Gene model structure details and sequences for all 19 annotated mouse genomes are also accessible from MGI’s MouseMine (http://www.mousemine.org) through its user interface and web services (MouseMine web services back the Multiple Genome Viewer). Using MouseMine, researchers may search for genes in specific strains and retrieve relevant data including transcripts, exons in a GFF file, and CDSs in FASTA format. On a MouseMine gene page—or when viewing a list of genes—several new query templates are automatically run and provide easy navigation and retrieval of the structural components of gene models (e.g. exons, introns) across user-selected strains. These new templates provide access from a gene to its strain-specific genomic sequences, transcripts, CDSs, or exons. An Export button, located above a report, will allow a user to download results in several formats: tab or comma-separated file, FASTA or GFF3.
