Assessing the probability that a positive report is false: an approach for molecular epidemiology studies.
- Authors
- Wacholder, Sholom; Chanock, Stephen; Garcia-Closas, Montserrat; El Ghormli, Laure; Rothman, Nathaniel
- Year
- 2004
- Journal
- Journal of the National Cancer Institute
- PMID
- 15026468
- DOI
- 10.1093/jnci/djh075
- PMCID
- PMC7713993
Too many reports of associations between genetic variants and common cancer sites and other complex diseases are false positives. A major reason for this unfortunate situation is the strategy of declaring statistical significance based on a P value alone, particularly, any P value below.05. The false positive report probability (FPRP), the probability of no true association between a genetic variant and disease given a statistically significant finding, depends not only on the observed P value but also on both the prior probability that the association between the genetic variant and the disease is real and the statistical power of the test. In this commentary, we show how to assess the FPRP and how to use it to decide whether a finding is deserving of attention or "noteworthy." We show how this approach can lead to improvements in the design, analysis, and interpretation of molecular epidemiology studies. Our proposal can help investigators, editors, and readers of research articles to protect themselves from overinterpreting statistically significant findings that are not likely to signify a true association. An FPRP-based criterion for deciding whether to call a finding noteworthy formalizes the process already used informally by investigators--that is, tempering enthusiasm for remarkable study findings with considerations of plausibility.
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| A functional +61G/A polymorphism in epidermal growth factor is associated with glioma risk among Asians. | Xu X et al. | β | 2012 | β |
| A functional NQO1 609C>T polymorphism and risk of gastrointestinal cancers: a meta-analysis. | Yu H et al. | β | 2012 | β |
| A genetic variant in the promoter region of Toll-like receptor 9 and cervical cancer susceptibility. | Chen X et al. | β | 2012 | β |
| A meta-analysis of Ξ²1-adrenergic receptor gene polymorphisms in idiopathic dilated cardiomyopathy. | Jin B et al. | β | 2012 | β |
| A polymorphism in metallothionein 1A (MT1A) is associated with cadmium-related excretion of urinary beta 2-microglobulin. | Lei L et al. | β | 2012 | β |
| Associated risk of XRCC1 and XPD cross talk and life style factors in progression of head and neck cancer in north Indian population. | Kumar A et al. | β | 2012 | β |
| Association between CASP8 and CASP10 polymorphisms and toxicity outcomes with platinum-based chemotherapy in Chinese patients with non-small cell lung cancer. | Qian J et al. | β | 2012 | β |
| Association between EGF +61 genetic polymorphisms and non-small cell lung cancer increased risk in a Portuguese population: a case-control study. | de Mello RA et al. | β | 2012 | β |
| Association between total number of deaths, diabetes mellitus, incident cancers, and haplotypes in chromosomal region 8q24 in a prospective study. | Guarrera S et al. | β | 2012 | β |
| Association between XPF polymorphisms and cancer risk: a meta-analysis. | Shi TY et al. | β | 2012 | β |
| Association of an Osteopontin gene promoter polymorphism with susceptibility to diabetic nephropathy in Asian Indians. | Cheema BS et al. | β | 2012 | β |
| Association of BRCA1 functional single nucleotide polymorphisms with risk of differentiated thyroid carcinoma. | Xu L et al. | β | 2012 | β |
| Association of NOS2 and potential effect of VEGF, IL6, CCL2 and IL1RN polymorphisms and haplotypes on susceptibility to GCA--a simultaneous study of 130 potentially functional SNPs in 14 candidate genes. | Enjuanes A et al. | β | 2012 | β |
| Association of the miR-146aC>G, 149C>T, 196a2C>T, and 499A>G polymorphisms with colorectal cancer in the Korean population. | Min KT et al. | β | 2012 | β |
| Breast cancer risk and 6q22.33: combined results from Breast Cancer Association Consortium and Consortium of Investigators on Modifiers of BRCA1/2. | Kirchhoff T et al. | β | 2012 | β |
| CDH1 promoter polymorphism and stomach cancer susceptibility. | Li YL et al. | β | 2012 | β |
| Chapter 11: challenges in and principles for conducting systematic reviews of genetic tests used as predictive indicators. | Jonas DE et al. | β | 2012 | β |
