paperKB
coga / coga-kb
Help
Sign in

Chunk #3 — Introduction

Source
A systematic mapping approach of 16q12.2/FTO and BMI in more than 20,000 African Americans narrows in on the underlying functional variation: results from the Population Architecture using Genomics and Epidemiology (PAGE) study.
Embedded
yes

Text

that functional studies can be labor- and cost-intensive, narrowing the associated region is an important step toward elucidating the underlying molecular mechanism. While molecular evaluation of the 16q12.2/FTO locus provides some promising leads [34], the putative functional variant(s) in this locus remain under investigation, and fine-mapping studies have been limited with respect to the number of tested variants, sample sizes and inclusion of non-EA populations. Fine-mapping studies, particularly when conducted within a broader region, may also identify additional independent signal(s) implicating multiple functional variants in the region. To better understand the relationship of genetic variation at this locus and BMI in AAs, we comprehensively assessed the association of BMI with variants in the 16q12.2/FTO region and flanking gene RPGRIP1L in over 20,000 AA samples from the Population Architecture using Genetics and Epidemiology (PAGE) consortium. We used the Metabochip as genotyping platform [35], which included all suitable SNPs discovered in the 1000 Genomes Project Pilot 1 for the 16q12.2/FTO region and led to successfully genotyping of over 1,500 SNPs. This together with imputation into the updated 1000 Genomes Project allowed us to densely fine-mapping this region. In addition, we performed a detailed bioinformatic analysis to propose candidate polymorphisms for follow-up functional