zebrafish cohort

Aliases

Danio rerio

Related entities (5)

Mentioned in (161)

Papers in which this entity is mentioned.

• Lineage labeling with zebrafish hand2 Cre and CreERT2 recombinase CRISPR knock-ins. (2026)
• Annotating the genome at single-nucleotide resolution with DNA foundation models. (2025)
• Nkx2.7 is a conserved regulator of craniofacial development. (2025)
• Mutations in the bone morphogenetic protein signaling pathway sensitize zebrafish and humans to ethanol-induced jaw malformations. (2025)
• Machine-guided design of cell-type-targeting cis-regulatory elements. (2024)
• Zebrafish raptor mutation inhibits the activity of mTORC1, inducing craniofacial defects due to autophagy-induced neural crest cell death. (2024)
• Mutations in the Bone Morphogenetic Protein signaling pathway sensitize zebrafish and humans to ethanol-induced jaw malformations. (2024)
• Embryonic ethanol exposure disrupts craniofacial neuromuscular integration in zebrafish larvae. (2023)
• Gene-alcohol interactions in birth defects. (2023)
• High-throughput detection of craniofacial defects in fluorescent zebrafish. (2023)
• Chronic oligodendrocyte injury in central nervous system pathologies. (2022)
• GATA4/5/6 family transcription factors are conserved determinants of cardiac versus pharyngeal mesoderm fate. (2022)
• Embryonic Nicotine Exposure Disrupts Adult Social Behavior and Craniofacial Development in Zebrafish. (2022)
• Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma. (2022)
• Retinoic acid signaling restricts the size of the first heart field within the anterior lateral plate mesoderm. (2021)
• Anterior lateral plate mesoderm gives rise to multiple tissues and requires tbx5a function in left-right asymmetry, migration dynamics, and cell specification of late-addition cardiac cells. (2021)
• Effects of nicotinic acetylcholine receptor-activating alkaloids on anxiety-like behavior in zebrafish. (2021)
• Loss of tumor protein 53 protects against alcohol-induced facial malformations in mice and zebrafish. (2021)
• Atrial and Sinoatrial Node Development in the Zebrafish Heart. (2021)
• Exposure to ethanol leads to midfacial hypoplasia in a zebrafish model of FASD via indirect interactions with the Shh pathway. (2021)
• Fetal alcohol spectrum disorder predisposes to metabolic abnormalities in adulthood. (2020)
• Multifactorial Genetic and Environmental Hedgehog Pathway Disruption Sensitizes Embryos to Alcohol-Induced Craniofacial Defects. (2020)
• Murine Models for the Study of Fetal Alcohol Spectrum Disorders: An Overview. (2020)
• Novel Ethanol-Sensitive Mutants Identified in an F3 Forward Genetic Screen. (2020)
• Cannabinoids Exacerbate Alcohol Teratogenesis by a CB1-Hedgehog Interaction. (2019)
• Genetic compensation triggered by mutant mRNA degradation. (2019)
• Social behavioral phenotyping of the zebrafish casper mutant following embryonic alcohol exposure. (2019)
• Highly Efficient CRISPR-Cas9-Based Methods for Generating Deletion Mutations and F0 Embryos that Lack Gene Function in Zebrafish. (2019)
• Differentially sensitive neuronal subpopulations in the central nervous system and the formation of hindbrain heterotopias in ethanol-exposed zebrafish. (2019)
• De Novo Missense Variants in FBXW11 Cause Diverse Developmental Phenotypes Including Brain, Eye, and Digit Anomalies. (2019)
• Social deficits following embryonic ethanol exposure arise in post-larval zebrafish. (2019)
• Hippocampal deficits in neurodevelopmental disorders. (2019)
• A compendium of conserved cleavage and polyadenylation events in mammalian genes. (2018)
• Diving into the world of alcohol teratogenesis: a review of zebrafish models of fetal alcohol spectrum disorder. (2018)
• Slit-Robo signalling in heart development. (2018)
• PDGFRA gene, maternal binge drinking and obstructive heart defects. (2018)
• Failed Progenitor Specification Underlies the Cardiopharyngeal Phenotypes in a Zebrafish Model of 22q11.2 Deletion Syndrome. (2018)
• Satellite-like cells contribute to pax7-dependent skeletal muscle repair in adult zebrafish. (2017)
• Ensembl 2017. (2017)
• Long-term behavioral change as a result of acute ethanol exposure in zebrafish: Evidence for a role for sonic hedgehog but not retinoic acid signaling. (2017)
