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Chunk #64 — STAR★METHODS — QUANTIFICATION AND STATISTICAL ANALYSIS — Expression-based mapping of SNPs — TWAS

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Trans-ancestry genome-wide study of depression identifies 697 associations implicating cell types and pharmacotherapies.
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To account for multiple testing of genes across panels, we used the transcriptome-wide significance threshold previously estimated using a permutation procedure.79 The threshold for transcriptome-wide significance was p = 1.37×10−6. A more stringent significance threshold (α = .001; p= 3.69×10−8) was applied to distinguish high-confidence associations.