mice cohort

Aliases

8-to-12-week-old mice, Mice, Mus musculus, adult mice, adult mouse, animals, colony, conscious mice, control mice, cultured mouse, ethanol-challenged mice, genetically modified mice, inbred mice, individually housed mice, knockout mice, laboratory mice, mice, mouse, mouse brain, mouse model, murine, rodents, short term selection lines, the mouse, treated mice, unchallenged mice

Related entities (8)

Mentioned in (162)

Papers in which this entity is mentioned.

• Investigation of a global mouse methylome atlas reveals subtype-specific copy number alterations in pediatric cancer models. (2026)
• Integrated in vivo combinatorial functional genomics and spatial transcriptomics of tumours to decode genotype-to-phenotype relationships. (2026)
• Annotating the genome at single-nucleotide resolution with DNA foundation models. (2025)
• Concordance between male- and female-specific GWAS results helps define underlying genetic architecture of complex traits. (2025)
• Analysis of multi-condition single-cell data with latent embedding multivariate regression. (2025)
• Connectome-seq: High-throughput Mapping of Neuronal Connectivity at Single-Synapse Resolution via Barcode Sequencing. (2025)
• Integrated single-cell multiomic profiling of caudate nucleus suggests key mechanisms in alcohol use disorder. (2025)
• Intranasal Administration of KCNN2 Blocking Peptide Improves Deficits in Cognitive Flexibility in Mouse Model of Fetal Alcohol Spectrum Disorders. (2025)
• Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders. (2025)
• Tracing the evolution of single-cell 3D genomes in Kras-driven cancers. (2025)
• Single cell and spatial alternative splicing analysis with Nanopore long read sequencing. (2025)
• High-Parameter Spatial Multi-Omics through Histology-Anchored Integration (2025)
• Mutations in the bone morphogenetic protein signaling pathway sensitize zebrafish and humans to ethanol-induced jaw malformations. (2025)
• Identifying Spatial Co-occurrence in Healthy and InflAmed tissues (ISCHIA). (2024)
• Reduction of APOE accounts for neurobehavioral deficits in fetal alcohol spectrum disorders. (2024)
• Osteosarcoma PDX-Derived Cell Line Models for Preclinical Drug Evaluation Demonstrate Metastasis Inhibition by Dinaciclib through a Genome-Targeted Approach. (2024)
• Machine-guided design of cell-type-targeting cis-regulatory elements. (2024)
• Integrated Single-Cell Multiomic Profiling of Caudate Nucleus Suggests Key Mechanisms in Alcohol Use Disorder. (2024)
• Alternative splicing of transcript mediates the response of circadian clocks to temperature changes. (2024)
• Human 3D brain organoids: steering the demolecularization of brain and neurological diseases. (2023)
• Gene-alcohol interactions in birth defects. (2023)
• A guide to the BRAIN Initiative Cell Census Network data ecosystem. (2023)
• Alcohol and Immunology: Mechanisms of multi-organ damage. Summary of the 2022 alcohol and Immunology research interest group (AIRIG) meeting. (2023)
• Towards understandings of serine/arginine-rich splicing factors. (2023)
• Alternative splicing events as peripheral biomarkers for motor learning deficit caused by adverse prenatal environments. (2023)
• Prenatal alcohol exposure contributes to negative pregnancy outcomes by altering fetal vascular dynamics and the placental transcriptome. (2022)
• mutations, genetic mosaicism and human disease. (2022)
• At the dawn: cell-free DNA fragmentomics and gene regulation. (2022)
• Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling. (2022)
• Embryonic Nicotine Exposure Disrupts Adult Social Behavior and Craniofacial Development in Zebrafish. (2022)
• The pro-apoptotic Bax gene modifies susceptibility to craniofacial dysmorphology following gastrulation-stage alcohol exposure. (2022)
• Single-cell genomic variation induced by mutational processes in cancer. (2022)
• The Neurodata Without Borders ecosystem for neurophysiological data science. (2022)
• Fetal Alcohol Spectrum Disorders: Awareness to Insight in Just 50 Years. (2022)
• Shannon entropy as a metric for conditional gene expression in Neurospora crassa. (2021)
