A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals.
paper
Cited
Public
Unavailable
- Authors
- Browning, Brian L; Browning, Sharon R
- Year
- 2009
- Journal
- American journal of human genetics
- PMID
- 19200528
- DOI
- 10.1016/j.ajhg.2009.01.005
- PMCID
- PMC2668004
We present methods for imputing data for ungenotyped markers and for inferring haplotype phase in large data sets of unrelated individuals and parent-offspring trios. Our methods make use of known haplotype phase when it is available, and our methods are computationally efficient so that the full information in large reference panels with thousands of individuals is utilized. We demonstrate that substantial gains in imputation accuracy accrue with increasingly large reference panel sizes, particularly when imputing low-frequency variants, and that unphased reference panels can provide highly accurate genotype imputation. We place our methodology in a unified framework that enables the simultaneous use of unphased and phased data from trios and unrelated individuals in a single analysis. For unrelated individuals, our imputation methods produce well-calibrated posterior genotype probabilities and highly accurate allele-frequency estimates. For trios, our haplotype-inference method is four orders of magnitude faster than the gold-standard PHASE program and has excellent accuracy. Our methods enable genotype imputation to be performed with unphased trio or unrelated reference panels, thus accounting for haplotype-phase uncertainty in the reference panel. We present a useful measure of imputation accuracy, allelic R(2), and show that this measure can be estimated accurately from posterior genotype probabilities. Our methods are implemented in version 3.0 of the BEAGLE software package.
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| Diversification, Introgression, and Rampant Cytonuclear Discordance in Rocky Mountains Chipmunks (Sciuridae: Tamias). | Sarver BAJ et al. | β | 2021 | β |
| Evaluation of Bayesian alphabet and GBLUP based on different marker density for genomic prediction in Alpine Merino sheep. | Zhu S et al. | β | 2021 | β |
| Fast and Scalable Private Genotype Imputation Using Machine Learning and Partially Homomorphic Encryption. | Sarkar E et al. | β | 2021 | β |
| Fine Mapping Analysis of the MHC Region to Identify Variants Associated With Chinese Vitiligo and SLE and Association Across These Diseases. | Cao L et al. | β | 2021 | β |
| Genetic diversity in global chicken breeds in relation to their genetic distances to wild populations. | Malomane DK et al. | β | 2021 | β |
| Genetic Parameters and Genome-Wide Association Studies of Eight Longevity Traits Representing Either Full or Partial Lifespan in Chinese Holsteins. | Zhang H et al. | β | 2021 | β |
| Genetic pre-screening for glaucoma in population-based epidemiology: protocol for a double-blind prospective screening study within Lifelines (EyeLife). | Neustaeter A et al. | β | 2021 | β |
| Genome-wide association studies for mottled eggs in chickens using a high-density single-nucleotide polymorphism array. | Qu L et al. | β | 2021 | β |
| Genome-wide association study and functional analyses for clinical and subclinical ketosis in Holstein cattle. | Soares RAN et al. | β | 2021 | β |
| Genome wide association study for the identification of genes associated with tail fat deposition in Chinese sheep breeds. | Zhu C et al. | β | 2021 | β |
| Genome-wide association study in diverse Iranian wheat germplasms detected several putative genomic regions associated with stem rust resistance. | Saremirad A et al. | β | 2021 | β |
| Genome-Wide Association Study of Meat Quality Traits in a Three-Way Crossbred Commercial Pig Population. | Gao G et al. | β | 2021 | β |
| Genomic analyses and biological validation of candidate genes for rectal temperature as an indicator of heat stress in Holstein cattle. | Luo H et al. | β | 2021 | β |
| Genomic Analyses Revealed the Genetic Difference and Potential Selection Genes of Growth Traits in Two Duroc Lines. | Li D et al. | β | 2021 | β |
| Genomic insight into the divergence and adaptive potential of a forgotten landrace G.Β hirsutum L. purpurascens. | Nazir MF et al. | β | 2021 | β |
| Genomic Prediction across Structured Hybrid Populations and Environments in Maize. | Li D et al. | β | 2021 | β |
| Genomic Prediction Using LD-Based Haplotypes Inferred From High-Density Chip and Imputed Sequence Variants in Chinese Simmental Beef Cattle. | Li H et al. | β | 2021 | β |
| Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer. | Ferreiro-Iglesias A et al. | β | 2021 | β |
| GWAS and Post-GWAS High-Resolution Mapping Analyses Identify Strong Novel Candidate Genes Influencing the Fatty Acid Composition of the <i>Longissimus dorsi</i> Muscle in Pigs. | Lee JB et al. | β | 2021 | β |
| Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences. | OrtuΓ±o FM et al. | β | 2021 | β |
| How imputation can mitigate SNP ascertainment Bias. | Geibel J et al. | β | 2021 | β |
| Hybridization Dynamics and Extensive Introgression in the Daphnia longispina Species Complex: New Insights from a High-Quality Daphnia galeata Reference Genome. | Nickel J et al. | β | 2021 | β |
| Identification of Candidate Variants Associated With Bone Weight Using Whole Genome Sequence in Beef Cattle. | Niu Q et al. | β | 2021 | β |
| Identification of deleterious recessive haplotypes and candidate deleterious recessive mutations in Japanese Black cattle. | Sasaki S et al. | β | 2021 | β |
| Impact of pre- and post-variant filtration strategies on imputation. | Charon C et al. | β | 2021 | β |
| Increasing the resolution and precision of psychiatric genome-wide association studies by re-imputing summary statistics using a large, diverse reference panel. | Chatzinakos C et al. | β | 2021 | β |
| Large-scale genome-wide association study, using historical data, identifies conserved genetic architecture of cyanogenic glucoside content in cassava (Manihot esculenta Crantz) root. | Ogbonna AC et al. | β | 2021 | β |
| Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis. | Chen ZQ et al. | β | 2021 | β |
| Machine learning based disease prediction from genotype data. | Katsaouni N et al. | β | 2021 | β |
| Marker-based crop model-assisted ideotype design to improve avoidance of abiotic stress in bread wheat. | Bogard M et al. | β | 2021 | β |
| Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory. | Sato Y et al. | β | 2021 | β |
| Non-additive association analysis using proxy phenotypes identifies novel cattle syndromes. | Reynolds EGM et al. | β | 2021 | β |
| Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials. | Costa-Neto G et al. | β | 2021 | β |
| PharmVar GeneFocus: CYP2C9. | Sangkuhl K et al. | β | 2021 | β |
| Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation. | Gao Y et al. | β | 2021 | β |
| Polygenic risk score for bipolar disorder associates with divergent thinking and brain structures in the prefrontal cortex. | Takeuchi H et al. | β | 2021 | β |
| Protein-coding repeat polymorphisms strongly shape diverse human phenotypes. | Mukamel RE et al. | β | 2021 | β |
| Regional association analysis coupled with transcriptome analyses reveal candidate genes affecting seed oil accumulation in Brassica napus. | Yao M et al. | β | 2021 | β |
| Sequence-based genome-wide association study of individual milk mid-infrared wavenumbers in mixed-breed dairy cattle. | Tiplady KM et al. | β | 2021 | β |
| Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability. | Lagou V et al. | β | 2021 | β |
| The look ahead trace back optimizer for genomic selection under transparent and opaque simulators. | Amini F et al. | β | 2021 | β |
| The patterns of deleterious mutations during the domestication of soybean. | Kim MS et al. | β | 2021 | β |
| Towards a Cost-Effective Implementation of Genomic Prediction Based on Low Coverage Whole Genome Sequencing in Dezhou Donkey. | Zhao C et al. | β | 2021 | β |
| Accuracy of whole-genome sequence imputation using hybrid peeling in large pedigreed livestock populations. | Ros-Freixedes R et al. | β | 2020 | β |
| Across-breed validation study confirms and identifies new loci associated with sexual precocity in Brahman and Nellore cattle. | de Melo TP et al. | β | 2020 | β |
| Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats. | Gileta AF et al. | β | 2020 | β |
| Advances in genetics toward identifying pathogenic cell states of rheumatoid arthritis. | Amariuta T et al. | β | 2020 | β |
| Advances in genome-wide association studies of complex traits in rice. | Wang Q et al. | β | 2020 | β |
| A genomewide association study in divergently selected lines in rabbits reveals novel genomic regions associated with litter size traits. | Sosa-Madrid BS et al. | β | 2020 | β |
| AlphaFamImpute: high-accuracy imputation in full-sib families from genotype-by-sequencing data. | Whalen A et al. | β | 2020 | β |
| A new mechanism for a familiar mutation - bovine DGAT1 K232A modulates gene expression through multi-junction exon splice enhancement. | Fink T et al. | β | 2020 | β |
| Animal-ImputeDB: a comprehensive database with multiple animal reference panels for genotype imputation. | Yang W et al. | β | 2020 | β |
| ANOVA-HD: Analysis of variance when both input and output layers are high-dimensional. | de Los Campos G et al. | β | 2020 | β |
| Cannabinoids and psychotic symptoms: A potential role for a genetic variant in the P2X purinoceptor 7 (P2RX7) gene. | Boks MP et al. | β | 2020 | β |
| Classical Human Leukocyte Antigen Alleles and C4 Haplotypes Are Not Significantly Associated With Depression. | Glanville KP et al. | β | 2020 | β |
| Combining Partially Overlapping Multi-Omics Data in Databases Using Relationship Matrices. | Akdemir D et al. | β | 2020 | β |
| Comparison Between Core Set Selection Methods Using Different Illumina Marker Platforms: A Case Study of Assessment of Diversity in Wheat. | Soleimani B et al. | β | 2020 | β |
| Comparisons of improved genomic predictions generated by different imputation methods for genotyping by sequencing data in livestock populations. | Wang X et al. | β | 2020 | β |
| Demographic assessment of the Dalmatian dog - effective population size, linkage disequilibrium and inbreeding coefficients. | Vasiliadis D et al. | β | 2020 | β |
| Detection of copy number variation and selection signatures on the X chromosome in Chinese indigenous sheep with different types of tail. | Zhu C et al. | β | 2020 | β |
| Development of a low-density panel for genomic selection of pigs in Russia. | Shashkova TI et al. | β | 2020 | β |
| Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering. | Rio S et al. | β | 2020 | β |
| Dominance Effects and Functional Enrichments Improve Prediction of Agronomic Traits in Hybrid Maize. | Ramstein GP et al. | β | 2020 | β |
| Elevated risk of invasive group A streptococcal disease and host genetic variation in the human leucocyte antigen locus. | Parks T et al. | β | 2020 | β |
| Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling. | Ros-Freixedes R et al. | β | 2020 | β |
| Evidence for widespread selection in shaping the genomic landscape during speciation of Populus. | Wang J et al. | β | 2020 | β |
| Extensive haplotypes are associated with population differentiation and environmental adaptability in Upland cotton (Gossypium hirsutum). | Dai P et al. | β | 2020 | β |
| Fine mapping of the MHC region identifies major independent variants associated with Han Chinese primary biliary cholangitis. | Wang C et al. | β | 2020 | β |
| Genetic Architecture of Early Vigor Traits in Wild Soybean. | Kofsky J et al. | β | 2020 | β |
| Genetic architecture of subspecies divergence in trace mineral accumulation and elemental correlations in the rice grain. | Tan Y et al. | β | 2020 | β |
| Genetic determinants of the humoral immune response in MS. | Gasperi C et al. | β | 2020 | β |
| Genome-wide association studies using binned genotypes. | An B et al. | β | 2020 | β |
| Genome-Wide Association Study and Genomic Prediction Elucidate the Distinct Genetic Architecture of Aluminum and Proton Tolerance in <i>Arabidopsis thaliana</i>. | Nakano Y et al. | β | 2020 | β |
| Genome-wide association study identifies favorable SNP alleles and candidate genes for frost tolerance in pea. | Beji S et al. | β | 2020 | β |
| Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry. | de las Fuentes L et al. | β | 2020 | β |
| Genome-wide scan of selection signatures in Dehong humped cattle for heat tolerance and disease resistance. | Li R et al. | β | 2020 | β |
| Genome-wide signatures of environmental adaptation in European aspen (<i>Populus tremula</i>) under current and future climate conditions. | Ingvarsson PK et al. | β | 2020 | β |
| Genomic analysis reveals selection signatures of the Wannan Black pig during domestication and breeding. | Zhang W et al. | β | 2020 | β |
| Genomic Analysis Using Bayesian Methods under Different Genotyping Platforms in Korean Duroc Pigs. | Lee J et al. | β | 2020 | β |
