Chunk #11 — Materials and Methods — QUALITY CONTROL ANALYSES — SNPs — STAR*D

Source

Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.

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(a) using data for 806 controls genotyped on Affy 6.0 and 500K28, 61,440 SNPs were excluded for which more than 1% of samples had discordant calls (>8 for autosomal SNPs, >7 for chromosome X);