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Chunk #2 — Candidate genes, linkage and linkage disequilibirium — Candidate genes

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Genomewide association studies: history, rationale, and prospects for psychiatric disorders.
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When the pathophysiology of a disease is known (e.g., an enzyme deficiency), it may be straightforward to define candidate genes and to determine which DNA sequence variants predict who becomes ill. For psychiatric disorders, pathophysiologies are unknown. Most candidate gene hypotheses are based on the effects of psychiatric medications on monoamine neurotransmission, focusing particularly on several functional polymorphisms in dopaminergic or serotonergic pathways (i.e., sequence variants that alter relevant receptor proteins or enzymes). (3, 4) None has been shown to be associated with a psychiatric disorder with a level of significance that would lead to general acceptance of a finding.