| Clinical relevance of RET variants G691S, L769L, S836S and S904S to sporadic medullary thyroid cancer. | Machens A et al. | β | 2012 | β |
| Commentary: Genome-wide significance thresholds via Bayes factors. | Wakefield J | β | 2012 | β |
| Correlation of cytidine deaminase polymorphisms and activity with clinical outcome in gemcitabine-/platinum-treated advanced non-small-cell lung cancer patients. | Tibaldi C et al. | β | 2012 | β |
| Do discordant cancers share familial susceptibility? | Hemminki K et al. | β | 2012 | β |
| Endothelial nitric oxide synthase gene polymorphism and type 2 diabetic retinopathy among Asian Indians. | Cheema BS et al. | β | 2012 | β |
| Epigenetic modifications associated with suicide and common mood and anxiety disorders: a systematic review of the literature. | El-Sayed AM et al. | β | 2012 | β |
| Estrogen receptor alpha gene polymorphisms and risk of HBV-related acute liver failure in the Chinese population. | Yan Z et al. | β | 2012 | β |
| Functional genetic variants of c-Jun and their interaction with smoking and drinking increase the susceptibility to lung cancer in southern and eastern Chinese. | Huang B et al. | β | 2012 | β |
| Functional genetic variations in the IL-23 receptor gene are associated with risk of breast, lung and nasopharyngeal cancer in Chinese populations. | Zheng J et al. | β | 2012 | β |
| Functional polymorphisms in the insulin-like binding protein-3 gene may modulate susceptibility to differentiated thyroid carcinoma in Caucasian Americans. | Xu L et al. | β | 2012 | β |
| Functional single-nucleotide polymorphisms in the BRCA1 gene and risk of salivary gland carcinoma. | Xu L et al. | β | 2012 | β |
| Functional variations in the ATM gene and susceptibility to differentiated thyroid carcinoma. | Xu L et al. | β | 2012 | β |
| Gene Γ environment interaction models in psychiatric genetics. | Karg K et al. | β | 2012 | β |
| Genetic association between obstructive bronchitis and enzymes of oxidative stress. | Bauer M et al. | β | 2012 | β |
| Genetics of peripheral artery disease. | Leeper NJ et al. | β | 2012 | β |
| Genetic variants in TEX15 gene conferred susceptibility to spermatogenic failure in the Chinese Han population. | Ruan J et al. | β | 2012 | β |
| Genetic variation in alcohol dehydrogenase (ADH1A, ADH1B, ADH1C, ADH7) and aldehyde dehydrogenase (ALDH2), alcohol consumption and gastric cancer risk in the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort. | Duell EJ et al. | β | 2012 | β |
| Genetic variation in MDM2 and p14ARF and susceptibility to salivary gland carcinoma. | Jin L et al. | β | 2012 | β |
| Genetic variation in the 15q25 nicotinic acetylcholine receptor gene cluster (CHRNA5-CHRNA3-CHRNB4) interacts with maternal self-reported smoking status during pregnancy to influence birth weight. | Tyrrell J et al. | β | 2012 | β |
| Global tests of P-values for multifactor dimensionality reduction models in selection of optimal number of target genes. | Dai H et al. | β | 2012 | β |
| Glutathione S-transferase T1 polymorphism contributes to bladder cancer risk: a meta-analysis involving 50 studies. | Gong M et al. | β | 2012 | β |
| High order interactions of xenobiotic metabolizing genes and P53 codon 72 polymorphisms in acute leukemia. | Chauhan PS et al. | β | 2012 | β |
| hTERT cancer risk genotypes are associated with telomere length. | Melin BS et al. | β | 2012 | β |
| Impact of the Reelin signaling cascade (ligands-receptors-adaptor complex) on cognition in schizophrenia. | Verbrugghe P et al. | β | 2012 | β |
| Insight in glioma susceptibility through an analysis of 6p22.3, 12p13.33-12.1, 17q22-23.2 and 18q23 SNP genotypes in familial and non-familial glioma. | Liu Y et al. | β | 2012 | β |
| Integrated analysis reveals critical genomic regions in prostate tumor microenvironment associated with clinicopathologic phenotypes. | Ashida S et al. | β | 2012 | β |
| Interleukin-4 rs2243250 polymorphism is associated with asthma among Caucasians and related to atopic asthma. | Liu S et al. | β | 2012 | β |
| Invited commentary: more surprises from a gene desert. | Wacholder S et al. | β | 2012 | β |
| Joint effects of smoking and gene variants involved in sex steroid metabolism on hot flashes in late reproductive-age women. | Butts SF et al. | β | 2012 | β |
| miR-499 rs3746444 polymorphism is associated with cancer development among Asians and related to breast cancer susceptibility. | Chen P et al. | β | 2012 | β |
