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Chunk #98 — Quantification and Statistical Analysis — Level 3 - Normalization (NORM)

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A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles.
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After applying LISS, we standardize the shape of the expression profile distributions on each plate by applying quantile normalization, or QNORM. This is done by first sorting each profile by expression level, and then normalizing the data by setting the highest-ranking value in each profile to the median of all the highest ranking values, the next highest value to the median of the next highest values, and so on down to the data for the lowest expression level.