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Chunk #20 — UTILITY OF THE TOPPGENE SUITE

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ToppGene Suite for gene list enrichment analysis and candidate gene prioritization.
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et al. (40) Franke et al. (41)STAT3111Crohns diseaseFranke et al. (41)PTPN2306ObesityRenstrom et al. (42)MC4R11Mean6.811.75The gene-disease associations were from recently reported GWAS and include novel disease gene associations. The training sets were compiled using ‘phenotype/disease’ annotations in NCBI's Entrez Gene records and OMIM. To build the test set genes, we defined the artificial linkage interval to be the set of genes containing the 99 nearest neighboring genes to the novel disease gene based on their genomic distance on the same chromosome.