize the molecular epidemiology and drug-resistance of tuberculosis in Huzhou, China. | Ji L et al. | β | 2025 | β |
| X chromosome inactivation across primary human tissues is mostly complete, with significant implications for genetic and clinical studies. | Shriner D et al. | β | 2025 | β |