Table 2 lists results with P < 10−5 for each of the three analyses. (Online file genred_supplementary_data.txt provides data for all results with P < 0.001 in any analysis.) Rows report data for the “best” SNP in independent regions (whether gene-containing or not) with P < 10−5 for one or more SNPs. In most regions, many SNPs were in strong linkage disequilibrium (LD) and gave similar results. Genes and other functional elements are noted in the table if P-values less than 10−5 were observed either within the transcribed boundaries of the gene, or within 50 kb upstream or downstream, except that the closest genes are listed for some nongenic regions. Table S13 provides names of these genes summarizes their known functional roles. Regions in Table 2 for which no gene or element is listed have peaks of similarity to known regulatory sequences by the ESPERR regulatory potential method available as a UCSC browser track.35
