samples cohort

Aliases

DNA samples, stock DNAs

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Mentioned in (40)

Papers in which this entity is mentioned.

• Comprehensive repertoire of the chromosomal alteration and mutational signatures across 16 cancer types. (2026)
• Whole-genome landscapes of 1,364 breast cancers. (2026)
• Integrated single-cell multiomic profiling of caudate nucleus suggests key mechanisms in alcohol use disorder. (2025)
• Parent-of-origin effects on complex traits in up to 236,781 individuals. (2025)
• Principles and methods for transferring polygenic risk scores across global populations. (2024)
• The landscape of drug sensitivity and resistance in sarcoma. (2024)
• Explainable multiview framework for dissecting spatial relationships from highly multiplexed data. (2022)
• Research Review: A guide to computing and implementing polygenic scores in developmental research. (2022)
• Inferring gene expression from cell-free DNA fragmentation profiles. (2022)
• Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers. (2022)
• Evaluating the transcriptional fidelity of cancer models. (2021)
• kataegis: an R package for identification and visualization of the genomic localized hypermutation regions using high-throughput sequencing. (2021)
• Biologically informed deep neural network for prostate cancer discovery. (2021)
• Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes. (2021)
• Immuno-genomic landscape of osteosarcoma. (2020)
• Tutorial: a guide to performing polygenic risk score analyses. (2020)
• Pan-cancer landscape of homologous recombination deficiency. (2020)
• Germline variants associated with leukocyte genes predict tumor recurrence in breast cancer patients. (2019)
• A Compendium of Mutational Signatures of Environmental Agents. (2019)
• CALDER: Inferring Phylogenetic Trees from Longitudinal Tumor Samples. (2019)
• Circular DNA elements of chromosomal origin are common in healthy human somatic tissue. (2018)
• Enter the Matrix: Factorization Uncovers Knowledge from Omics. (2018)
• Genome doubling shapes the evolution and prognosis of advanced cancers. (2018)
• The Immune Landscape of Cancer. (2018)
• Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes (2018)
• HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures. (2017)
• Integrative clustering of multi-level 'omic data based on non-negative matrix factorization algorithm. (2017)
• Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors. (2017)
• Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
• FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing. (2016)
• Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression. (2016)
• Estimating telomere length from whole genome sequence data. (2014)
• Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability. (2013)
• Signatures of mutational processes in human cancer. (2013)
• ACMG clinical laboratory standards for next-generation sequencing. (2013)
• Emerging landscape of oncogenic signatures across human cancers. (2013)
• A cross-sample statistical model for SNP detection in short-read sequencing data. (2012)
• Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data. (2012)
• Genomic regions identified by overlapping clusters of nominally-positive SNPs from genome-wide studies of alcohol and illegal substance dependence. (2011)
• High-resolution mapping of copy-number alterations with massively parallel sequencing. (2009)

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