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Chunk #12 — EVALUATION OF THE QUALITY OF COEXPRESSED GENE LIST — Refinement of the statistical evaluation of each coexpressed gene list

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COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.
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= \max _{r \in R} \left[ {{\rm COXSIM_{1\% }^g} (r)} \right] \end{equation*}\end{document}To assess statistical significance, the \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{upgreek} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{document} }{}${{\it maxCOXSIM}_{1\% }^g}$\end{document} value is compared with the null distribution generated under the same number of genes in listg. On the COXPRESdb, the significance level, which we call the supportability, is shown as the number of stars according to the following P-value thresholds: 1E-04 for one star, 1E-16 for two stars and 1E-32 for three stars (example: http://coxpresdb.jp/cgi-bin/coex_list.cgi?gene=7535&sp=Hsa). Detail explanation for supportability is shown in the COXPRESdb help page [http://coxpresdb.jp/help/supportability/].