• Nanopore sequencing technology, bioinformatics and applications. (2021)
• Genome-wide admixture mapping of DSM-IV alcohol dependence, criterion count, and the self-rating of the effects of ethanol in African American populations. (2021)
• Evaluating the transcriptional fidelity of cancer models. (2021)
• BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq. (2021)
• Programmed suppression of oxidative phosphorylation and mitochondrial function by gestational alcohol exposure correlate with widespread increases in H3K9me2 that do not suppress transcription. (2021)
• Joint single-cell measurements of nuclear proteins and RNA in vivo. (2021)
• Loss of tumor protein 53 protects against alcohol-induced facial malformations in mice and zebrafish. (2021)
• Exposure to ethanol leads to midfacial hypoplasia in a zebrafish model of FASD via indirect interactions with the Shh pathway. (2021)
• Prenatal alcohol exposure disrupts Sonic hedgehog pathway and primary cilia genes in the mouse neural tube. (2021)
• Simultaneous single cell measurements of intranuclear proteins and gene expression (2021)
• The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. (2020)
• Multifactorial Genetic and Environmental Hedgehog Pathway Disruption Sensitizes Embryos to Alcohol-Induced Craniofacial Defects. (2020)
• Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring. (2020)
• Systematic evaluation of differential splicing tools for RNA-seq studies. (2020)
• Neuroprotective Peptide NAPVSIPQ Antagonizes Ethanol Inhibition of L1 Adhesion by Promoting the Dissociation of L1 and Ankyrin-G. (2020)
• Emerging Roles of SRSF3 as a Therapeutic Target for Cancer. (2020)
• Kcnn2 blockade reverses learning deficits in a mouse model of fetal alcohol spectrum disorders. (2020)
• Addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq (2020)
• Effects of chronic intermittent ethanol exposure and withdrawal on neuroblastoma cell transcriptome. (2020)
• Long-term spatial tracking of cells affected by environmental insults. (2020)
• Cannabinoids Exacerbate Alcohol Teratogenesis by a CB1-Hedgehog Interaction. (2019)
• Genetic compensation triggered by mutant mRNA degradation. (2019)
• CYP2A6 is associated with obesity: studies in human samples and a high fat diet mouse model. (2019)
• Whole-exome sequencing of cervical carcinomas identifies activating ERBB2 and PIK3CA mutations as targets for combination therapy. (2019)
• Maternal circulating miRNAs that predict infant FASD outcomes influence placental maturation. (2019)
• The mutational constraint spectrum quantified from variation in 141,456 humans (2019)
• The Use of Functional Near-Infrared Spectroscopy to Differentiate Alcohol-Related Neurodevelopmental Impairment. (2019)
• Genome-Informed Targeted Therapy for Osteosarcoma. (2019)
• Best practices for bioinformatic characterization of neoantigens for clinical utility. (2019)
• Circular DNA elements of chromosomal origin are common in healthy human somatic tissue. (2018)
• Effects of prenatal alcohol exposure (PAE): insights into FASD using mouse models of PAE. (2018)
• HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis. (2018)
• A compendium of conserved cleavage and polyadenylation events in mammalian genes. (2018)
• Positively selected enhancer elements endow osteosarcoma cells with metastatic competence. (2018)
• Knockdown of Mns1 Increases Susceptibility to Craniofacial Defects Following Gastrulation-Stage Alcohol Exposure in Mice. (2018)
• A novel method for determining sex in late term gestational mice based on the external genitalia. (2018)
• RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments. (2018)
• Diving into the world of alcohol teratogenesis: a review of zebrafish models of fetal alcohol spectrum disorder. (2018)
• The enduring impact of neurulation stage alcohol exposure: A combined behavioral and structural neuroimaging study in adult male and female C57BL/6J mice. (2018)
• PDGFRA gene, maternal binge drinking and obstructive heart defects. (2018)
• EWS/FLI Confers Tumor Cell Synthetic Lethality to CDK12 Inhibition in Ewing Sarcoma. (2018)
