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Chunk #16 — Materials and Methods — Follow-up SNP/indel association testing with nicotine dependence in independent samples

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Genome-wide meta-analysis reveals common splice site acceptor variant in CHRNA4 associated with nicotine dependence.
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For any novel region having genome-wide significant association with nicotine dependence, we selected SNPs and indels associated at meta-analysis P<5 × 10−5 for follow-up testing across five independent European-ancestry samples: Yale-Penn study,33, 34, 35 Finnish Twin Cohort Study (FTC),36, 37 University of Wisconsin-Transdisciplinary Tobacco Use Research Center (UW-TTURC),12 Genetic Association Information Network (GAIN) GWAS of Schizophrenia and Molecular Genetics of Schizophrenia—nonGAIN Sample.