paperKB
coga / coga-kb
Help
Sign in

Chunk #34 — Methods — Filtering and tagging of selected markers

Source
Smokescreen: a targeted genotyping array for addiction research.
Embedded
yes

Text

Each content category was submitted to Affymetrix as a list of markers or genomic regions. Affymetrix used proprietary software and a Axiom-validated marker database to select the best-performing markers (one or more probesets per marker) that covered the targeted content, either through direct inclusion or through efficient pairwise tagging. Multiple probesets were selected for markers that are either non-validated or deemed high priority (e.g., markers with known associations with addiction, smoking behavior, or nicotine metabolism), in order to minimize genotyping failures of these markers.