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Chunk #35 — Methods — Nicotine dependence variants

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Molecular genetics of nicotine dependence and abstinence: whole genome association using 520,000 SNPs.
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a requirement for nominal significance (p < 0.05) of SNPs lying within the same genes [56] (manuscript in preparation) and iii) COGA (Collaborative study on the genetics of alcoholism) alcohol dependent vs control comparisons, based on a requirement for nominal significance (p < 0.05) of SNPs lying within the same genes [55] and c) produce an enhanced (eg. lower) Monte Carlo p value for the overall association in comparisons of the current smoker/control data with these four other sample sets vs the Monte Carlo p values for the data from the four other sample sets alone. Each of these Monte Carlo simulation trials began with sampling from a database that contains the results from the current study and results from a larger database that contains data from the prior association studies in the four additional samples noted above to which we compare the current results. For each of these 100,000 simulation trials, a randomly-selected set of SNPs was chosen and the same procedure that had been followed for the actual data was run. The number of trials for which the results from the randomly-selected set of SNPs matched or exceeded the results actually observed from the SNPs identified in the