SNP associated_with gene

Subject: SNP
Relation: associated_with
Object: gene
p-value: —

Evidence from: primary | all sources

Evidence (8 sources)

Parsing genetically influenced risk pathways: genetic loci impact problematic alcohol use via externalizing and specific risk. (2022) PMID:36180423 primary

H-MAGMA ... to assign non-coding ... SNPs to genes based on their chromatin interactions.

confidence: 0.92

Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction. (2021) PMID:34446935 primary

functional annotation of the 579 SNPs to their nearest gene

confidence: 0.90

Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression. (2021) PMID:34475573 cited

We analyzed only SNP/PGS–gene pairs tested in at least two cohorts.

confidence: 0.80

A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines. (2013) PMID:23345460 cited

testing whether a SNP is associated with the expression of any possible transcripts belong to the gene

confidence: 0.95

Gene set analysis of genome-wide association studies: methodological issues and perspectives. (2011) PMID:21565265 cited

SNPs lie within genes

confidence: 0.95

Incorporating age at onset of smoking into genetic models for nicotine dependence: evidence for interaction with multiple genes. (2010) PMID:20624154 cited

These SNPs cover a total of 348 genes.

confidence: 0.85

i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study. (2010) PMID:20435672 cited

significant genes are defined as the genes mapped with at least one of the top 5% of all SNPs

confidence: 0.95

Gene-wide analyses of genome-wide association data sets: evidence for multiple common risk alleles for schizophrenia and bipolar disorder and for overlap in genetic risk. (2009) PMID:19065143 cited

mapped all the SNPs to genes defined by the start and end positions... output file provided information on SNPs ... and the genes in which they are placed

confidence: 0.95