In order to study whether the genetic associations with PTSD vary across different ancestries, we first tried to replicate our six EUA and AFA top hits in the other main ancestry groups (EUA, AFA and AMA, respectively). No evidence of replication was found by directly comparing the six leading markers, nor by investigating the larger genomic regions harboring the signal (Supplementary Figs. 16–21). In addition, we did not identify any genome-wide significant hits by performing a trans-ethnic genome-wide meta-analysis across the six main ancestry groups (N = 29,556 cases and 166,145 controls) under fixed- and random-effect models (Supplementary Fig. 22).