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Chunk #47 — Results/Discussion — Single Locus Model

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Data and theory point to mainly additive genetic variance for complex traits.
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much higher when the dominant allele is at low frequency, e.g. 0.1, than are V G and V D when the recessive is at low frequency, e.g. p = 0.9. Even for an overdominant locus (a = 0), all genetic variance becomes additive at extreme gene frequencies. Considering now expectations (E) over the frequency distributions, let η 2 = E(V A)/E(V G), an equivalent to narrow sense heritability if V E = 0. For the ‘U’ distribution, η 2 = 1−d 2/(3a 2+2d 2) and for the uniform distribution, η 2 = 1−2d 2/(5a 2+3d 2). Hence, for a completely dominant locus, η 2 = 0.8 and η 2 = 0.75 respectively; whereas V A/V G = 0.67 for p = 0.5. In summary, the fraction of the genetic variance that is additive genetic decreases as the proportion of genes at extreme frequencies decreases (Table 2).