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Chunk #68 — Online Methods (Limit 3,000 words, at end of manuscript, currently 2,064) — In-silico replication of SCZ-associated genes in mouse models

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Gene expression imputation across multiple brain regions provides insights into schizophrenia risk.
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We calculated the rate of phenotypic abnormalities in all mouse lines with reduced expression of genes identified in our prediXcan analysis (“SCZ-associated mouse lines”). We compared these to (1) the ‘baseline’ rate of phenotypic abnormalities across all 10,288 mouse lines; and (2) the rate of abnormalities in mouse lines associated with other disorders. To do this, we downloaded all publicly-available whole-blood-derived S-PrediXcan results (as of March 2018, see URLs). In total, we obtained data for 1,907 genes reaching p < 5 × 10−6, across 65 studies. We calculated rates of phenotypic abnormalities for each of these 65 studies.