• Gene-environment interactions in development and disease. (2017)
• Genome-wide analysis of facial skeletal regionalization in zebrafish. (2017)
• Unique developmental trajectories and genetic regulation of ventricular and outflow tract progenitors in the zebrafish second heart field. (2017)
• TGF-β Signaling Is Necessary and Sufficient for Pharyngeal Arch Artery Angioblast Formation. (2017)
• DNA replication timing during development anticipates transcriptional programs and parallels enhancer activation. (2017)
• Detect tissue heterogeneity in gene expression data with BioQC. (2017)
• Epigenetics studies of fetal alcohol spectrum disorder: where are we now? (2017)
• Transcriptome Profiling Identifies Ribosome Biogenesis as a Target of Alcohol Teratogenicity and Vulnerability during Early Embryogenesis. (2017)
• The Ensembl gene annotation system. (2016)
• Prenatal Exposure to Arsenic Impairs Behavioral Flexibility and Cortical Structure in Mice. (2016)
• The Nicotine-Evoked Locomotor Response: A Behavioral Paradigm for Toxicity Screening in Zebrafish (Danio rerio) Embryos and Eleutheroembryos Exposed to Methylmercury. (2016)
• Fishing for Fetal Alcohol Spectrum Disorders: Zebrafish as a Model for Ethanol Teratogenesis. (2016)
• An Fgf-Shh signaling hierarchy regulates early specification of the zebrafish skull. (2016)
• Genetic and functional analyses demonstrate a role for abnormal glycinergic signaling in autism. (2016)
• Pdgfra and Pdgfrb genetically interact during craniofacial development. (2016)
• Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries. (2016)
• Ibuprofen slows migration and inhibits bowel colonization by enteric nervous system precursors in zebrafish, chick and mouse. (2016)
• The Genetics of Fetal Alcohol Spectrum Disorders. (2016)
• Zebrafish as a Vertebrate Model System to Evaluate Effects of Environmental Toxicants on Cardiac Development and Function. (2016)
• Fetal Alcohol Spectrum Disorders: An Overview from the Glia Perspective. (2015)
• Origin, Specification, and Plasticity of the Great Vessels of the Heart. (2015)
• Impairment of social behaviour persists two years after embryonic alcohol exposure in zebrafish: A model of fetal alcohol spectrum disorders. (2015)
• A dynamic intracellular distribution of Vangl2 accompanies cell polarization during zebrafish gastrulation. (2015)
• Mechanisms of retinoic acid signalling and its roles in organ and limb development. (2015)
• Zebrafish retinal defects induced by ethanol exposure are rescued by retinoic acid and folic acid supplement. (2015)
• Analysis of crosstalk between retinoic acid and sonic hedgehog pathways following ethanol exposure in embryonic zebrafish. (2015)
• Advances in Diagnosis and Treatment of Fetal Alcohol Spectrum Disorders: From Animal Models to Human Studies. (2015)
• Embryonic alcohol exposure impairs the dopaminergic system and social behavioral responses in adult zebrafish. (2015)
• Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish. (2015)
• Using zebrafish as a model system for studying the transgenerational effects of dioxin. (2014)
• Strain dependent neurochemical changes induced by embryonic alcohol exposure in zebrafish. (2014)
• Commentary: catching a conserved mechanism of ethanol teratogenicity. (2014)
• Fat-Dachsous signaling coordinates cartilage differentiation and polarity during craniofacial development. (2014)
• The Effects of Arsenic Exposure on Neurological and Cognitive Dysfunction in Human and Rodent Studies: A Review. (2014)
• A screen of zebrafish mutants identifies ethanol-sensitive genetic loci. (2014)
• Simultaneous high-resolution detection of multiple transcripts combined with localization of proteins in whole-mount embryos. (2014)
• An evolutionarily conserved mechanism of calcium-dependent neurotoxicity in a zebrafish model of fetal alcohol spectrum disorders. (2014)
• Genomic factors that shape craniofacial outcome and neural crest vulnerability in FASD. (2014)
• Normalization of RNA-seq data using factor analysis of control genes or samples. (2014)
• A comparison of the different animal models of fetal alcohol spectrum disorders and their use in studying complex behaviors. (2014)
• Neural crest development in fetal alcohol syndrome. (2014)