| Genomic characterization of Ugandan smallholder farmer-preferred cassava varieties. | Iragaba P et al. | β | 2020 | β |
| Genomic Scan for Selection Signature Reveals Fat Deposition in Chinese Indigenous Sheep with Extreme Tail Types. | Zhao F et al. | β | 2020 | β |
| Identifying candidate genes associated with sperm morphology abnormalities using weighted single-step GWAS in a Duroc boar population. | Zhao Y et al. | β | 2020 | β |
| Identifying Candidate Genes for Hypoxia Adaptation of Tibet Chicken Embryos by Selection Signature Analyses and RNA Sequencing. | Liu X et al. | β | 2020 | β |
| Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets. | Berger E et al. | β | 2020 | β |
| Improving Imputation Quality in BEAGLE for Crop and Livestock Data. | Pook T et al. | β | 2020 | β |
| imputeqc: an R package for assessing imputation quality of genotypes and optimizing imputation parameters. | Khvorykh GV et al. | β | 2020 | β |
| Multi-trait Genomic Selection Methods for Crop Improvement. | Moeinizade S et al. | β | 2020 | β |
| Pre-selecting markers based on fixation index scores improved the power of genomic evaluations in a combined Yorkshire pig population. | Ye S et al. | β | 2020 | β |
| Ranbow: A fast and accurate method for polyploid haplotype reconstruction. | Moeinzadeh MH et al. | β | 2020 | β |
| Selective Loss of Diversity in Doubled-Haploid Lines from European Maize Landraces. | Zeitler L et al. | β | 2020 | β |
| Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. | Warren WC et al. | β | 2020 | β |
| SNP-based quantitative deconvolution of biological mixtures: application to the detection of cows with subclinical mastitis by whole-genome sequencing of tank milk. | Coppieters W et al. | β | 2020 | β |
| Taro Genome Assembly and Linkage Map Reveal QTLs for Resistance to Taro Leaf Blight. | Bellinger MR et al. | β | 2020 | β |
| The complex pattern of genetic associations of leprosy with HLA class I and class II alleles can be reduced to four amino acid positions. | Dallmann-Sauer M et al. | β | 2020 | β |
| The fine-scale genetic structure and selection signals of Chinese indigenous pigs. | Huang M et al. | β | 2020 | β |
| The superiority of multi-trait models with genotype-by-environment interactions in a limited number of environments for genomic prediction in pigs. | Song H et al. | β | 2020 | β |
| Treatment- and population-specific genetic risk factors for anti-drug antibodies against interferon-beta: a GWAS. | Andlauer TFM et al. | β | 2020 | β |
| Across-years prediction of hybrid performance in maize using genomics. | Schrag TA et al. | β | 2019 | β |
| A genome-wide association study explores the genetic determinism of host resistance to Salmonella pullorum infection in chickens. | Li X et al. | β | 2019 | β |
| An average-case sublinear forward algorithm for the haploid Li and Stephens model. | Rosen YM et al. | β | 2019 | β |
| A Random Forests Framework for Modeling Haplotypes as Mosaics of Reference Haplotypes. | Faux P et al. | β | 2019 | β |
| A splice donor variant in CCDC189 is associated with asthenospermia in Nordic Red dairy cattle. | Iso-Touru T et al. | β | 2019 | β |
| Association of LTA gene haploblock with periodontal disease in Italian adults. | Zupin L et al. | β | 2019 | β |
| Challenges in funding and developing genomic software: roots and remedies. | Siepel A | β | 2019 | β |
| Chromosome polymorphisms track trans-Atlantic divergence and secondary contact in Atlantic salmon. | Lehnert SJ et al. | β | 2019 | β |
| Comparing genomic signatures of domestication in two Atlantic salmon (<i>Salmo salar</i> L.) populations with different geographical origins. | LΓ³pez ME et al. | β | 2019 | β |
| Comparison of genomic predictions for carcass and reproduction traits in Berkshire, Duroc and Yorkshire populations in Korea. | Iqbal A et al. | β | 2019 | β |
| Comparison of shape quantification methods for genomic prediction, and genome-wide association study of sorghum seed morphology. | Sakamoto L et al. | β | 2019 | β |
| Deep Kernel for Genomic and Near Infrared Predictions in Multi-environment Breeding Trials. | Cuevas J et al. | β | 2019 | β |
| Detection of QTLs associated with mungbean yellow mosaic virus (MYMV) resistance using the interspecific cross of Vigna radiata Γ Vigna umbellata. | Mathivathana MK et al. | β | 2019 | β |
| Discovery of interesting new polymorphisms in a sugar beet (elite Γ exotic) progeny by comparison with an elite panel. | Pegot-Espagnet P et al. | β | 2019 | β |
| Efficient genetic value prediction using incomplete omics data. | Westhues M et al. | β | 2019 | β |
| Estimating the Genome-wide Mutation Rate with Three-Way Identity by Descent. | Tian X et al. | β | 2019 | β |
| Evaluation of GBLUP, BayesB and elastic net for genomic prediction in Chinese Simmental beef cattle. | Wang X et al. | β | 2019 | β |
| Genetic and cytological analyses reveal the recombination landscape of a partially differentiated plant sex chromosome in kiwifruit. | Pilkington SM et al. | β | 2019 | β |
| Genetic architecture and candidate genes detected for chicken internal organ weight with a 600 K single nucleotide polymorphism array. | Dou T et al. | β | 2019 | β |
| Genetic architecture related to contour feathers density in an F<sub>2</sub> resource population via a genome-wide association study. | Sun H et al. | β | 2019 | β |
| Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots. | Ikeogu UN et al. | β | 2019 | β |
| Genetic dissection of developmental responses of agro-morphological traits under different doses of nutrient fertilizers using high-density SNP markers. | Mahender A et al. | β | 2019 | β |
| Genome-Wide Analysis of Genetic Diversity in <i>Plasmodium falciparum</i> Isolates From China-Myanmar Border. | Ye R et al. | β | 2019 | β |
| Genome-wide association analysis of egg production performance in chickens across the whole laying period. | Liu Z et al. | β | 2019 | β |
| Genome-wide associations and epistatic interactions for internode number, plant height, seed weight and seed yield in soybean. | Assefa T et al. | β | 2019 | β |
| Genome-wide Association Studies of Specific Antinuclear Autoantibody Subphenotypes in Primary Biliary Cholangitis. | Wang C et al. | β | 2019 | β |
| Genome-wide association study identifies loci linked to serum electrolyte traits in Chinese Holstein cattle. | Gan QF et al. | β | 2019 | β |
| Genome-wide association study of agronomic traits in bread wheat reveals novel putative alleles for future breeding programs. | Rahimi Y et al. | β | 2019 | β |
| Genome-Wide Association Study of Meat Quality Traits in Hanwoo Beef Cattle Using Imputed Whole-Genome Sequence Data. | Bedhane M et al. | β | 2019 | β |
| Genome-wide association study of the seed transmission rate of soybean mosaic virus and associated traits using two diverse population panels. | Liu Q et al. | β | 2019 | β |
| Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia. | Kornilov SA et al. | β | 2019 | β |
| Genomic analysis of perinatal sucking reflex in German Brown Swiss calves. | Dreher C et al. | β | 2019 | β |
| Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel. | Rio S et al. | β | 2019 | β |
| Genotype Imputation in Genome-Wide Association Studies. | Naj AC | β | 2019 | β |
| Historical Introgressions from a Wild Relative of Modern Cassava Improved Important Traits and May Be Under Balancing Selection. | Wolfe MD et al. | β | 2019 | β |
| Identification of potential genomic regions and candidate genes for egg albumen quality by a genome-wide association study. | Qu L et al. | β | 2019 | β |
| Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references. | Alipour H et al. | β | 2019 | β |
| Imputation of canine genotype array data using 365 whole-genome sequences improves power of genome-wide association studies. | Hayward JJ et al. | β | 2019 | β |
| Imputation to whole-genome sequence using multiple pig populations and its use in genome-wide association studies. | van den Berg S et al. | β | 2019 | β |
| Investigation of the predisposing factor of pemphigus and its clinical subtype through a genome-wide association and next generation sequence analysis. | Sun Y et al. | β | 2019 | β |
| Linkage disequilibrium and haplotype block patterns in popcorn populations. | Andrade ACB et al. | β | 2019 | β |
| Mapping of a novel clubroot resistance QTL using ddRAD-seq in Chinese cabbage (Brassica rapa L.). | Laila R et al. | β | 2019 | β |
| Modeling copy number variation in the genomic prediction of maize hybrids. | Lyra DH et al. | β | 2019 | β |
| Multiple QTL underlie milk phenotypes at the CSF2RB locus. | Lopdell TJ et al. | β | 2019 | β |
| Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres. | LΓ³pez ME et al. | β | 2019 | β |
| Non-coding variability at the APOE locus contributes to the Alzheimer's risk. | Zhou X et al. | β | 2019 | β |
| Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants. | Butty AM et al. | β | 2019 | β |
| RAPID COMMUNICATION: Multi-breed validation study unraveled genomic regions associated with puberty traits segregating across tropically adapted breeds1. | Melo TP et al. | β | 2019 | β |
| Rare Variants Imputation in Admixed Populations: Comparison Across Reference Panels and Bioinformatics Tools. | Sariya S et al. | β | 2019 | β |
| Reducing inbreeding rates with a breeding circle: Theory and practice in Veluws Heideschaap. | Windig JJ et al. | β | 2019 | β |
| Response Surface Analysis of Genomic Prediction Accuracy Values Using Quality Control Covariates in Soybean. | JarquΓn D et al. | β | 2019 | β |
| Scanning the genomes of parents for imprinted loci acting in their un-genotyped progeny. | Blunk I et al. | β | 2019 | β |
| Significance testing and genomic inflation factor using high-density genotypes or whole-genome sequence data. | van den Berg S et al. | β | 2019 | β |
| Sparse Convolutional Denoising Autoencoders for Genotype Imputation. | Chen J et al. | β | 2019 | β |
| The eMERGE genotype set of 83,717 subjects imputed to ~40βmillion variants genome wide and association with the herpes zoster medical record phenotype. | Stanaway IB et al. | β | 2019 | β |
| The Genetic Architecture of Early Body Temperature and Its Correlation With <i>Salmonella Pullorum</i> Resistance in Three Chicken Breeds. | Li X et al. | β | 2019 | β |
| The SYNBREED chicken diversity panel: a global resource to assess chicken diversity at high genomic resolution. | Malomane DK et al. | β | 2019 | β |
| Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions. | Reisberg S et al. | β | 2019 | β |
| Use of a Bayesian model including QTL markers increases prediction reliability when test animals are distant from the reference population. | Ma P et al. | β | 2019 | β |
| Using imputation-based whole-genome sequencing data to improve the accuracy of genomic prediction for combined populations in pigs. | Song H et al. | β | 2019 | β |
| Using imputed whole-genome sequence data to improve the accuracy of genomic prediction for parasite resistance in Australian sheep. | Al Kalaldeh M et al. | β | 2019 | β |
| Weighted single-step GWAS identified candidate genes associated with semen traits in a Duroc boar population. | Gao N et al. | β | 2019 | β |
| Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence. | Wu D et al. | β | 2019 | β |
| Widespread <i>cis</i>-regulation of RNA editing in a large mammal. | Lopdell TJ et al. | β | 2019 | β |
| Accounting for Genotype-by-Environment Interactions and Residual Genetic Variation in Genomic Selection for Water-Soluble Carbohydrate Concentration in Wheat. | Ovenden B et al. | β | 2018 | β |
| Accuracy and bias of genomic prediction with different de-regression methods. | Song H et al. | β | 2018 | β |
| Accuracy of genotype imputation in Labrador Retrievers. | Friedrich J et al. | β | 2018 | β |
| Accuracy of Imputation of Microsatellite Markers from BovineSNP50 and BovineHD BeadChip in Hanwoo Population of Korea. | Sharma A et al. | β | 2018 | β |
| A comparison between genotyping-by-sequencing and array-based scoring of SNPs for genomic prediction accuracy in winter wheat. | Elbasyoni IS et al. | β | 2018 | β |
| A genome-wide association study for left-sided displacement of the abomasum using a high-density single nucleotide polymorphism array. | Lehner S et al. | β | 2018 | β |
| A major locus controls local adaptation and adaptive life history variation in a perennial plant. | Wang J et al. | β | 2018 | β |
| Amino acid residues in five separate HLA genes can explain most of the known associations between the MHC and primary biliary cholangitis. | Darlay R et al. | β | 2018 | β |
| A multi-locus genetic association test for a dichotomous trait and its secondary phenotype. | Zhang H et al. | β | 2018 | β |
| An initiator codon mutation in SDE2 causes recessive embryonic lethality in Holstein cattle. | Fritz S et al. | β | 2018 | β |
| A One-Penny Imputed Genome from Next-Generation Reference Panels. | Browning BL et al. | β | 2018 | β |