• Thymic involution and rising disease incidence with age. (2018)
• Cortical gyrification is abnormal in children with prenatal alcohol exposure. (2017)
• XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation. (2017)
• A pooled mutational analysis identifies ionizing radiation-associated mutational signatures conserved between mouse and human malignancies. (2017)
• Patient-derived xenografts undergo mouse-specific tumor evolution. (2017)
• Genetic vulnerabilities to prenatal alcohol exposure: Limb defects in sonic hedgehog and GLI2 heterozygous mice. (2017)
• Orthotopic patient-derived xenografts of paediatric solid tumours. (2017)
• Gene-environment interactions in development and disease. (2017)
• Preaxial polydactyly following early gestational exposure to the smoothened agonist, SAG, in C57BL/6J mice. (2017)
• Video-based data acquisition system for use in eye blink classical conditioning procedures in sheep. (2017)
• Epigenetics studies of fetal alcohol spectrum disorder: where are we now? (2017)
• PGBD5 promotes site-specific oncogenic mutations in human tumors. (2017)
• Copy-number signatures and mutational processes in ovarian carcinoma (2017)
• B lymphocytes and cancer: a love-hate relationship. (2016)
• The Ensembl gene annotation system. (2016)
• New insights into the generation and role of de novo mutations in health and disease. (2016)
• Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
• An Fgf-Shh signaling hierarchy regulates early specification of the zebrafish skull. (2016)
• Pdgfra and Pdgfrb genetically interact during craniofacial development. (2016)
• Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries. (2016)
• Acute alcohol exposure during neurulation: Behavioral and brain structural consequences in adolescent C57BL/6J mice. (2016)
• Evolutionary Insights into RNA trans-Splicing in Vertebrates. (2016)
• Dose-dependent teratogenicity of the synthetic cannabinoid CP-55,940 in mice. (2016)
• Truncating Erythropoietin Receptor Rearrangements in Acute Lymphoblastic Leukemia. (2016)
• The Genetics of Fetal Alcohol Spectrum Disorders. (2016)
• Peroxisome proliferator-activated receptors α and γ are linked with alcohol consumption in mice and withdrawal and dependence in humans. (2015)
• A Sleeping Beauty forward genetic screen identifies new genes and pathways driving osteosarcoma development and metastasis. (2015)
• The human gene damage index as a gene-level approach to prioritizing exome variants. (2015)
• BET inhibitors induce apoptosis through a MYC independent mechanism and synergise with CDK inhibitors to kill osteosarcoma cells. (2015)
• Advances in Diagnosis and Treatment of Fetal Alcohol Spectrum Disorders: From Animal Models to Human Studies. (2015)
• Hypothalamic-pituitary-adrenal axis and behavioral dysfunction following early binge-like prenatal alcohol exposure in mice. (2015)
• Assessing Computational Steps for CLIP-Seq Data Analysis. (2015)
• Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data. (2015)
• Dissecting FASD through the global transcriptome. (2015)
• Comprehensive genomic profiles of small cell lung cancer. (2015)
• Oncogenic fusion protein EWS-FLI1 is a network hub that regulates alternative splicing. (2015)
• A screen of zebrafish mutants identifies ethanol-sensitive genetic loci. (2014)
• CDK9-mediated transcription elongation is required for MYC addiction in hepatocellular carcinoma. (2014)
• Prenatal alcohol exposure reduces magnetic susceptibility contrast and anisotropy in the white matter of mouse brains. (2014)
• A tensor-based morphometry analysis of regional differences in brain volume in relation to prenatal alcohol exposure. (2014)
• PVT1 dependence in cancer with MYC copy-number increase. (2014)
• Recurrent somatic structural variations contribute to tumorigenesis in pediatric osteosarcoma. (2014)
• Dysmorphogenic effects of first trimester-equivalent ethanol exposure in mice: a magnetic resonance microscopy-based study. (2014)
• The teratogenic effects of prenatal ethanol exposure are exacerbated by Sonic Hedgehog or GLI2 haploinsufficiency in the mouse. (2014)
