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Chunk #5 — Methods — Association testing in replication samples

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Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.
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The combined analysis of the replication samples was performed in a similar manner to the meta-analysis. For each study, we constructed a test statistic that had standard normal distribution under the null hypothesis of no association, and that also captured the direction of the effect. A combined test statistic was calculated as a linear combination of the individual study scores with weights proportional to the square root of the number of cases, and p-values were obtained using normal approximations.