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Chunk #58 — Methods — S-MultiXcan/S-PrediXcan.

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Multi-ancestry meta-analysis of tobacco use disorder identifies 461 potential risk genes and reveals associations with multiple health outcomes.
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We used S-MultiXcan v0.7.0 (an extension of S-PrediXcan v0.6.244) to identify specific eQTL-linked genes associated with TUD. This approach uses genetic information to predict transcript abundance in 13 brain tissues, and tests whether the predicted transcripts correlate with TUD. S-PrediXcan uses pre-computed tissue weights from the Genotype-Tissue Expression (GTEx) v8 project database (https://www.gtexportal.org/) as the reference transcriptome dataset. For S-PrediXcan and S-MultiXcan analyses, we chose to use sparse (elastic net) prediction models, which are available at http://predictdb.hakyimlab.org/. We applied a conservative Bonferroni correction based on the total number of gene-tissue pairs tested (14,198 gene-tissue pairs tested; p<3.52E−06).