paperKB
coga / coga-kb
Help
Sign in

Chunk #10 — ENHANCEMENTS AND UPDATES — Fuzzy enrichment analysis

Source
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
Embedded
yes

Text

A fuzzy set is composed of a pair \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{upgreek} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{document} }{}$\{ S,\ m\}$\end{document}, where S is a set and m is a membership function defined over the members of the set: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{upgreek} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{document} }{}$m:S \to [0,1]$\end{document}. For each \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{upgreek} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{document} }{}$\ x \in S$\end{document}, the value m(x) is the grade of membership of x, such that if \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{upgreek} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{document} }{}$m(x) = 0$\end{document} then x is termed ‘not in the set’ and if \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{upgreek} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{document} }{}$m(x) = 1$\end{document} then x is termed ‘completely in the set’, and intermediate values of x are considered to have intermediate fuzzy membership. In these terms, the simple gene sets referred to above are called ‘crisp sets’ because all the genes in these sets have a membership value of 1. Another common representation for fuzzy sets is \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{upgreek} \usepackage{mathrsfs} \setlength{\oddsidemargin}{-69pt} \begin{document} }{}\begin{equation*}\left\{ {m({x_1})/{x_1}\ ,\ m({x_2})/{x_2},\ \ldots \ } \right\}\end{equation*}\end{document}