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Chunk #6 — Introduction

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A genome-wide investigation of SNPs and CNVs in schizophrenia.
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In schizophrenia, four genome-wide screens for large CNVs have recently appeared. Two papers showed that large (>100 kb), rare deletions and duplications that disrupted genes were significantly more common in schizophrenia cases than controls [21],[22], and that the disrupted genes in patients were disproportionately from neurodevelopmental pathways [21]. Another showed that de novo CNVs were eight times more frequent in sporadic cases of schizophrenia than they were in familial cases or unaffected controls [23]. While neither of these papers succeeded in identifying particular CNVs as definitive schizophrenia risk factors, the greater load of CNVs reported in cases implicate this type of genetic variant in schizophrenia. Consistent with this, Stefansson et al. [24] recently screened for de novo CNVs and focused on three recurrent CNVs in 4,718 patients and 41,201 controls (including, for replication purposes only, all samples investigated in this study), located at 1q21.1, 15q11.2 and 15q13.3, with odds ratios of 14.8, 2.7 and 11.5. Two of these same loci were also reported as risk factors by the International Schizophrenia Consortium (also including the Aberdeen samples used here) [22].