| A Simple Test Identifies Selection on Complex Traits. | Beissinger T et al. | β | 2018 | β |
| Assessment of the performance of hidden Markov models for imputation in animal breeding. | Whalen A et al. | β | 2018 | β |
| Association study highlights the influence of ELOVL fatty acid elongase 6 gene region on backfat fatty acid composition in Large White pig breed. | Zappaterra M et al. | β | 2018 | β |
| Beyond Genomic Prediction: Combining Different Types of <i>omics</i> Data Can Improve Prediction of Hybrid Performance in Maize. | Schrag TA et al. | β | 2018 | β |
| Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder. | Li X et al. | β | 2018 | β |
| Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle. | Khansefid M et al. | β | 2018 | β |
| Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids. | Bonnafous F et al. | β | 2018 | β |
| Estimating realized heritability for growth in Zhikong scallop (Chlamys farreri) using genome-wide complex trait analysis | Guo H et al. | β | 2018 | β |
| Evaluating the origin and virulence of a Helicobacter pylori cagA-positive strain isolated from a non-human primate. | Hashi K et al. | β | 2018 | β |
| Evaluation of the potential use of a meta-population for genomic selection in autochthonous beef cattle populations. | Mouresan EF et al. | β | 2018 | β |
| Extent of linkage disequilibrium and effective population size of the Landrace population in Korea. | Shin D et al. | β | 2018 | β |
| Fine mapping of MHC region in lung cancer highlights independent susceptibility loci by ethnicity. | Ferreiro-Iglesias A et al. | β | 2018 | β |
| Gene-level associations in suicide attempter families show overrepresentation of synaptic genes and genes differentially expressed in brain development. | Sokolowski M et al. | β | 2018 | β |
| Genetic Association in the HLA Region. | Moutsianas L et al. | β | 2018 | β |
| Genetic risk factors for osteochondrosis in various horse breeds. | Naccache F et al. | β | 2018 | β |
| Genetic variations for egg quality of chickens at late laying period revealed by genome-wide association study. | Liu Z et al. | β | 2018 | β |
| Genome re-sequencing reveals the evolutionary history of peach fruit edibility. | Yu Y et al. | β | 2018 | β |
| Genome-Wide Association Analysis of Age-Dependent Egg Weights in Chickens. | Liu Z et al. | β | 2018 | β |
| Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium. | de Oliveira Otto MC et al. | β | 2018 | β |
| Genome-wide association study and prediction of genomic breeding values for fatty-acid composition in Korean Hanwoo cattle using a high-density single-nucleotide polymorphism array. | Bhuiyan MSA et al. | β | 2018 | β |
| Genomewide association study for economic traits in the large yellow croaker with different numbers of extreme phenotypes. | Wan L et al. | β | 2018 | β |
| Genome-wide association study for reproductive traits in a Large White pig population. | Wang Y et al. | β | 2018 | β |
| Genome-wide association study identifies a novel locus for cannabis dependence. | Agrawal A et al. | β | 2018 | β |
| Genome-wide association study of Mycobacterium avium subspecies Paratuberculosis infection in Chinese Holstein. | Gao Y et al. | β | 2018 | β |
| Genome-wide association study results for educational attainment aid in identifying genetic heterogeneity of schizophrenia. | Bansal V et al. | β | 2018 | β |
| Genome-wide association study reveals a QTL and strong candidate genes for umbilical hernia in pigs on SSC14. | Grindflek E et al. | β | 2018 | β |
| Genomic dissection and prediction of feed intake and residual feed intake traits using a longitudinal model in F2 chickens. | Emamgholi Begli H et al. | β | 2018 | β |
| Genomic heritability estimates in sweet cherry reveal non-additive genetic variance is relevant for industry-prioritized traits. | Piaskowski J et al. | β | 2018 | β |
| Genomic history of the Sardinian population. | Chiang CWK et al. | β | 2018 | β |
| Genomic Selection Using BayesCΟ and GBLUP for Resistance Against Edwardsiella tarda in Japanese Flounder (Paralichthys olivaceus). | Liu Y et al. | β | 2018 | β |
| Genotype Imputation from Large Reference Panels. | Das S et al. | β | 2018 | β |
| Genotype imputation from various low-density SNP panels and its impact on accuracy of genomic breeding values in pigs. | Grossi DA et al. | β | 2018 | β |
| Genotype imputation performance of three reference panels using African ancestry individuals. | Vergara C et al. | β | 2018 | β |
| HLA-DQΞ²1 amino acid position 87 and DQB1*0301 are associated with Chinese Han SLE. | Sun J et al. | β | 2018 | β |
| Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees. | Whalen A et al. | β | 2018 | β |
| Identification of an Amino Acid Motif in HLA-DRΞ²1 That Distinguishes Uveitis in Patients With Juvenile Idiopathic Arthritis. | Haasnoot AJW et al. | β | 2018 | β |
| Identification of genetic risk factors in the Chinese population implicates a role of immune system in Alzheimer's disease pathogenesis. | Zhou X et al. | β | 2018 | β |
| Identification of novel loci associated with maturity and yield traits in early maturity soybean plant introduction lines. | Copley TR et al. | β | 2018 | β |
| Improving accuracy of bulls' predicted genomic breeding values for fertility using daughters' milk progesterone profiles. | Tenghe AMM et al. | β | 2018 | β |
| Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population. | Ye S et al. | β | 2018 | β |
| Linkage disequilibrium pattern and genome-wide association mapping for meat traits in multiple porcine F<sub>2</sub> crosses. | Stratz P et al. | β | 2018 | β |
| Meta-Analysis of Common and Rare Variants. | Michailidou K | β | 2018 | β |
| Multibreed genomic prediction using multitrait genomic residual maximum likelihood and multitask Bayesian variable selection. | Calus MPL et al. | β | 2018 | β |
| Multimarker and rare variants genomewide association studies for bone weight in Simmental cattle. | Miao J et al. | β | 2018 | β |
| Multitrait meta-analysis identified genomic regions associated with sexual precocity in tropical beef cattle. | Melo TP et al. | β | 2018 | β |
| Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana. | Dittberner H et al. | β | 2018 | β |
| Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing. | Zeng L et al. | β | 2018 | β |
| Pedigree Selection and Information Content. | Vardarajan BN et al. | β | 2018 | β |
| Polygenic analysis of inflammatory disease variants and effects on microglia in the aging brain. | Felsky D et al. | β | 2018 | β |
| Predicting Growth Traits with Genomic Selection Methods in Zhikong Scallop (Chlamys farreri). | Wang Y et al. | β | 2018 | β |
| Predictive ability of genome-assisted statistical models under various forms of gene action. | Momen M et al. | β | 2018 | β |
| Quality Control of Common and Rare Variants. | Panoutsopoulou K et al. | β | 2018 | β |
| Remapping of the belted phenotype in cattle on BTA3 identifies a multiplication event as the candidate causal mutation. | Rothammer S et al. | β | 2018 | β |
| Short communication: Genomic prediction using imputed whole-genome sequence variants in Brown Swiss Cattle. | Frischknecht M et al. | β | 2018 | β |
| Strategies for phasing and imputation in a population isolate. | Herzig AF et al. | β | 2018 | β |
| Taking advantage from phenotype variability in a local animal genetic resource: identification of genomic regions associated with the hairless phenotype in Casertana pigs. | Schiavo G et al. | β | 2018 | β |
| The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. | Togninalli M et al. | β | 2018 | β |
| The Molecular and Neuropathological Consequences of Genetic Risk for Alzheimer's Dementia. | Tasaki S et al. | β | 2018 | β |
| Unravelling genetic variation underlying de novo-synthesis of bovine milk fatty acids. | Knutsen TM et al. | β | 2018 | β |
| Using Different Single-Step Strategies to Improve the Efficiency of Genomic Prediction on Body Measurement Traits in Pig. | Song H et al. | β | 2018 | β |
| Using imputed genotype data in the joint score tests for genetic association and gene-environment interactions in case-control studies. | Song M et al. | β | 2018 | β |
| Utility of whole-genome sequence data for across-breed genomic prediction. | Raymond B et al. | β | 2018 | β |
| Accelerating wheat breeding for end-use quality with multi-trait genomic predictions incorporating near infrared and nuclear magnetic resonance-derived phenotypes. | Hayes BJ et al. | β | 2017 | β |
| Accuracies of breeding values for dry matter intake using nongenotyped animals and predictor traits in different lactations. | Manzanilla-Pech CIV et al. | β | 2017 | β |
| A comparison of different algorithms for phasing haplotypes using Holstein cattle genotypes and pedigree data. | Miar Y et al. | β | 2017 | β |
| A genome-wide association study in a large F2-cross of laying hens reveals novel genomic regions associated with feather pecking and aggressive pecking behavior. | Lutz V et al. | β | 2017 | β |
| An across-breed genome wide association analysis of susceptibility to paratuberculosis in dairy cattle. | Sallam AM et al. | β | 2017 | β |
| An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome. | Ng B et al. | β | 2017 | β |
| Application of a Bayesian non-linear model hybrid scheme to sequence data for genomic prediction and QTL mapping. | Wang T et al. | β | 2017 | β |
| Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels. | Spracklen CN et al. | β | 2017 | β |
| Association of genetic variation in the tachykinin receptor 3 locus with hot flashes and night sweats in the Women's Health Initiative Study. | Crandall CJ et al. | β | 2017 | β |
| Associations between a fetal imprinted gene allele score and late pregnancy maternal glucose concentrations. | Petry CJ et al. | β | 2017 | β |
| Characterising private and shared signatures of positive selection in 37 Asian populations. | Liu X et al. | β | 2017 | β |
| Characterizing a region on BTA11 affecting Ξ²-lactoglobulin content of milk using high-density genotyping and haplotype grouping. | Bedere N et al. | β | 2017 | β |
| Computer vision and machine learning for robust phenotyping in genome-wide studies. | Zhang J et al. | β | 2017 | β |
| Conservation priorities for the different lines of Dutch Red and White Friesian cattle change when relationships with other breeds are taken into account. | Hulsegge B et al. | β | 2017 | β |
| Detection and validation of genomic regions associated with resistance to rust diseases in a worldwide hexaploid wheat landrace collection using BayesR and mixed linear model approaches. | Pasam RK et al. | β | 2017 | β |
| Detection of two non-synonymous SNPs in SLC45A2 on BTA20 as candidate causal mutations for oculocutaneous albinism in Braunvieh cattle. | Rothammer S et al. | β | 2017 | β |
| Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations. | Hu Y et al. | β | 2017 | β |
| Dissection of additive, dominance, and imprinting effects for production and reproduction traits in Holstein cattle. | Jiang J et al. | β | 2017 | β |
| DNA and RNA-sequence based GWAS highlights membrane-transport genes as key modulators of milk lactose content. | Lopdell TJ et al. | β | 2017 | β |
| DNApod: DNA polymorphism annotation database from next-generation sequence read archives. | Mochizuki T et al. | β | 2017 | β |
| Estimates of the actual relationship between half-sibs in a pig population. | GarcΓa-Baccino CA et al. | β | 2017 | β |
| Estimation of kinship coefficient in structured and admixed populations using sparse sequencing data. | Dou J et al. | β | 2017 | β |
| Estimations of linkage disequilibrium, effective population size and ROH-based inbreeding coefficients in Spanish Churra sheep using imputed high-density SNP genotypes. | Chitneedi PK et al. | β | 2017 | β |
| Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle. | Pausch H et al. | β | 2017 | β |
| Exome sequence genotype imputation in globally diverse hexaploid wheat accessions. | Shi F et al. | β | 2017 | β |
| Exploring new alleles for frost tolerance in winter rye. | Erath W et al. | β | 2017 | β |
| Expression quantitative trait loci for PI3K/AKT pathway. | Ryu D et al. | β | 2017 | β |
| Functional confirmation of PLAG1 as the candidate causative gene underlying major pleiotropic effects on body weight and milk characteristics. | Fink T et al. | β | 2017 | β |
| Gene expression analysis of blood, liver, and muscle in cattle divergently selected for high and low residual feed intake. | Khansefid M et al. | β | 2017 | β |
| Gene-Hormone Therapy Interaction and Fracture Risk in Postmenopausal Women. | Wang Y et al. | β | 2017 | β |
| GeneImp: Fast Imputation to Large Reference Panels Using Genotype Likelihoods from Ultralow Coverage Sequencing. | Spiliopoulou A et al. | β | 2017 | β |
| Genetic and genomic analysis of hyperthelia in Brown Swiss cattle. | Butty AM et al. | β | 2017 | β |
