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Chunk #24 — Results and discussion — Over-represented motifs in alternative exons in the human brain, testis and liver

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Variation in alternative splicing across human tissues.
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exons expressed specifically in the human brain [29]. The motifs in cluster BR7 (containing UAGG) are similar to the high-affinity binding site UAGGG [A/U], identified for the splicing repressor protein hnRNP A1 by SELEX experiments [64]. The consensus sequences for the remaining clusters BR2 to BR6 (GGGU, UGGG, GGGA, CUCA, UAGC, respectively), as well as BR7, all resembled motifs identified in a screen for exonic splicing silencers (ESSs) in cultured human cells (Z. Wang and C.B.B., unpublished results), suggesting that most or all of the motifs BR1 to BR7 represent sequences directly involved in mediating exon skipping. In particular, G-rich elements, which are known to act as intronic splicing enhancers [65,66], may function as silencers of splicing when present in an exonic context.