The data generated in this study are publicly available, at multiple levels of pre-processing, via GEO (accession GSE92742 and pre-processing code via GitHub https://github.com/cmap/cmapM), and for easier use via the CLUE analysis environment at https://clue.io. In particular, a web app that allows users to input gene sets from their study of interest so as to find matching conditions in the CMap database is available at https://clue.io/l1000-query