| Genetic Architecture and Candidate Genes Identified for Follicle Number in Chicken. | Shen M et al. | β | 2017 | β |
| Genetic Architecture of Charcoal Rot (<i>Macrophomina phaseolina</i>) Resistance in Soybean Revealed Using a Diverse Panel. | Coser SM et al. | β | 2017 | β |
| Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection. | Kommadath A et al. | β | 2017 | β |
| Genetic association study of exfoliation syndrome identifies a protective rare variant at LOXL1 and five new susceptibility loci. | Aung T et al. | β | 2017 | β |
| Genetic Nature of Elemental Contents in Wheat Grains and Its Genomic Prediction: Toward the Effective Use of Wheat Landraces from Afghanistan. | Manickavelu A et al. | β | 2017 | β |
| Genome-Enabled Prediction of Breeding Values for Feedlot Average Daily Weight Gain in Nelore Cattle. | Somavilla AL et al. | β | 2017 | β |
| Genome-wide Association for Major Depression Through Age at Onset Stratification: Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium. | Power RA et al. | β | 2017 | β |
| Genome-wide association mapping for milk fat composition and fine mapping of a QTL for de novo synthesis of milk fatty acids on bovine chromosome 13. | Olsen HG et al. | β | 2017 | β |
| Genome-Wide Associations for Water-Soluble Carbohydrate Concentration and Relative Maturity in Wheat Using SNP and DArT Marker Arrays. | Ovenden B et al. | β | 2017 | β |
| Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle. | Abo-Ismail MK et al. | β | 2017 | β |
| Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits. | Minamikawa MF et al. | β | 2017 | β |
| Genome-wide association study for conformation traits in three Danish pig breeds. | Le TH et al. | β | 2017 | β |
| Genome-Wide Association Study of Piglet Uniformity and Farrowing Interval. | Wang Y et al. | β | 2017 | β |
| Genome-wide Association Study of Susceptibility to Particulate Matter-Associated QT Prolongation. | Gondalia R et al. | β | 2017 | β |
| Genome-wide association test of multiple continuous traits using imputed SNPs. | Wu B et al. | β | 2017 | β |
| Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep. | Demars J et al. | β | 2017 | β |
| Genome-wide mapping of 10 calving and fertility traits in Holstein dairy cattle with special regard to chromosome 18. | MΓΌller MP et al. | β | 2017 | β |
| Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits. | Fang L et al. | β | 2017 | β |
| Genomic-Enabled Prediction in Maize Using Kernel Models with Genotype Γ Environment Interaction. | Bandeira E Sousa M et al. | β | 2017 | β |
| Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons. | Fang L et al. | β | 2017 | β |
| Genomic models with genotypeβΓβenvironment interaction for predicting hybrid performance: an application in maize hybrids. | Acosta-Pech R et al. | β | 2017 | β |
| Genomic prediction for growth and reproduction traits in pig using an admixed reference population. | Song H et al. | β | 2017 | β |
| Genomic Prediction of Sunflower Hybrids Oil Content. | Mangin B et al. | β | 2017 | β |
| Genotyping-by-Sequencing Derived High-Density Linkage Map and its Application to QTL Mapping of Flag Leaf Traits in Bread Wheat. | Hussain W et al. | β | 2017 | β |
| Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank. | Gouesnard B et al. | β | 2017 | β |
| Haplotype reference consortium panel: Practical implications of imputations with large reference panels. | Iglesias AI et al. | β | 2017 | β |
| HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics. | Zheng J et al. | β | 2017 | β |
| Highly accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle. | Frischknecht M et al. | β | 2017 | β |
| High resolution HLA haplotyping by imputation for a British population bioresource. | Neville MJ et al. | β | 2017 | β |
| Histamine Receptor 3 negatively regulates oligodendrocyte differentiation and remyelination. | Chen Y et al. | β | 2017 | β |
| Human Epistatic Interaction Controls IL7R Splicing and Increases Multiple Sclerosis Risk. | Galarza-MuΓ±oz G et al. | β | 2017 | β |
| Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data. | White CC et al. | β | 2017 | β |
| Improving power of association tests using multiple sets of imputed genotypes from distributed reference panels. | Zhou W et al. | β | 2017 | β |
| Improving Response in Genomic Selection with a Population-Based Selection Strategy: Optimal Population Value Selection. | Goiffon M et al. | β | 2017 | β |
| Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders. | Oreper D et al. | β | 2017 | β |
| Including nonadditive genetic effects in mating programs to maximize dairy farm profitability. | Aliloo H et al. | β | 2017 | β |
| Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize. | Yang J et al. | β | 2017 | β |
| Incorporating Gene Annotation into Genomic Prediction of Complex Phenotypes. | Gao N et al. | β | 2017 | β |
| Is there an optimum level of diversity in utilization of genetic resources? | Mayer M et al. | β | 2017 | β |
| Leveraging genomic prediction to scan germplasm collection for crop improvement. | de Azevedo Peixoto L et al. | β | 2017 | β |
| Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (<i>Zea mays</i> L.). | Giraud H et al. | β | 2017 | β |
| <i>UNC5C</i> variants are associated with cerebral amyloid angiopathy. | Yang HS et al. | β | 2017 | β |
| Main and epistatic loci studies in soybean for Sclerotinia sclerotiorum resistance reveal multiple modes of resistance in multi-environments. | Moellers TC et al. | β | 2017 | β |
| Mapping Complex Traits in a Diversity Outbred F1 Mouse Population Identifies Germline Modifiers of Metastasis in Human Prostate Cancer. | Winter JM et al. | β | 2017 | β |
| Maternal variant in the upstream of FOXP3 gene on the X chromosome is associated with recurrent infertility in Japanese Black cattle. | Arishima T et al. | β | 2017 | β |
| Meta-analysis of sequence-based association studies across three cattle breeds reveals 25 QTL for fat and protein percentages in milk at nucleotide resolution. | Pausch H et al. | β | 2017 | β |
| Missing heritability: is the gap closing? An analysis of 32 complex traits in the Lifelines Cohort Study. | Nolte IM et al. | β | 2017 | β |
| Moving Beyond Managing Realized Genomic Relationship in Long-Term Genomic Selection. | De Beukelaer H et al. | β | 2017 | β |
| Natural Selection Drives Rapid Functional Evolution of Young Drosophila Duplicate Genes. | Jiang X et al. | β | 2017 | β |
| Novel harmful recessive haplotypes for reproductive traits in pigs. | HΓ€ggman J et al. | β | 2017 | β |
| Omics-based hybrid prediction in maize. | Westhues M et al. | β | 2017 | β |
| Prediction of genomic breeding values using new computing strategies for the implementation of MixP. | Dong L et al. | β | 2017 | β |
| Prospects for Genomic Selection in Cassava Breeding. | Wolfe MD et al. | β | 2017 | β |
| Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas. | Thorell K et al. | β | 2017 | β |
| Regulation of gene expression and RNA editing in Drosophila adapting to divergent microclimates. | Yablonovitch AL et al. | β | 2017 | β |
| Simultaneous fitting of genomic-BLUP and Bayes-C components in a genomic prediction model. | Iheshiulor OOM et al. | β | 2017 | β |
| The impact of multi-generational genotype imputation strategies on imputation accuracy and subsequent genomic predictions. | Judge MM et al. | β | 2017 | β |
| The influence of genetic susceptibility and calcium plus vitamin D supplementation on fracture risk. | Wang Y et al. | β | 2017 | β |
| The patterns of genomic variances and covariances across genome for milk production traits between Chinese and Nordic Holstein populations. | Li X et al. | β | 2017 | β |
| The Valdostana goat: a genome-wide investigation of the distinctiveness of its selective sweep regions. | Talenti A et al. | β | 2017 | β |
| What can time-frequency and phase coherence measures tell us about the genetic basis of P3 amplitude? | Malone SM et al. | β | 2017 | β |
| zanardi: an open-source pipeline for multiple-species genomic analysis of SNP array data. | Marras G et al. | β | 2017 | β |
| 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. | 1001 Genomes Consortium. Electronic address: magnus.nordborg@gmi.oeaw.ac.at et al. | β | 2016 | β |
| A 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle. | Sahana G et al. | β | 2016 | β |
| Accounting for dominance to improve genomic evaluations of dairy cows for fertility and milk production traits. | Aliloo H et al. | β | 2016 | β |
| Accuracy of genomic prediction using imputed whole-genome sequence data in white layers. | Heidaritabar M et al. | β | 2016 | β |
| A common polymorphism in the ABCB1 gene is associated with side effects of PGP-dependent antidepressants in a large naturalistic Dutch cohort. | Bet PM et al. | β | 2016 | β |
| A comprehensive study of the genomic differentiation between temperate Dent and Flint maize. | Unterseer S et al. | β | 2016 | β |
| A computational method for genotype calling in family-based sequencing data. | Chang LC et al. | β | 2016 | β |
| A frameshift mutation in ARMC3 is associated with a tail stump sperm defect in Swedish Red (Bos taurus) cattle. | Pausch H et al. | β | 2016 | β |
| A frameshift mutation in GON4L is associated with proportionate dwarfism in Fleckvieh cattle. | Schwarzenbacher H et al. | β | 2016 | β |
| A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23. | Richardson IW et al. | β | 2016 | β |
| A genome-wide association study reveals a quantitative trait locus for days open on chromosome 2 in Japanese Black cattle. | Sasaki S et al. | β | 2016 | β |
| A hybrid expectation maximisation and MCMC sampling algorithm to implement Bayesian mixture model based genomic prediction and QTL mapping. | Wang T et al. | β | 2016 | β |
| Allele-Specific Quantification of Structural Variations in Cancer Genomes. | Li Y et al. | β | 2016 | β |
| Allelic Imbalance in Regulation of ANRIL through Chromatin Interaction at 9p21 Endometriosis Risk Locus. | Nakaoka H et al. | β | 2016 | β |
| A Meta-Assembly of Selection Signatures in Cattle. | Randhawa IA et al. | β | 2016 | β |
| A missense mutation in solute carrier family 12, member 1 (SLC12A1) causes hydrallantois in Japanese Black cattle. | Sasaki S et al. | β | 2016 | β |
| A missense mutation in TUBD1 is associated with high juvenile mortality in Braunvieh and Fleckvieh cattle. | Schwarzenbacher H et al. | β | 2016 | β |
| A multi-trait meta-analysis with imputed sequence variants reveals twelve QTL for mammary gland morphology in Fleckvieh cattle. | Pausch H et al. | β | 2016 | β |
| Analysis of Genotyping-by-Sequencing (GBS) Data. | Kagale S et al. | β | 2016 | β |
| An efficient gene-gene interaction test for genome-wide association studies in trio families. | Sung PY et al. | β | 2016 | β |
| An Empirical Comparison of Joint and Stratified Frameworks for Studying G Γ E Interactions: Systolic Blood Pressure and Smoking in the CHARGE Gene-Lifestyle Interactions Working Group. | Sung YJ et al. | β | 2016 | β |
| A nonsense mutation in the COL7A1 gene causes epidermolysis bullosa in Vorderwald cattle. | Pausch H et al. | β | 2016 | β |
| A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis. | Rivas MA et al. | β | 2016 | β |
| A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds. | Michot P et al. | β | 2016 | β |
| Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population. | Ventura RV et al. | β | 2016 | β |
| Assessing and comparison of different machine learning methods in parent-offspring trios for genotype imputation. | Mikhchi A et al. | β | 2016 | β |
| Assigning breed origin to alleles in crossbred animals. | Vandenplas J et al. | β | 2016 | β |
| Characterization of Disease Resistance Loci in the USDA Soybean Germplasm Collection Using Genome-Wide Association Studies. | Chang HX et al. | β | 2016 | β |
| CNV analysis in Chinese children of mental retardation highlights a sex differentiation in parental contribution to de novo and inherited mutational burdens. | Wang B et al. | β | 2016 | β |
| Comparative analysis of the GBLUP, emBayesB, and GWAS algorithms to predict genetic values in large yellow croaker (Larimichthys crocea). | Dong L et al. | β | 2016 | β |
| Confirmation of a non-synonymous SNP in PNPLA8 as a candidate causal mutation for Weaver syndrome in Brown Swiss cattle. | Kunz E et al. | β | 2016 | β |
| Cost-of-illness studies based on massive data: a prevalence-based, top-down regression approach. | Stollenwerk B et al. | β | 2016 | β |
| Coverage recommendation for genotyping analysis of highly heterologous species using next-generation sequencing technology. | Song K et al. | β | 2016 | β |
| Demographic Trends in Korean Native Cattle Explained Using Bovine SNP50 Beadchip. | Sharma A et al. | β | 2016 | β |
| Deploying Fourier Coefficients to Unravel Soybean Canopy Diversity. | Jubery TZ et al. | β | 2016 | β |
| Detection of genomic signatures of recent selection in commercial broiler chickens. | Fu W et al. | β | 2016 | β |
