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Chunk #59 — Online Methods — Identification and evaluation of candidate tumor purity and ploidy values

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Absolute quantification of somatic DNA alterations in human cancer.
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Some complication arises due to the fact that the data consist of copy-ratios calculated from a segmentation of the genome. For consistent interpretation, the mixture weights (P(si|wi, θ)) must be calculated for each segment separately, taking into account the variable genomic fraction wi. This is accomplished by constraining the canonical averages of genomic mass allocated to each copy-state to match those specified by θ: