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Chunk #33 — RESULTS

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A comparison of approaches to account for uncertainty in analysis of imputed genotypes.
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Here we present results on simulated phenotypes from both simulated and real genotype data, as well as imputed genotypes from standard software packages. For various settings (sample sizes, effect sizes, real and simulated genotypes, genetic models), we tabulate power results overall, as well as plot them by imputation accuracy and allele frequency (calculated from the full cohort of 1,000 individuals).