• Gene-ethanol interactions underlying fetal alcohol spectrum disorders. (2014)
• Fetal alcohol spectrum disorders and their transmission through genetic and epigenetic mechanisms. (2014)
• MiR-153 targets the nuclear factor-1 family and protects against teratogenic effects of ethanol exposure in fetal neural stem cells. (2014)
• Live imaging-based model selection reveals periodic regulation of the stochastic G1/S phase transition in vertebrate axial development. (2014)
• A comparison of the different animal models of fetal alcohol spectrum disorders and their use in studying complex behaviors. (2014)
• Developmental age strengthens barriers to ethanol accumulation in zebrafish. (2014)
• Embryonic alcohol exposure impairs associative learning performance in adult zebrafish. (2014)
• Ethanol alters gene expression and cell organization during optic vesicle evagination. (2013)
• Modeling transformations of neurodevelopmental sequences across mammalian species. (2013)
• Zebrafish second heart field development relies on progenitor specification in anterior lateral plate mesoderm and nkx2.5 function. (2013)
• The zebrafish reference genome sequence and its relationship to the human genome. (2013)
• Ethanol exposure disrupts extraembryonic microtubule cytoskeleton and embryonic blastomere cell adhesion, producing epiboly and gastrulation defects. (2013)
• Complex cardiac defects after ethanol exposure during discrete cardiogenic events in zebrafish: prevention with folic acid. (2013)
• Pdgfra protects against ethanol-induced craniofacial defects in a zebrafish model of FASD. (2013)
• Dysregulation of microRNA expression and function contributes to the etiology of fetal alcohol spectrum disorders. (2013)
• Intrinsic properties of larval zebrafish neurons in ethanol. (2013)
• Suppression and epigenetic regulation of MiR-9 contributes to ethanol teratology: evidence from zebrafish and murine fetal neural stem cell models. (2013)
• Forebrain and hindbrain development in zebrafish is sensitive to ethanol exposure involving agrin, Fgf, and sonic hedgehog function. (2013)
• Zebrafish models of human liver development and disease. (2013)
• Nitric oxide rescues thalidomide mediated teratogenicity. (2012)
• Cannabinoid receptor 1 signaling in embryo neurodevelopment. (2012)
• Strain dependent gene expression and neurochemical levels in the brain of zebrafish: focus on a few alcohol related targets. (2012)
• HDAC1 regulates fear extinction in mice. (2012)
• Effects of prenatal exposure to sodium arsenite on motor and food-motivated behaviors from birth to adulthood in C57BL6/J mice. (2012)
• In vivo genome editing using a high-efficiency TALEN system. (2012)
• CNVs: harbingers of a rare variant revolution in psychiatric genetics. (2012)
• GENCODE: the reference human genome annotation for The ENCODE Project. (2012)
• Skeletogenic fate of zebrafish cranial and trunk neural crest. (2012)
• Analysis of sphingosine-1-phosphate signaling mutants reveals endodermal requirements for the growth but not dorsoventral patterning of jaw skeletal precursors. (2012)
• Cdon mutation and fetal ethanol exposure synergize to produce midline signaling defects and holoprosencephaly spectrum disorders in mice. (2012)
• MicroRNAs control neurobehavioral development and function in zebrafish. (2012)
• Examination of a palatogenic gene program in zebrafish. (2011)
• Retinoic acid production by endocardium and epicardium is an injury response essential for zebrafish heart regeneration. (2011)
• Teratogenic effects of thalidomide: molecular mechanisms. (2011)
• Ethanol-induced microphthalmia is not mediated by changes in retinoic acid or sonic hedgehog signaling during retinal neurogenesis. (2011)
• Rbfox-regulated alternative splicing is critical for zebrafish cardiac and skeletal muscle functions. (2011)
• A Drosophila model for fetal alcohol syndrome disorders: role for the insulin pathway. (2011)
• Magnetic resonance-based imaging in animal models of fetal alcohol spectrum disorder. (2011)
• Agrin function associated with ocular development is a target of ethanol exposure in embryonic zebrafish. (2011)
• Effects of early postnatal exposure to ethanol on retinal ganglion cell morphology and numbers of neurons in the dorsolateral geniculate in mice. (2011)