| Differential contribution of genomic regions to marked genetic variation and prediction of quantitative traits in broiler chickens. | Abdollahi-Arpanahi R et al. | β | 2016 | β |
| Diversity analysis and genomic prediction of Sclerotinia resistance in sunflower using a new 25Β K SNP genotyping array. | Livaja M et al. | β | 2016 | β |
| DNM3 and genetic modifiers of age of onset in LRRK2 Gly2019Ser parkinsonism: a genome-wide linkage and association study. | Trinh J et al. | β | 2016 | β |
| Efficient genomic prediction based on whole-genome sequence data using split-and-merge Bayesian variable selection. | Calus MP et al. | β | 2016 | β |
| Estimating relationships between phenotypes and subjects drawn from admixed families. | Blue EM et al. | β | 2016 | β |
| Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data. | Chan AW et al. | β | 2016 | β |
| Evaluation of developed low-density genotype panels for imputation to higher density in independent dairy and beef cattle populations. | Judge MM et al. | β | 2016 | β |
| Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits. | MacLeod IM et al. | β | 2016 | β |
| Expressional profiling of prostate cancer risk SNPs at 11q13.5 identifies DGAT2 as a new target gene. | Nurminen R et al. | β | 2016 | β |
| FAPI: Fast and accurate P-value Imputation for genome-wide association study. | Kwan JS et al. | β | 2016 | β |
| Fast and accurate long-range phasing in a UK Biobank cohort. | Loh PR et al. | β | 2016 | β |
| Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production. | Olsen HG et al. | β | 2016 | β |
| FTO association and interaction with time spent sitting. | Klimentidis YC et al. | β | 2016 | β |
| Genetic Analysis with the Immunochip Platform in BehΓ§et Disease. Identification of Residues Associated in the HLA Class I Region and New Susceptibility Loci. | Ortiz-FernΓ‘ndez L et al. | β | 2016 | β |
| Genetic architecture dissection by genome-wide association analysis reveals avian eggshell ultrastructure traits. | Duan Z et al. | β | 2016 | β |
| Genetic Architecture of Domestication-Related Traits in Maize. | Xue S et al. | β | 2016 | β |
| Genetic variation of major histocompatibility complex (MHC) in wild Red Junglefowl (Gallus gallus). | Nguyen-Phuc H et al. | β | 2016 | β |
| Genome-Wide Analysis Identifies Germ-Line Risk Factors Associated with Canine Mammary Tumours. | Melin M et al. | β | 2016 | β |
| Genome-wide association analyses using a Bayesian approach for litter size and piglet mortality in Danish Landrace and Yorkshire pigs. | Guo X et al. | β | 2016 | β |
| Genome-wide association and genomic prediction identifies associated loci and predicts the sensitivity of Tobacco ringspot virus in soybean plant introductions. | Chang HX et al. | β | 2016 | β |
| Genome-Wide Association Studies for Comb Traits in Chickens. | Shen M et al. | β | 2016 | β |
| Genome-wide association study for endocrine fertility traits using single nucleotide polymorphism arrays and sequence variants in dairy cattle. | Tenghe AMM et al. | β | 2016 | β |
| Genome-wide association study, genomic prediction and marker-assisted selection for seed weight in soybean (Glycine max). | Zhang J et al. | β | 2016 | β |
| GENOME-WIDE ASSOCIATION STUDY (GWAS) AND GENOME-WIDE BY ENVIRONMENT INTERACTION STUDY (GWEIS) OF DEPRESSIVE SYMPTOMS IN AFRICAN AMERICAN AND HISPANIC/LATINA WOMEN. | Dunn EC et al. | β | 2016 | β |
| Genome-Wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of <i>TNFRSF11A</i> and Identification of <i>ZBTB10</i> and Three Distinct HLA Associations. | Seldin MF et al. | β | 2016 | β |
| Genomewide association study of methane emissions in Angus beef cattle with validation in dairy cattle. | Manzanilla-Pech CI et al. | β | 2016 | β |
| Genome-Wide Association Study of Resistance to Soybean Cyst Nematode (Heterodera glycines) HG Type 2.5.7 in Wild Soybean (Glycine soja). | Zhang H et al. | β | 2016 | β |
| Genome-wide studies of von Willebrand factor propeptide identify loci contributing to variation in propeptide levels and von Willebrand factor clearance. | Ozel AB et al. | β | 2016 | β |
| Genomic heritabilities and genomic estimated breeding values for methane traits in Angus cattle. | Hayes BJ et al. | β | 2016 | β |
| Genomic prediction using models with dominance and imprinting effects for backfat thickness and average daily gain in Danish Duroc pigs. | Guo X et al. | β | 2016 | β |
| Genomic prediction using preselected DNA variants from a GWAS with whole-genome sequence data in Holstein-Friesian cattle. | Veerkamp RF et al. | β | 2016 | β |
| Genomic selection for tolerance to heat stress in Australian dairy cattle. | Nguyen TTT et al. | β | 2016 | β |
| Genomic Selection Improves Heat Tolerance in Dairy Cattle. | Garner JB et al. | β | 2016 | β |
| Genomic Selection Using Extreme Phenotypes and Pre-Selection of SNPs in Large Yellow Croaker (Larimichthys crocea). | Dong L et al. | β | 2016 | β |
| Genotype Imputation with Millions of Reference Samples. | Browning BL et al. | β | 2016 | β |
| Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae). | Arbizu CI et al. | β | 2016 | β |
| High density genome wide genotyping-by-sequencing and association identifies common and low frequency SNPs, and novel candidate genes influencing cow milk traits. | Ibeagha-Awemu EM et al. | β | 2016 | β |
| High rates of phasing errors in highly polymorphic species with low levels of linkage disequilibrium. | Bukowicki M et al. | β | 2016 | β |
| Human leucocyte antigen class I and II imputation in a multiracial population. | Kuniholm MH et al. | β | 2016 | β |
| Identification of a haplotype associated with cholesterol deficiency and increased juvenile mortality in Holstein cattle. | Kipp S et al. | β | 2016 | β |
| Identification of Multiple Phytotoxins Produced by Fusarium virguliforme Including a Phytotoxic Effector (FvNIS1) Associated With Sudden Death Syndrome Foliar Symptoms. | Chang HX et al. | β | 2016 | β |
| Identity-by-descent estimation with population- and pedigree-based imputation in admixed family data. | Saad M et al. | β | 2016 | β |
| Improved imputation accuracy in Hispanic/Latino populations with larger and more diverse reference panels: applications in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL). | Nelson SC et al. | β | 2016 | β |
| Imputation Accuracy from Low to Moderate Density Single Nucleotide Polymorphism Chips in a Thai Multibreed Dairy Cattle Population. | Jattawa D et al. | β | 2016 | β |
| Imputing Genotypes in Biallelic Populations from Low-Coverage Sequence Data. | Fragoso CA et al. | β | 2016 | β |
| Imputing Variants in HLA-DR Beta Genes Reveals That HLA-DRB1 Is Solely Associated with Rheumatoid Arthritis and Systemic Lupus Erythematosus. | Kim K et al. | β | 2016 | β |
| Incorporating parent-of-origin effects in whole-genome prediction of complex traits. | Hu Y et al. | β | 2016 | β |
| Linkage disequilibrium, persistence of phase, and effective population size in Spanish local beef cattle breeds assessed through a high-density single nucleotide polymorphism chip. | CaΓ±as-Γlvarez JJ et al. | β | 2016 | β |
| Model training across multiple breeding cycles significantly improves genomic prediction accuracy in rye (Secale cereale L.). | Auinger HJ et al. | β | 2016 | β |
| "Noisy beets": impact of phenotyping errors on genomic predictions for binary traits in Beta vulgaris. | Biscarini F et al. | β | 2016 | β |
| On the performance of tests for the detection of signatures of selection: a case study with the Spanish autochthonous beef cattle populations. | GonzΓ‘lez-RodrΓguez A et al. | β | 2016 | β |
| Opportunities for genomic prediction for fertility using endocrine and classical fertility traits in dairy cattle. | Tenghe AM et al. | β | 2016 | β |
| Reference-based phasing using the Haplotype Reference Consortium panel. | Loh PR et al. | β | 2016 | β |
| Reveel: large-scale population genotyping using low-coverage sequencing data. | Huang L et al. | β | 2016 | β |
| Rigorous tests of gene-environment interactions in a lab study of the oxytocin receptor gene (OXTR), alcohol exposure, and aggression. | LoParo D et al. | β | 2016 | β |
| Sequence-based Association Analysis Reveals an MGST1 eQTL with Pleiotropic Effects on Bovine Milk Composition. | Littlejohn MD et al. | β | 2016 | β |
| Sequence variants selected from a multi-breed GWAS can improve the reliability of genomic predictions in dairy cattle. | van den Berg I et al. | β | 2016 | β |
| Sparse single-step method for genomic evaluation in pigs. | Ostersen T et al. | β | 2016 | β |
| Structured Matrix Completion with Applications to Genomic Data Integration. | Cai T et al. | β | 2016 | β |
| Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle. | Raven LA et al. | β | 2016 | β |
| Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls. | Hu YJ et al. | β | 2016 | β |
| The contribution of rare variation to prostate cancer heritability. | Mancuso N et al. | β | 2016 | β |
| The Landscape of Realized Homologous Recombination in Pathogenic Bacteria. | Yahara K et al. | β | 2016 | β |
| The Prediction of the Expected Current Selection Coefficient of Single Nucleotide Polymorphism Associated with Holstein Milk Yield, Fat and Protein Contents. | Lee YS et al. | β | 2016 | β |
| Three new pancreatic cancer susceptibility signals identified on chromosomes 1q32.1, 5p15.33 and 8q24.21. | Zhang M et al. | β | 2016 | β |
| Using single-step genomic best linear unbiased predictor to enhance the mitigation of seasonal losses due to heat stress in pigs. | Fragomeni BO et al. | β | 2016 | β |
| Validation of Deleterious Mutations in Vorderwald Cattle. | Reinartz S et al. | β | 2016 | β |
| Variants within the SP110 nuclear body protein modify risk of canine degenerative myelopathy. | Ivansson EL et al. | β | 2016 | β |
| Whole-exome sequencing of over 4100 men of African ancestry and prostate cancer risk. | Rand KA et al. | β | 2016 | β |
| Accuracy of genome-enabled prediction exploring purebred and crossbred pig populations. | Veroneze R et al. | β | 2015 | β |
| Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding. | Grenier C et al. | β | 2015 | β |
| Accuracy of imputation using the most common sires as reference population in layer chickens. | Heidaritabar M et al. | β | 2015 | β |
| A computationally efficient algorithm for genomic prediction using a Bayesian model. | Wang T et al. | β | 2015 | β |
| A genome scan for selection signatures in pigs. | Ma Y et al. | β | 2015 | β |
| A guide to genome-wide association analysis and post-analytic interrogation. | Reed E et al. | β | 2015 | β |
| A GWAS assessment of the contribution of genomic imprinting to the variation of body mass index in mice. | Hu Y et al. | β | 2015 | β |
| A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis. | Chen R et al. | β | 2015 | β |
| A large-scale genetic analysis reveals a strong contribution of the HLA class II region to giant cell arteritis susceptibility. | Carmona FD et al. | β | 2015 | β |
| A New Genomewide Association Meta-Analysis of Alcohol Dependence. | Zuo L et al. | β | 2015 | β |
| A Ranking Approach to Genomic Selection. | Blondel M et al. | β | 2015 | β |
| A Scale-Corrected Comparison of Linkage Disequilibrium Levels between Genic and Non-Genic Regions. | Berger S et al. | β | 2015 | β |
| A schizophrenia-associated HLA locus affects thalamus volume and asymmetry. | Brucato N et al. | β | 2015 | β |
| Association analysis for udder health based on SNP-panel and sequence data in Danish Holsteins. | Wu X et al. | β | 2015 | β |
| Association of substance dependence phenotypes in the COGA sample. | Wetherill L et al. | β | 2015 | β |
| Bootstrap study of genome-enabled prediction reliabilities using haplotype blocks across Nordic Red cattle breeds. | Cuyabano BC et al. | β | 2015 | β |
| Case-control genome-wide association study of persistent attention-deficit hyperactivity disorder identifies FBXO33 as a novel susceptibility gene for the disorder. | SΓ‘nchez-Mora C et al. | β | 2015 | β |
| Composite Selection Signals for Complex Traits Exemplified Through Bovine Stature Using Multibreed Cohorts of European and African Bos taurus. | Randhawa IA et al. | β | 2015 | β |
| Conservatism and novelty in the genetic architecture of adaptation in Heliconius butterflies. | Huber B et al. | β | 2015 | β |
| Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracy. | Bolormaa S et al. | β | 2015 | β |
| Detection of selection signatures in dairy and beef cattle using high-density genomic information. | Zhao F et al. | β | 2015 | β |
| Detection of Selection Signatures on the X Chromosome in Three Sheep Breeds. | Zhu C et al. | β | 2015 | β |
| Discovery and characterization of Alu repeat sequences via precise local read assembly. | Wildschutte JH et al. | β | 2015 | β |
| Effective population size, extended linkage disequilibrium and signatures of selection in the rare dog breed lundehund. | Pfahler S et al. | β | 2015 | β |
| Effect of reference population size and available ancestor genotypes on imputation of Mexican Holstein genotypes. | GarcΓa-Ruiz A et al. | β | 2015 | β |
| Exact Inference for Hardy-Weinberg Proportions with Missing Genotypes: Single and Multiple Imputation. | Graffelman J et al. | β | 2015 | β |
| Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression. | Li MJ et al. | β | 2015 | β |
| Gene-based mapping and pathway analysis of metabolic traits in dairy cows. | Ha NT et al. | β | 2015 | β |
| Genetic dissection of milk yield traits and mastitis resistance quantitative trait loci on chromosome 20 in dairy cattle. | Kadri NK et al. | β | 2015 | β |
| Genetic evidence for PLASMINOGEN as a shared genetic risk factor of coronary artery disease and periodontitis. | Schaefer AS et al. | β | 2015 | β |
| Genetic loci associated with circulating levels of very long-chain saturated fatty acids. | Lemaitre RN et al. | β | 2015 | β |
| Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. | Mozaffarian D et al. | β | 2015 | β |
| Genetic variants in the upstream region of activin receptor IIA are associated with female fertility in Japanese Black cattle. | Sasaki S et al. | β | 2015 | β |
| Genetic variation in the HLA region is associated with susceptibility to herpes zoster. | Crosslin DR et al. | β | 2015 | β |
| Genetic variation predicts serum lycopene concentrations in a multiethnic population of postmenopausal women. | Zubair N et al. | β | 2015 | β |
| Genome-wide analysis correlates Ayurveda Prakriti. | Govindaraj P et al. | β | 2015 | β |
| Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity. | Chauhan L et al. | β | 2015 | β |
| Genome-wide association and epistasis studies unravel the genetic architecture of sudden death syndrome resistance in soybean. | Zhang J et al. | β | 2015 | β |
| Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations. | Hayes MG et al. | β | 2015 | β |
| Genome-wide association QTL mapping for teat number in a purebred population of Duroc pigs. | Arakawa A et al. | β | 2015 | β |
| Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens. | Yi G et al. | β | 2015 | β |
| Genome-wide association study for calving performance using high-density genotypes in dairy and beef cattle. | Purfield DC et al. | β | 2015 | β |
| Genome-wide association study for female fertility in Nordic Red cattle. | HΓΆglund JK et al. | β | 2015 | β |
| Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm. | Zhang J et al. | β | 2015 | β |
| Genome-wide association study identifies variants at 16p13 associated with survival in multiple myeloma patients. | Ziv E et al. | β | 2015 | β |
| Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy. | Kouri N et al. | β | 2015 | β |
| Genome-wide association study of IgG1 responses to the choline-binding protein PspC of Streptococcus pneumoniae. | Anderson D et al. | β | 2015 | β |
| Genome-wide association study of selenium concentrations. | Cornelis MC et al. | β | 2015 | β |
| Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols. | Lehmann DS et al. | β | 2015 | β |
| Genome-wide association study on legendre random regression coefficients for the growth and feed intake trajectory on Duroc Boars. | Howard JT et al. | β | 2015 | β |
| Genome-wide association study revealed a promising region and candidate genes for eggshell quality in an F2 resource population. | Sun C et al. | β | 2015 | β |
| Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep. | Al-Mamun HA et al. | β | 2015 | β |
| Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis. | Huang X et al. | β | 2015 | β |
| Genomic data as the "hitchhiker's guide" to cattle adaptation: tracking the milestones of past selection in the bovine genome. | Utsunomiya YT et al. | β | 2015 | β |
| Genomic evidence for role of inversion 3RP of Drosophila melanogaster in facilitating climate change adaptation. | Rane RV et al. | β | 2015 | β |
| Genomic prediction of dry matter intake in dairy cattle from an international data set consisting of research herds in Europe, North America, and Australasia. | de Haas Y et al. | β | 2015 | β |
| Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle. | van Binsbergen R et al. | β | 2015 | β |
| Genomics of divergence along a continuum of parapatric population differentiation. | Feulner PG et al. | β | 2015 | β |
| GenPlay Multi-Genome, a tool to compare and analyze multiple human genomes in a graphical interface. | Lajugie J et al. | β | 2015 | β |
| Haplotype phasing and inheritance of copy number variants in nuclear families. | Palta P et al. | β | 2015 | β |
| Heterozygous genome assembly via binary classification of homologous sequence. | Bodily PM et al. | β | 2015 | β |
| High-density linkage map construction and mapping of seed trait QTLs in chickpea (Cicer arietinum L.) using Genotyping-by-Sequencing (GBS). | Verma S et al. | β | 2015 | β |
| High-density mapping of the MHC identifies a shared role for HLA-DRB1*01:03 in inflammatory bowel diseases and heterozygous advantage in ulcerative colitis. | Goyette P et al. | β | 2015 | β |
| Homozygous haplotype deficiency reveals deleterious mutations compromising reproductive and rearing success in cattle. | Pausch H et al. | β | 2015 | β |
| Identification of candidate genes for prostate cancer-risk SNPs utilizing a normal prostate tissue eQTL data set. | Thibodeau SN et al. | β | 2015 | β |
| Identification of genomic regions associated with female fertility in Danish Jersey using whole genome sequence data. | HΓΆglund JK et al. | β | 2015 | β |
| Impact of QTL properties on the accuracy of multi-breed genomic prediction. | Wientjes YC et al. | β | 2015 | β |
| Implementing meta-analysis from genome-wide association studies for pork quality traits. | Bernal Rubio YL et al. | β | 2015 | β |
| Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel. | Huang J et al. | β | 2015 | β |
| Improving resistance to the European corn borer: a comprehensive study in elite maize using QTL mapping and genome-wide prediction. | Foiada F et al. | β | 2015 | β |
| Imputation accuracy is robust to cattle reference genome updates. | Milanesi M et al. | β | 2015 | β |
| Imputation-based population genetics analysis of Plasmodium falciparum malaria parasites. | Samad H et al. | β | 2015 | β |
| Imputation of class I and II HLA loci using high-density SNPs from ImmunoChip and their associations with Kawasaki disease in family-based study. | Shrestha S et al. | β | 2015 | β |
| Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels. | Xiang T et al. | β | 2015 | β |
| Including different groups of genotyped females for genomic prediction in a Nordic Jersey population. | Gao H et al. | β | 2015 | β |
| Including overseas performance information in genomic evaluations of Australian dairy cattle. | Haile-Mariam M et al. | β | 2015 | β |
| Integrative analysis of sequencing and array genotype data for discovering disease associations with rare mutations. | Hu YJ et al. | β | 2015 | β |
| Joint genome-wide association study for milk fatty acid traits in Chinese and Danish Holstein populations. | Li X et al. | β | 2015 | β |
| Large multiallelic copy number variations in humans. | Handsaker RE et al. | β | 2015 | β |
| Linkage disequilibrium in crossbred and pure line chickens. | Fu W et al. | β | 2015 | β |
| Loci associated with adult stature also affect calf birth survival in cattle. | Sahana G et al. | β | 2015 | β |
| Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. | He M et al. | β | 2015 | β |
| minimac2: faster genotype imputation. | Fuchsberger C et al. | β | 2015 | β |
| Model-based verification of hypotheses on the origin of modern Japanese revisited by Bayesian inference based on genome-wide SNP data. | Nakagome S et al. | β | 2015 | β |
| Molgenis-impute: imputation pipeline in a box. | Kanterakis A et al. | β | 2015 | β |
| Multi-allelic haplotype model based on genetic partition for genomic prediction and variance component estimation using SNP markers. | Da Y | β | 2015 | β |
| Odintifier--A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing. | Samaniego Castruita JA et al. | β | 2015 | β |
| One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies. | Yuan S et al. | β | 2015 | β |
| Partitioning of genomic variance reveals biological pathways associated with udder health and milk production traits in dairy cattle. | Edwards SM et al. | β | 2015 | β |
| PBAP: a pipeline for file processing and quality control of pedigree data with dense genetic markers. | Nato AQ et al. | β | 2015 | β |
| Performance of genotype imputation for low frequency and rare variants from the 1000 genomes. | Zheng HF et al. | β | 2015 | β |
| Peroxisome proliferator-activated receptors Ξ± and Ξ³ are linked with alcohol consumption in mice and withdrawal and dependence in humans. | Blednov YA et al. | β | 2015 | β |
| Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the south-eastern United States and Caribbean Islands. | Kao JY et al. | β | 2015 | β |
| Population-specific genotype imputations using minimac or IMPUTE2. | van Leeuwen EM et al. | β | 2015 | β |
| Prediction of Genes Related to Positive Selection Using Whole-Genome Resequencing in Three Commercial Pig Breeds. | Kim H et al. | β | 2015 | β |
| PRIMAL: Fast and accurate pedigree-based imputation from sequence data in a founder population. | Livne OE et al. | β | 2015 | β |
| Promising Loci and Genes for Yolk and Ovary Weight in Chickens Revealed by a Genome-Wide Association Study. | Sun C et al. | β | 2015 | β |
| Properties of different selection signature statistics and a new strategy for combining them. | Ma Y et al. | β | 2015 | β |
| Proper Use of Allele-Specific Expression Improves Statistical Power for <i>cis</i>-eQTL Mapping with RNA-Seq Data. | Hu YJ et al. | β | 2015 | β |
| Prospective association of a genetic risk score and lifestyle intervention with cardiovascular morbidity and mortality among individuals with type 2 diabetes: the Look AHEAD randomised controlled trial. | Look AHEAD Research Group | β | 2015 | β |
| Prospects and limits of marker imputation in quantitative genetic studies in European elite wheat (Triticum aestivum L.). | He S et al. | β | 2015 | β |
| Proteasome system dysregulation and treatment resistance mechanisms in major depressive disorder. | Minelli A et al. | β | 2015 | β |
| PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols. | Kanterakis A et al. | β | 2015 | β |
| Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction. | BrΓΈndum RF et al. | β | 2015 | β |
| Rapid and inexpensive whole-genome genotyping-by-sequencing for crossover localization and fine-scale genetic mapping. | Rowan BA et al. | β | 2015 | β |
| Rare Variants in Transcript and Potential Regulatory Regions Explain a Small Percentage of the Missing Heritability of Complex Traits in Cattle. | Gonzalez-Recio O et al. | β | 2015 | β |
| Relatedness in the post-genomic era: is it still useful? | Speed D et al. | β | 2015 | β |
| Selection for silage yield and composition did not affect genomic diversity within the Wisconsin Quality Synthetic maize population. | Lorenz AJ et al. | β | 2015 | β |
| Selection of haplotype variables from a high-density marker map for genomic prediction. | Cuyabano BC et al. | β | 2015 | β |
| Short communication: Validation of 4 candidate causative trait variants in 2 cattle breeds using targeted sequence imputation. | Pausch H et al. | β | 2015 | β |
| Significant association between rare IPO11-HTR1A variants and attention deficit hyperactivity disorder in Caucasians. | Zuo L et al. | β | 2015 | β |
| Single-step genomic model improved reliability and reduced the bias of genomic predictions in Danish Jersey. | Ma P et al. | β | 2015 | β |
| Strategies for genotype imputation in composite beef cattle. | Chud TC et al. | β | 2015 | β |
| Systematic assessment of imputation performance using the 1000 Genomes reference panels. | Liu Q et al. | β | 2015 | β |
| The genetic architecture of gene expression levels in wild baboons. | Tung J et al. | β | 2015 | β |
| The genetics of human autoimmune disease: A perspective on progress in the field and future directions. | Seldin MF | β | 2015 | β |
| The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response. | Biernacka JM et al. | β | 2015 | β |
| The mammalian cervical vertebrae blueprint depends on the T (brachyury) gene. | Kromik A et al. | β | 2015 | β |
| Thyroid cancer GWAS identifies 10q26.12 and 6q14.1 as novel susceptibility loci and reveals genetic heterogeneity among populations. | Mancikova V et al. | β | 2015 | β |
| Tissue-specific effects of genetic and epigenetic variation on gene regulation and splicing. | Gutierrez-Arcelus M et al. | β | 2015 | β |
| Two molecular measures of relatedness based on haplotype sharing. | Edwards D | β | 2015 | β |
| Using a family-based structure to detect the effects of genomic inbreeding on embryo viability in Holstein cattle. | Bjelland DW et al. | β | 2015 | β |
| Using selection index theory to estimate consistency of multi-locus linkage disequilibrium across populations. | Wientjes YC et al. | β | 2015 | β |
| Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows. | Aliloo H et al. | β | 2015 | β |
| When Does Choice of Accuracy Measure Alter Imputation Accuracy Assessments? | Ramnarine S et al. | β | 2015 | β |
| Whole-genome resequencing analyses of five pig breeds, including Korean wild and native, and three European origin breeds. | Choi JW et al. | β | 2015 | β |
| Accuracies of genomically estimated breeding values from pure-breed and across-breed predictions in Australian beef cattle. | Boerner V et al. | β | 2014 | β |
| Accuracy of estimation of genomic breeding values in pigs using low-density genotypes and imputation. | Badke YM et al. | β | 2014 | β |
| Accuracy of genome-wide imputation in Braford and Hereford beef cattle. | Piccoli ML et al. | β | 2014 | β |
| Accuracy of genotype imputation in Nelore cattle. | Carvalheiro R et al. | β | 2014 | β |
| Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle. | van Binsbergen R et al. | β | 2014 | β |
| A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes. | Moltke I et al. | β | 2014 | β |
| Adaptive combination of P-values for family-based association testing with sequence data. | Lin WY | β | 2014 | β |
| A general approach for haplotype phasing across the full spectrum of relatedness. | O'Connell J et al. | β | 2014 | β |
| A genome-wide association meta-analysis of preschool internalizing problems. | Benke KS et al. | β | 2014 | β |
| A genome-wide association study reveals a quantitative trait locus for age at first calving in delta/notch-like EGF repeat containing on chromosome 2 in Japanese Black cattle. | Sasaki S et al. | β | 2014 | β |
| Allelic expression analysis in the brain suggests a role for heterogeneous insults affecting epigenetic processes in autism spectrum disorders. | Ben-David E et al. | β | 2014 | β |
| A low-frequency variant in MAPK14 provides mechanistic evidence of a link with myeloperoxidase: a prognostic cardiovascular risk marker. | Waterworth DM et al. | β | 2014 | β |
| An enhancer polymorphism at the cardiomyocyte intercalated disc protein NOS1AP locus is a major regulator of the QT interval. | Kapoor A et al. | β | 2014 | β |
| A new approach for efficient genotype imputation using information from relatives. | Sargolzaei M et al. | β | 2014 | β |
| A new genotype imputation method with tolerance to high missing rate and rare variants. | Yang Y et al. | β | 2014 | β |
| An independent validation association study of carcass quality, shear force, intramuscular fat percentage and omega-3 polyunsaturated fatty acid content with gene markers in Australian lamb. | Knight MI et al. | β | 2014 | β |
| A nonsense mutation in PLD4 is associated with a zinc deficiency-like syndrome in Fleckvieh cattle. | Jung S et al. | β | 2014 | β |
| A nonsense mutation in TMEM95 encoding a nondescript transmembrane protein causes idiopathic male subfertility in cattle. | Pausch H et al. | β | 2014 | β |
| A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. | Unterseer S et al. | β | 2014 | β |
| A quantitative trait locus on Bos taurus autosome 17 explains a large proportion of the genetic variation in de novo synthesized milk fatty acids. | Duchemin SI et al. | β | 2014 | β |
| A recessive genetic model and runs of homozygosity in major depressive disorder. | Power RA et al. | β | 2014 | β |
| Association between multiple sclerosis risk-associated SNPs and relapse and disability--a prospective cohort study. | Lin R et al. | β | 2014 | β |
| Association of Parkinson disease risk loci with mild parkinsonian signs in older persons. | Shulman JM et al. | β | 2014 | β |
| Association studies with imputed variants using expectation-maximization likelihood-ratio tests. | Huang KC et al. | β | 2014 | β |
| BamBam: genome sequence analysis tools for biologists. | Page JT et al. | β | 2014 | β |
| Bioinformatics challenges in genome-wide association studies (GWAS). | De R et al. | β | 2014 | β |
| Bipolar polygenic loading and bipolar spectrum features in major depressive disorder. | Wiste A et al. | β | 2014 | β |
| Characterization of genome-methylome interactions in 22 nuclear pedigrees. | Plongthongkum N et al. | β | 2014 | β |
| Characterizing bias in population genetic inferences from low-coverage sequencing data. | Han E et al. | β | 2014 | β |
| Classic selective sweeps revealed by massive sequencing in cattle. | Qanbari S et al. | β | 2014 | β |
| Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. | Goldstein JI et al. | β | 2014 | β |
| Combining family- and population-based imputation data for association analysis of rare and common variants in large pedigrees. | Saad M et al. | β | 2014 | β |
| Common variants in the HLA-DQ region confer susceptibility to idiopathic achalasia. | Gockel I et al. | β | 2014 | β |
| Comparison of genomic predictions using genomic relationship matrices built with different weighting factors to account for locus-specific variances. | Su G et al. | β | 2014 | β |
| Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy. | Bouwman AC et al. | β | 2014 | β |
| Controlling for population structure and genotyping platform bias in the eMERGE multi-institutional biobank linked to electronic health records. | Crosslin DR et al. | β | 2014 | β |
| Deciphering ADME genetic data using an automated haplotype approach. | Guo Y et al. | β | 2014 | β |
| Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production. | Rincent R et al. | β | 2014 | β |
| Determining causality and consequence of expression quantitative trait loci. | Battle A et al. | β | 2014 | β |
| Dissection of additive genetic variability for quantitative traits in chickens using SNP markers. | Abdollahi-Arpanahi R et al. | β | 2014 | β |
| Effective filtering strategies to improve data quality from population-based whole exome sequencing studies. | Carson AR et al. | β | 2014 | β |
| Effect of allele frequencies, effect sizes and number of markers on prediction of quantitative traits in chickens. | Abdollahi-Arpanahi R et al. | β | 2014 | β |
| Effect of genotype imputation on genome-enabled prediction of complex traits: an empirical study with mice data. | Felipe VP et al. | β | 2014 | β |
| Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multiparental crosses. | Huang BE et al. | β | 2014 | β |
| Efficient inference of recombination hot regions in bacterial genomes. | Yahara K et al. | β | 2014 | β |
| Estimation of genomic breeding values for residual feed intake in a multibreed cattle population. | Khansefid M et al. | β | 2014 | β |
| Estimation of U.S. Yorkshire breed composition using genomic data. | Huang Y et al. | β | 2014 | β |
| Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications. | Calus MP et al. | β | 2014 | β |
| Excess of homozygosity in the major histocompatibility complex in schizophrenia. | Mukherjee S et al. | β | 2014 | β |
| Expression variants of the lipogenic AGPAT6 gene affect diverse milk composition phenotypes in Bos taurus. | Littlejohn MD et al. | β | 2014 | β |
| Extent of linkage disequilibrium, consistency of gametic phase, and imputation accuracy within and across Canadian dairy breeds. | Larmer SG et al. | β | 2014 | β |
| Family-based association analysis of alcohol dependence criteria and severity. | Wetherill L et al. | β | 2014 | β |
| Fast and accurate imputation of summary statistics enhances evidence of functional enrichment. | Pasaniuc B et al. | β | 2014 | β |
| Fast pairwise IBD association testing in genome-wide association studies. | Han B et al. | β | 2014 | β |
| Fine mapping of a quantitative trait locus for bovine milk fat composition on Bos taurus autosome 19. | Bouwman AC et al. | β | 2014 | β |
| Fine mapping QTL for female fertility on BTA04 and BTA13 in dairy cattle using HD SNP and sequence data. | HΓΆglund JK et al. | β | 2014 | β |
| Fine mapping seronegative and seropositive rheumatoid arthritis to shared and distinct HLA alleles by adjusting for the effects of heterogeneity. | Han B et al. | β | 2014 | β |
| Functionally reciprocal mutations of the prolactin signalling pathway define hairy and slick cattle. | Littlejohn MD et al. | β | 2014 | β |
| Gene-gene and gene-environment interactions in ulcerative colitis. | Wang MH et al. | β | 2014 | β |
| Genetic association analysis of 300 genes identifies a risk haplotype in SLC18A2 for post-traumatic stress disorder in two independent samples. | Solovieff N et al. | β | 2014 | β |
| Genetic association between germline JAK2 polymorphisms and myeloproliferative neoplasms in Hong Kong Chinese population: a case-control study. | Koh SP et al. | β | 2014 | β |
| Genetic background drives transcriptional variation in human induced pluripotent stem cells. | Rouhani F et al. | β | 2014 | β |
| Genetic risk score for prediction of newborn adiposity and large-for-gestational-age birth. | Chawla R et al. | β | 2014 | β |
| Genome-wide association analysis identifies six new loci associated with forced vital capacity. | Loth DW et al. | β | 2014 | β |
| Genome-wide association studies identify locus on 6p21 influencing lung function in the Korean population. | Kim WJ et al. | β | 2014 | β |
| Genome-wide association study identifies new disease loci for isolated clubfoot. | Zhang TX et al. | β | 2014 | β |
| Genome-wide association study identifies phospholipase C zeta 1 (PLCz1) as a stallion fertility locus in Hanoverian warmblood horses. | Schrimpf R et al. | β | 2014 | β |
| Genome-wide association study of bipolar disorder in Canadian and UK populations corroborates disease loci including SYNE1 and CSMD1. | Xu W et al. | β | 2014 | β |
| Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium. | Guan W et al. | β | 2014 | β |
| Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. | Zeng Z et al. | β | 2014 | β |
| Genome-wide association study of susceptibility to infection by Mycobacterium avium subspecies paratuberculosis in Holstein cattle. | Alpay F et al. | β | 2014 | β |
| Genome-wide association study using high-density single nucleotide polymorphism arrays and whole-genome sequences for clinical mastitis traits in dairy cattle. | Sahana G et al. | β | 2014 | β |
| Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke. | Williams SR et al. | β | 2014 | β |
| Genome-wide QTL mapping of nine body composition and bone mineral density traits in pigs. | Rothammer S et al. | β | 2014 | β |
| Genome-wide scans of genetic variants for psychophysiological endophenotypes: a methodological overview. | Iacono WG et al. | β | 2014 | β |
| Genome-wide SNP analysis reveals population structure and demographic history of the ryukyu islanders in the southern part of the Japanese archipelago. | Sato T et al. | β | 2014 | β |
| Genomic prediction in French Charolais beef cattle using high-density single nucleotide polymorphism markers. | Gunia M et al. | β | 2014 | β |
| Genomic prediction in Japanese Black cattle: application of a single-step approach to beef cattle. | Onogi A et al. | β | 2014 | β |
| Genomic prediction of genetic merit using LD-based haplotypes in the Nordic Holstein population. | Cuyabano BC et al. | β | 2014 | β |
| Genomic predictions based on a joint reference population for the Nordic Red cattle breeds. | Zhou L et al. | β | 2014 | β |
| Genomic relationships based on X chromosome markers and accuracy of genomic predictions with and without X chromosome markers. | Su G et al. | β | 2014 | β |
| Genomic selection for recovery of original genetic background from hybrids of endangered and common breeds. | Amador C et al. | β | 2014 | β |
| Genotypic discrepancies arising from imputation. | Hinrichs AL et al. | β | 2014 | β |
| Haplotype association analysis of combining unrelated case-control and triads with consideration of population stratification. | Wen SH et al. | β | 2014 | β |
| Haplotype-based approach for noninvasive prenatal diagnosis of congenital adrenal hyperplasia by maternal plasma DNA sequencing. | Ma D et al. | β | 2014 | β |
| HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data. | Berger E et al. | β | 2014 | β |
| Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study. | Malone SM et al. | β | 2014 | β |
| HLA-DRB1*07:01 is associated with a higher risk of asparaginase allergies. | Fernandez CA et al. | β | 2014 | β |
| Identification of genetic variants associated with capecitabine-induced hand-foot syndrome through integration of patient and cell line genomic analyses. | Wheeler HE et al. | β | 2014 | β |
| Identification of selection footprints on the X chromosome in pig. | Ma Y et al. | β | 2014 | β |
| Identifying genetic relatives without compromising privacy. | He D et al. | β | 2014 | β |
| Identifying genetic variants for heart rate variability in the acetylcholine pathway. | Riese H et al. | β | 2014 | β |
| Identity-by-descent graphs offer a flexible framework for imputation and both linkage and association analyses. | Blue EM et al. | β | 2014 | β |
