Chunk #57 — Methods — ATAC-seq integration, visualization

Source

Integrated single-cell multiomic profiling of caudate nucleus suggests key mechanisms in alcohol use disorder.

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Text

Cell type labels were transferred to the ATAC-seq object using the assignments for each barcode determined from the snRNA-seq data. Barcodes without a matching QC-passed snRNA-seq barcode were excluded, leaving 250,537 cells from 159 samples. UMAP visualization was calculated with the RunUMAP command, using the integrated_lsi reduction.