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Chunk #5 — Materials and methods — RNA extraction

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Quality control parameters on a large dataset of regionally dissected human control brains for whole genome expression studies.
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Total RNA was isolated from human post-mortem brain tissues based on the single-step method of RNA isolation (Chomczynski and Sacchi 1987) using the miRNeasy 96 kit (Qiagen, Crawley, UK). Brain tissues (50–100 mg) were collected and weighed in RNase-free 96-well plates. A minimum of one extraction was performed from each tissue sample. All steps were performed on dry ice prior to the addition of the QIAzol® Reagent. All samples were homogenised in 4°C using the TissueLyser II (Retsch, Castleford, UK) for 4–5 min at 30 Hz in 800 μL of QIAzol with the addition of two 3-mm stainless steel beads. In this step, the solution was homogenised until no large pieces remained.