| Impact of reference population on accuracy of imputation from 6K to 50K single nucleotide polymorphism chips in purebred and crossbreed beef cattle. | Ventura RV et al. | β | 2014 | β |
| Improving the accuracy of genomic prediction in Chinese Holstein cattle by using one-step blending. | Li X et al. | β | 2014 | β |
| Imputation and quality control steps for combining multiple genome-wide datasets. | Verma SS et al. | β | 2014 | β |
| Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33. | Wang Z et al. | β | 2014 | β |
| Imputation-based assessment of next generation rare exome variant arrays. | Martin AR et al. | β | 2014 | β |
| Imputation of genotypes from low density (50,000 markers) to high density (700,000 markers) of cows from research herds in Europe, North America, and Australasia using 2 reference populations. | Pryce JE et al. | β | 2014 | β |
| Imputation of sequence level genotypes in the Franches-Montagnes horse breed. | Frischknecht M et al. | β | 2014 | β |
| Imputation of ungenotyped parental genotypes in dairy and beef cattle from progeny genotypes. | Berry DP et al. | β | 2014 | β |
| Incorporating heifer feed efficiency in the Australian selection index using genomic selection. | Gonzalez-Recio O et al. | β | 2014 | β |
| Increasing imputation and prediction accuracy for Chinese Holsteins using joint Chinese-Nordic reference population. | Ma P et al. | β | 2014 | β |
| In frame exon skipping in UBE3B is associated with developmental disorders and increased mortality in cattle. | Venhoranta H et al. | β | 2014 | β |
| Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel. | Delaneau O et al. | β | 2014 | β |
| Introduction to deep sequencing and its application to drug addiction research with a focus on rare variants. | Wang S et al. | β | 2014 | β |
| Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize. | Giraud H et al. | β | 2014 | β |
| Mega2: validated data-reformatting for linkage and association analyses. | Baron RV et al. | β | 2014 | β |
| Meta-analysis of loci associated with age at natural menopause in African-American women. | Chen CT et al. | β | 2014 | β |
| Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians. | Chen P et al. | β | 2014 | β |
| Natural variations and genome-wide association studies in crop plants. | Huang X et al. | β | 2014 | β |
| On the performance of multiple imputation based on chained equations in tackling missing data of the African Ξ±3.7 -globin deletion in a malaria association study. | SepΓΊlveda N et al. | β | 2014 | β |
| PedBLIMP: extending linear predictors to impute genotypes in pedigrees. | Chen W et al. | β | 2014 | β |
| Performance of HLA allele prediction methods in African Americans for class II genes HLA-DRB1, -DQB1, and -DPB1. | Levin AM et al. | β | 2014 | β |
| Pleiotropic effects of lipid genes on plasma glucose, HbA1c, and HOMA-IR levels. | Li N et al. | β | 2014 | β |
| Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia. | Ruderfer DM et al. | β | 2014 | β |
| Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations. | Evans LM et al. | β | 2014 | β |
| Power of family-based association designs to detect rare variants in large pedigrees using imputed genotypes. | Saad M et al. | β | 2014 | β |
| Premorbid risk factors for major depressive disorder: are they associated with early onset and recurrent course? | Wilson S et al. | β | 2014 | β |
| Prioritizing animals for dense genotyping in order to impute missing genotypes of sparsely genotyped animals. | Yu X et al. | β | 2014 | β |
| QTLs associated with dry matter intake, metabolic mid-test weight, growth and feed efficiency have little overlap across 4 beef cattle studies. | Saatchi M et al. | β | 2014 | β |
| Rare missense variants in POT1 predispose to familial cutaneous malignant melanoma. | Shi J et al. | β | 2014 | β |
| Rare-variant association analysis: study designs and statistical tests. | Lee S et al. | β | 2014 | β |
| Recovering power in association mapping panels with variable levels of linkage disequilibrium. | Rincent R et al. | β | 2014 | β |
| Repeated landmass reformation limits diversification in the widespread littoral zone mosquito Anopheles sundaicus sensu lato in the Indo-Oriental Region. | Zarowiecki M et al. | β | 2014 | β |
| Residual feed intake of lactating Holstein-Friesian cows predicted from high-density genotypes and phenotyping of growing heifers. | Davis SR et al. | β | 2014 | β |
| Results of a "GWAS plus:" general cognitive ability is substantially heritable and massively polygenic. | Kirkpatrick RM et al. | β | 2014 | β |
| Short communication: Validation of genomic breeding value predictions for feed intake and feed efficiency traits. | Pryce JE et al. | β | 2014 | β |
| Single-cell genomics for dissection of complex malaria infections. | Nair S et al. | β | 2014 | β |
| Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle. | BrΓΈndum RF et al. | β | 2014 | β |
| Targeted resequencing of GWAS loci reveals novel genetic variants for milk production traits. | Jiang L et al. | β | 2014 | β |
| The genetic basis of chronic mountain sickness. | Ronen R et al. | β | 2014 | β |
| The HLA-DRΞ²1 amino acid positions 11-13-26 explain the majority of SLE-MHC associations. | Kim K et al. | β | 2014 | β |
| The influence of admixture and consanguinity on population genetic diversity in Middle East. | Yang X et al. | β | 2014 | β |
| The population genomic landscape of human genetic structure, admixture history and local adaptation in Peninsular Malaysia. | Deng L et al. | β | 2014 | β |
| The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts. | Wagner JR et al. | β | 2014 | β |
| The utility of low-density genotyping for imputation in the Thoroughbred horse. | Corbin LJ et al. | β | 2014 | β |
| Usefulness of multiparental populations of maize (Zea mays L.) for genome-based prediction. | Lehermeier C et al. | β | 2014 | β |
| Value of Mendelian laws of segregation in families: data quality control, imputation, and beyond. | Blue EM et al. | β | 2014 | β |
| Variant association tools for quality control and analysis of large-scale sequence and genotyping array data. | Wang GT et al. | β | 2014 | β |
| Whole-genome association study of fatty acid composition in a diverse range of beef cattle breeds. | Kelly MJ et al. | β | 2014 | β |
| Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. | Daetwyler HD et al. | β | 2014 | β |
| Within- and across-breed imputation of high-density genotypes in dairy and beef cattle from medium- and low-density genotypes. | Berry DP et al. | β | 2014 | β |
| Accuracy of genomic prediction for milk production traits in the Chinese Holstein population using a reference population consisting of cows. | Ding X et al. | β | 2013 | β |
| Accuracy of genomic prediction using an evenly spaced, low-density single nucleotide polymorphism panel in broiler chickens. | Wang C et al. | β | 2013 | β |
| A discovery study of daunorubicin induced cardiotoxicity in a sample of acute myeloid leukemia patients prioritizes P450 oxidoreductase polymorphisms as a potential risk factor. | Lubieniecka JM et al. | β | 2013 | β |
| A genome-wide association study for somatic cell score using the Illumina high-density bovine beadchip identifies several novel QTL potentially related to mastitis susceptibility. | Meredith BK et al. | β | 2013 | β |
| A genome-wide scan for signatures of differential artificial selection in ten cattle breeds. | Rothammer S et al. | β | 2013 | β |
| A genome-wide survey of transgenerational genetic effects in autism. | Tsang KM et al. | β | 2013 | β |
| A novel approach to detect cumulative genetic effects and genetic interactions in Crohn's disease. | Wang MH et al. | β | 2013 | β |
| A primer for disease gene prioritization using next-generation sequencing data. | Wang S et al. | β | 2013 | β |
| Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage. | Jansen S et al. | β | 2013 | β |
| Assets of imputation to ultra-high density for productive and functional traits. | JimΓ©nez-Montero JA et al. | β | 2013 | β |
| Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls. | McLaren PJ et al. | β | 2013 | β |
| Complete genome phasing of family quartet by combination of genetic, physical and population-based phasing analysis. | Lajugie J et al. | β | 2013 | β |
| Defining the contribution of CNTNAP2 to autism susceptibility. | Sampath S et al. | β | 2013 | β |
| Determining ancestry proportions in complex admixture scenarios in South Africa using a novel proxy ancestry selection method. | Chimusa ER et al. | β | 2013 | β |
| Estimating population size via line graph reconstruction. | HalldΓ³rsson BV et al. | β | 2013 | β |
| Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects. | Patsopoulos NA et al. | β | 2013 | β |
| Gene genealogies for genetic association mapping, with application to Crohn's disease. | Burkett KM et al. | β | 2013 | β |
| Genetic and epigenetic regulation of human lincRNA gene expression. | Popadin K et al. | β | 2013 | β |
| Genome-wide analyses implicate 33 loci in heritable dog osteosarcoma, including regulatory variants near CDKN2A/B. | Karlsson EK et al. | β | 2013 | β |
| Genome-wide and local pattern of linkage disequilibrium and persistence of phase for 3 Danish pig breeds. | Wang L et al. | β | 2013 | β |
| Genome wide association studies for body conformation traits in the Chinese Holstein cattle population. | Wu X et al. | β | 2013 | β |
| Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci. | Kelly TN et al. | β | 2013 | β |
| Genome-wide association study of the five-factor model of personality in young Korean women. | Kim HN et al. | β | 2013 | β |
| Genome-wide prediction of traits with different genetic architecture through efficient variable selection. | Wimmer V et al. | β | 2013 | β |
| Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population. | Santure AW et al. | β | 2013 | β |
| Genomic selection using low density marker panels with application to a sire line in pigs. | Wellmann R et al. | β | 2013 | β |
| GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data. | Zhao K et al. | β | 2013 | β |
| GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. | Rietveld CA et al. | β | 2013 | β |
| HapFABIA: identification of very short segments of identity by descent characterized by rare variants in large sequencing data. | Hochreiter S | β | 2013 | β |
| Haplotype estimation using sequencing reads. | Delaneau O et al. | β | 2013 | β |
| Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies. | Hayes MG et al. | β | 2013 | β |
| Identity by descent: variation in meiosis, across genomes, and in populations. | Thompson EA | β | 2013 | β |
| Imputing amino acid polymorphisms in human leukocyte antigens. | Jia X et al. | β | 2013 | β |
| Inferring demographic history from a spectrum of shared haplotype lengths. | Harris K et al. | β | 2013 | β |
| iXora: exact haplotype inferencing and trait association. | Utro F et al. | β | 2013 | β |
| Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. | Yang WY et al. | β | 2013 | β |
| Natural selection in a bangladeshi population from the cholera-endemic ganges river delta. | Karlsson EK et al. | β | 2013 | β |
| Novel harmful recessive haplotypes identified for fertility traits in Nordic Holstein cattle. | Sahana G et al. | β | 2013 | β |
| Novel insights into the bovine polled phenotype and horn ontogenesis in Bovidae. | Allais-Bonnet A et al. | β | 2013 | β |
| On multi-marker tests for association in case-control studies. | Taub MA et al. | β | 2013 | β |
| Passive and active DNA methylation and the interplay with genetic variation in gene regulation. | Gutierrez-Arcelus M et al. | β | 2013 | β |
| Random Forests approach for identifying additive and epistatic single nucleotide polymorphisms associated with residual feed intake in dairy cattle. | Yao C et al. | β | 2013 | β |
| Rare SERINC2 variants are specific for alcohol dependence in individuals of European descent. | Zuo L et al. | β | 2013 | β |
| Re-ranking sequencing variants in the post-GWAS era for accurate causal variant identification. | Faye LL et al. | β | 2013 | β |
| Resequencing three candidate genes for major depressive disorder in a Dutch cohort. | Verbeek EC et al. | β | 2013 | β |
| Selection of SNP from 50K and 777K arrays to predict breed of origin in cattle. | Hulsegge B et al. | β | 2013 | β |
| Sex- and subtype-specific analysis of H2AFX polymorphisms in non-Hodgkin lymphoma. | Bretherick KL et al. | β | 2013 | β |
| The association between genetic risk factors and the size of intracranial aneurysms at time of rupture. | Kleinloog R et al. | β | 2013 | β |
| The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future. | Gottesman O et al. | β | 2013 | β |
| Use of partial least squares regression to impute SNP genotypes in Italian cattle breeds. | Dimauro C et al. | β | 2013 | β |
| Using chromatin marks to interpret and localize genetic associations to complex human traits and diseases. | Trynka G et al. | β | 2013 | β |