of Pou6f1 maps as a trans-QTL (at LOD score of 3) to Qrr1d in the hippocampus dataset, and its expression was down-regulated more than 44-fold in the Fmn2−/− line. While the expression analysis of Fmn2-null mice does not definitively link all the trans-QTLs to Fmn2, variation in this gene is likely to underlie some of the trans-QTLs in Qrr1d. The possible compensatory mechanism in the Fmn2-null CNS, and the different genetic background of the mice (129/SvEv) are factors that may have contributed to the weak detection of trans-effects in the knockout line.