Chunk #74 — Online Methods — Creation of Cell Type-specific ATAC-seq Profiles

Source

Integrated Single-Cell Multiomic Profiling of Caudate Nucleus Suggests Key Mechanisms in Alcohol Use Disorder.

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Peak calling was performed separately for cells from each of the 16 cell types (excluding glutamatergic neurons) using the CallPeaks function in Signac with default parameters. The function uses MACS2100 for peak calling.