Chunk #7 — Materials and Methods — SOFTWARE

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Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.

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Genotypic data were managed and analyzed using PLINK v1.04–1.06.24 STAR*D results were compiled and visualized with WGAViewer v1.25T-Z25 and HaploView v4.126. Quality control and association analyses were carried out with PLINK, except for imputation analyses and analysis of imputed data as described below and in Supplementary Methods.