CTCF gene

Aliases

CCCTC-binding factor, CTCF transcription factor

External links

NCBI Gene · Ensembl · GeneCards · UniProt

Related entities (3)

Mentioned in (60)

Papers in which this entity is mentioned.

• Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition. (2025)
• Nucleotide Transformer: building and evaluating robust foundation models for human genomics. (2025)
• Transcription start sites experience a high influx of heritable variants fueled by early development. (2025)
• A DNA methylation atlas of normal human cell types. (2023)
• Validation of the new EPIC DNA methylation microarray (900K EPIC v2) for high-throughput profiling of the human DNA methylome. (2023)
• At the dawn: cell-free DNA fragmentomics and gene regulation. (2022)
• Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation. (2022)
• Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing. (2022)
• Integrated analysis of multimodal single-cell data. (2021)
• Nanopore sequencing technology, bioinformatics and applications. (2021)
• Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X. (2020)
• Folding Keratin Gene Clusters during Skin Regional Specification. (2020)
• Super-enhancers: critical roles and therapeutic targets in hematologic malignancies. (2019)
• Epigenetic mechanisms in alcohol- and adversity-induced developmental origins of neurobehavioral functioning. (2018)
• The Human Transcription Factors. (2018)
• An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues. (2017)
• Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription. (2017)
• The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies. (2017)
• Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin. (2016)
• Nuclear organization and 3D chromatin architecture in cognition and neuropsychiatric disorders. (2016)
• Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments. (2016)
• Evolutionary Insights into RNA trans-Splicing in Vertebrates. (2016)
• RNA splicing is a primary link between genetic variation and disease. (2016)
• The Hitchhiker's guide to Hi-C analysis: practical guidelines. (2015)
• EWS and FUS bind a subset of transcribed genes encoding proteins enriched in RNA regulatory functions. (2015)
• CTCF as a multifunctional protein in genome regulation and gene expression. (2015)
• Epigenomics and the structure of the living genome. (2015)
• An atlas of active enhancers across human cell types and tissues. (2014)
• Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain. (2014)
• Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation. (2014)
• Common DNA methylation alterations in multiple brain regions in autism. (2014)
• Genomic landscape of Ewing sarcoma defines an aggressive subtype with co-association of STAG2 and TP53 mutations. (2014)
• Fetal alcohol programming of hypothalamic proopiomelanocortin system by epigenetic mechanisms and later life vulnerability to stress. (2014)
• Long-term genomic and epigenomic dysregulation as a consequence of prenatal alcohol exposure: a model for fetal alcohol spectrum disorders. (2014)
• Long-lasting alterations to DNA methylation and ncRNAs could underlie the effects of fetal alcohol exposure in mice. (2013)
• Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition. (2013)
• DNA methylation contributes to natural human variation. (2013)
• Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. (2013)
• Emerging landscape of oncogenic signatures across human cancers. (2013)
• DNA methylation, genotype and gene expression: who is driving and who is along for the ride? (2013)
• Pan-cancer patterns of somatic copy number alteration. (2013)
• Analysis of variation at transcription factor binding sites in Drosophila and humans. (2012)
• ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. (2012)
• An integrated map of genetic variation from 1,092 human genomes. (2012)
• Molecular genetics of B-precursor acute lymphoblastic leukemia. (2012)
• An integrated encyclopedia of DNA elements in the human genome. (2012)
• Regulation of chromatin by histone modifications. (2011)
• CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing. (2011)
• Neuronal LRP1 knockout in adult mice leads to impaired brain lipid metabolism and progressive, age-dependent synapse loss and neurodegeneration. (2010)
• DNA methylation and methyl-CpG binding proteins: developmental requirements and function. (2009)
• Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells. (2009)
• Computation for ChIP-seq and RNA-seq studies. (2009)
• Model-based analysis of ChIP-Seq (MACS). (2008)
• Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans. (2008)
• Model-based analysis of ChIP-Seq (MACS). (2008)
• Model-based analysis of ChIP-Seq (MACS). (2008)
• Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. (2007)
• Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. (2007)
• Origins of cortical interneuron subtypes. (2004)
• GitHub - dozmorovlab/CTCF: Genomic coordinates of FIMO-predicted CTCF binding sites using JASPAR and other PWMs, human and mouse genome assemblies including mm39 and T2T. Also included experimentally derived ENCODE SCREEN CTCF-bound CREs. · GitHub

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