paperKB
coga / coga-kb
Processing
Help
Sign in

Chunk #10 — Methods — Polygenic scores (PGS)

Source
Clinical, genomic, and neurophysiological correlates of lifetime suicide attempts among individuals with alcohol dependence.
Embedded
yes

Text

To date, GWAS have been overwhelmingly limited to individuals of European ancestries [52]. Because of variation in allele frequencies and linkage disequilibrium (LD) patterns, PGS often lose predictive accuracy when there is mismatch between the ancestries of the discovery GWAS and target sample [53, 54]. COGA includes participants of both African and European ancestries, thus we used PRS-CSx [55], a method that integrates GWAS summary statistics from well-powered GWAS (typically of European ancestries) with those from other populations to improve the predictive power of PGS in the participants of African ancestries in COGA. PRS-CSx employs a Bayesian approach to correct GWAS summary statistics for the non-independence of SNPs in LD. We converted PGS into Z-scores for ease of interpretation