Of all the exogenous molecules that can perturb human biological processes, which ones qualify as drugs? A molecule in widespread clinical use as indicated by its IUPHAR annotations is clearly qualified. In addition, we include molecules whose potential therapeutic mechanisms of action have been defined at a molecular level even if those molecules are not yet approved for clinical use or are restricted to a pre-clinical setting because of toxic side effects, if this annotation is useful to illustrate the mechanism of action and possible limitations in the application of a drug class in human systems. These broad boundaries are compatible with Reactome’s role as a biomedical research tool, rather than as a resource to support clinical decision making.