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Chunk #20 — Methods — Application of methods — Univariate (UV) analysis, meta-analysis of univariate results (UV-MA) and UV-PCA

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A comparison of multivariate genome-wide association methods.
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UV analyses were performed as described under ‘TATES’. Resulting p-values were extracted for the purpose of this study. UV-MA was performed with METAL [24] (http://www.sph.umich.edu/csg/abecasis/Metal/), using univariate results per trait as input files and the analysis scheme ‘scheme samplesize’, which uses p-value and direction of effect as input for the MA and weighs according to sample size. PCA was performed in R using the princomp command. UV-PCA was executed using the first principal component (PC) in a univariate analysis as described above.