• Zebrafish as a model to study cardiac development and human cardiac disease. (2011)
• Large-scale analysis of acute ethanol exposure in zebrafish development: a critical time window and resilience. (2011)
• Molecular and phenotypic aspects of CHD7 mutation in CHARGE syndrome. (2010)
• "CRASH"ing with the worm: insights into L1CAM functions and mechanisms. (2010)
• A cross-species analysis of Satb2 expression suggests deep conservation across vertebrate lineages. (2010)
• Genesis of teratogen-induced holoprosencephaly in mice. (2010)
• The molecular genetics of holoprosencephaly. (2010)
• Platelet-derived growth factor receptor beta is critical for zebrafish intersegmental vessel formation. (2010)
• Primary contribution to zebrafish heart regeneration by gata4(+) cardiomyocytes. (2010)
• Zebrafish fetal alcohol syndrome model: effects of ethanol are rescued by retinoic acid supplement. (2010)
• Arsenic transport by zebrafish aquaglyceroporins. (2009)
• Hepatic steatosis in response to acute alcohol exposure in zebrafish requires sterol regulatory element binding protein activation. (2009)
• Long-term behavioral changes in response to early developmental exposure to ethanol in zebrafish. (2009)
• Sonic hedgehog ligand partners with caveolin-1 for intracellular transport. (2009)
• Pathogenesis of holoprosencephaly. (2009)
• Frontoparietal white matter diffusion properties predict mental arithmetic skills in children. (2009)
• DNA methylation and methyl-CpG binding proteins: developmental requirements and function. (2009)
• The embryonic preoptic area is a novel source of cortical GABAergic interneurons. (2009)
• Haploinsufficiency of Six3 fails to activate Sonic hedgehog expression in the ventral forebrain and causes holoprosencephaly. (2008)
• Circulating microRNAs as stable blood-based markers for cancer detection. (2008)
• MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis. (2008)
• Development and tissue origins of the mammalian cranial base. (2008)
• Differences in acute alcohol-induced behavioral responses among zebrafish populations. (2008)
• 3' end mRNA processing: molecular mechanisms and implications for health and disease. (2008)
• Platelet-derived growth factor receptor beta signaling is required for efficient epicardial cell migration and development of two distinct coronary vascular smooth muscle cell populations. (2008)
• Mechanisms for persistent microphthalmia following ethanol exposure during retinal neurogenesis in zebrafish embryos. (2007)
• Vessel and blood specification override cardiac potential in anterior mesoderm. (2007)
• Holoprosencephaly. (2007)
• Repression of smoothened by patched-dependent (pro-)vitamin D3 secretion. (2006)
• Effects of ethanol on photoreceptors and visual function in developing zebrafish. (2006)
• Effects of acute and chronic ethanol exposure on the behavior of adult zebrafish (Danio rerio). (2006)
• Zebrafish narrowminded disrupts the transcription factor prdm1 and is required for neural crest and sensory neuron specification. (2005)
• The zebrafish gene map defines ancestral vertebrate chromosomes. (2005)
• Two zebrafish alcohol dehydrogenases share common ancestry with mammalian class I, II, IV, and V alcohol dehydrogenase genes but have distinct functional characteristics. (2004)
• Neomycin-induced hair cell death and rapid regeneration in the lateral line of zebrafish (Danio rerio). (2003)
• Zebrafish trilobite identifies new roles for Strabismus in gastrulation and neuronal movements. (2002)
• Nicotinic receptors mediate changes in spinal motoneuron development and axonal pathfinding in embryonic zebrafish exposed to nicotine. (2002)
• Visualization of cranial motor neurons in live transgenic zebrafish expressing green fluorescent protein under the control of the islet-1 promoter/enhancer. (2000)
• Mice lacking the beta3 subunit of the GABAA receptor have the epilepsy phenotype and many of the behavioral characteristics of Angelman syndrome. (1998)
• Neuronal responses of the rabbit cerebellum during acquisition and performance of a classically conditioned nictitating membrane-eyelid response. (1984)

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