Gm12878 cohort

Aliases

ENCODE cell line GM12878

Related entities (6)

Mentioned in (27)

Papers in which this entity is mentioned.

• Advancing regulatory variant effect prediction with AlphaGenome. (2026)
• ChromoGen: Diffusion model predicts single-cell chromatin conformations. (2025)
• Functional analysis of cancer-associated germline risk variants. (2025)
• Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition. (2025)
• Transcription start sites experience a high influx of heritable variants fueled by early development. (2025)
• Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs. (2020)
• Diverse noncoding mutations contribute to deregulation of cis-regulatory landscape in pediatric cancers. (2020)
• Reciprocal monoallelic expression of ASAR lncRNA genes controls replication timing of human chromosome 6. (2020)
• Nanopore sequencing and assembly of a human genome with ultra-long reads. (2018)
• The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions. (2018)
• Picky comprehensively detects high-resolution structural variants in nanopore long reads. (2018)
• Constrained release of lamina-associated enhancers and genes from the nuclear envelope during T-cell activation facilitates their association in chromosome compartments. (2017)
• An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues. (2017)
• chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data. (2017)
• Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin. (2016)
• Recurrent somatic mutations in regulatory regions of human cancer genomes. (2015)
• The landscape of long noncoding RNAs in the human transcriptome. (2015)
• Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data. (2015)
• An atlas of active enhancers across human cell types and tissues. (2014)
• DNA methylation contributes to natural human variation. (2013)
• Analysis of variation at transcription factor binding sites in Drosophila and humans. (2012)
• ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. (2012)
• Landscape of transcription in human cells. (2012)
• Identifying ChIP-seq enrichment using MACS. (2012)
• Annotation of functional variation in personal genomes using RegulomeDB. (2012)
• GENCODE: the reference human genome annotation for The ENCODE Project. (2012)
• An integrated encyclopedia of DNA elements in the human genome. (2012)

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