• Effects of one- and three-day binge alcohol exposure in neonatal C57BL/6 mice on spatial learning and memory in adolescence and adulthood. (2014)
• Effect of prenatal alcohol exposure on bony craniofacial development: a mouse MicroCT study. (2013)
• Mitogen-activated protein kinase modulates ethanol inhibition of cell adhesion mediated by the L1 neural cell adhesion molecule. (2013)
• Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. (2013)
• Cancer genome landscapes. (2013)
• P-value-based regulatory motif discovery using positional weight matrices. (2013)
• Associations between multivitamin supplement use and alcohol consumption before pregnancy: Pregnancy Risk Assessment Monitoring System, 2004 to 2008. (2013)
• A rare population of CD24(+)ITGB4(+)Notch(hi) cells drives tumor propagation in NSCLC and requires Notch3 for self-renewal. (2013)
• Properties of MHC class I presented peptides that enhance immunogenicity. (2013)
• Whole-genome sequencing identifies genetic alterations in pediatric low-grade gliomas. (2013)
• Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice. (2013)
• ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. (2012)
• T-maze learning in weanling lambs. (2012)
• Uberon, an integrative multi-species anatomy ontology. (2012)
• Molecular genetics of B-precursor acute lymphoblastic leukemia. (2012)
• Fast computation and applications of genome mappability. (2012)
• Novel mutations target distinct subgroups of medulloblastoma. (2012)
• Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs. (2012)
• Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent. (2012)
• BRCA1 and BRCA2: different roles in a common pathway of genome protection. (2011)
• Fetal alcohol spectrum disorders: experimental treatments and strategies for intervention. (2011)
• Magnetic resonance-based imaging in animal models of fetal alcohol spectrum disorder. (2011)
• Functional consequences of developmentally regulated alternative splicing. (2011)
• Focus on: magnetic resonance-based studies of fetal alcohol spectrum disorders in animal models. (2011)
• Ventromedian forebrain dysgenesis follows early prenatal ethanol exposure in mice. (2011)
• Agrin function associated with ocular development is a target of ethanol exposure in embryonic zebrafish. (2011)
• Imaging the impact of prenatal alcohol exposure on the structure of the developing human brain. (2011)
• Biobehavioral markers of adverse effect in fetal alcohol spectrum disorders. (2011)
• Transcriptional and epigenetic mechanisms of addiction. (2011)
• Focus on: the use of animal models for the study of fetal alcohol spectrum disorders. (2011)
• Cleft lip and palate results from Hedgehog signaling antagonism in the mouse: Phenotypic characterization and clinical implications. (2010)
• Alcohol-induced facial dysmorphology in C57BL/6 mouse models of fetal alcohol spectrum disorder. (2010)
• Genesis of teratogen-induced holoprosencephaly in mice. (2010)
• Magnetic resonance microscopy defines ethanol-induced brain abnormalities in prenatal mice: effects of acute insult on gestational day 7. (2010)
• Magnetic resonance microscopy-based analyses of the brains of normal and ethanol-exposed fetal mice. (2010)
• Maternal ethanol consumption alters the epigenotype and the phenotype of offspring in a mouse model. (2010)
• The plausibility of maternal nutritional status being a contributing factor to the risk for fetal alcohol spectrum disorders: the potential influence of zinc status as an example. (2010)
• Facial Image Classification of Mouse Embryos for the Animal Model Study of Fetal Alcohol Syndrome. (2009)
• Computation for ChIP-seq and RNA-seq studies. (2009)
• Magnetic resonance microscopy defines ethanol-induced brain abnormalities in prenatal mice: effects of acute insult on gestational day 8. (2009)
• Chronic binge ethanol-mediated acidemia reduces availability of glutamine and related amino acids in maternal plasma of pregnant sheep. (2008)
• A large-scale analysis of mRNA polyadenylation of human and mouse genes. (2005)

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