| Modeling haplotype-haplotype interactions in case-control genetic association studies. | Zhang L et al. | β | 2012 | β |
| MyelomA Genetics International Consortium. | Morgan G et al. | β | 2012 | β |
| Neuroimaging of the periaqueductal gray: state of the field. | Linnman C et al. | β | 2012 | β |
| Ovarian cancer risk associated with inherited inflammation-related variants. | White KL et al. | β | 2012 | β |
| Phosphodiesterase 8B gene polymorphism in women with recurrent miscarriage: a retrospective case control study. | Granfors M et al. | β | 2012 | β |
| Polymorphisms in ERCC1 and XPF genes and risk of gastric cancer in an eastern Chinese population. | He J et al. | β | 2012 | β |
| Potentially functional polymorphisms in DNA repair genes and non-small-cell lung cancer survival: a pathway-based analysis. | Dong J et al. | β | 2012 | β |
| Role of common genetic variants in ovarian cancer susceptibility and outcome: progress to date from the Ovarian Cancer Association Consortium (OCAC). | Bolton KL et al. | β | 2012 | β |
| Role of p53 and p73 genes polymorphisms in susceptibility to esophageal cancer: a case control study in a northern Indian population. | Umar M et al. | β | 2012 | β |
| Role of tumor necrosis factor-alpha (C-863A) polymorphism in pathogenesis of inflammatory bowel disease in Northern India. | Ahirwar DK et al. | β | 2012 | β |
| Single nucleotide polymorphisms and risk of hepatocellular carcinoma in cirrhosis. | Nahon P et al. | β | 2012 | β |
| Single nucleotide polymorphisms of matrix metallopeptidase 3 and risk of gliomas in a Chinese Han population. | Fan W et al. | β | 2012 | β |
| Susceptibility variants for obesity and colorectal cancer risk: the multiethnic cohort and PAGE studies. | Lim U et al. | β | 2012 | β |
| TERT-CLPTM1L polymorphism rs401681 contributes to cancers risk: evidence from a meta-analysis based on 29 publications. | Yin J et al. | β | 2012 | β |
| The association between Toll-like receptor 2 single-nucleotide polymorphisms and hepatocellular carcinoma susceptibility. | Junjie X et al. | β | 2012 | β |
| The genetic epidemiology of idiopathic scoliosis. | Gorman KF et al. | β | 2012 | β |
| The NQO1 rs1800566 polymorphism and risk of bladder cancer: evidence from 6,169 subjects. | Guo ZJ et al. | β | 2012 | β |
| The protective role of polymorphism MKK4-1304 T>G in nasopharyngeal carcinoma is modulated by Epstein-Barr virus' infection status. | Zheng J et al. | β | 2012 | β |
| The role of microRNA-binding site polymorphisms in DNA repair genes as risk factors for bladder cancer and breast cancer and their impact on radiotherapy outcomes. | Teo MT et al. | β | 2012 | β |
| Travelling the world of gene-gene interactions. | Steen KV | β | 2012 | β |
| Ultrahigh-dimensional variable selection method for whole-genome gene-gene interaction analysis. | Ueki M et al. | β | 2012 | β |
| Update on the genetics of migraine. | Merikangas KR | β | 2012 | β |
| What can genetics tell us about the cause of fixed airflow obstruction? | Wain LV et al. | β | 2012 | β |
| X-ray repair cross-complementing group 1 (XRCC1) genetic polymorphisms and cervical cancer risk: a huge systematic review and meta-analysis. | Li Y et al. | β | 2012 | β |
| Y chromosome haplogroups and prostate cancer in populations of European and Ashkenazi Jewish ancestry. | Wang Z et al. | β | 2012 | β |
| A bayesian method for evaluating and discovering disease loci associations. | Jiang X et al. | β | 2011 | β |
| A cis-acting regulatory variation of the estrogen receptor Ξ± (ESR1) gene is associated with hepatitis B virus-related liver cirrhosis. | Yan Z et al. | β | 2011 | β |
| A combination of functional polymorphisms in the CASP8, MMP1, IL10 and SEPS1 genes affects risk of non-small cell lung cancer. | Hart K et al. | β | 2011 | β |
| A critical review of the first 10 years of candidate gene-by-environment interaction research in psychiatry. | Duncan LE et al. | β | 2011 | β |
| A functional tandem-repeats polymorphism in the downstream of TERT is associated with the risk of nasopharyngeal carcinoma in Chinese population. | Zhang Y et al. | β | 2011 | β |
| A functional variant at the miR-184 binding site in TNFAIP2 and risk of squamous cell carcinoma of the head and neck. | Liu Z et al. | β | 2011 | β |
| A genetic variant in the APE1/Ref-1 gene promoter -141T/G may modulate risk of glioblastoma in a Chinese Han population. | Zhou K et al. | β | 2011 | β |
| Analysis of genome-wide association study data using the protein knowledge base. | Ballouz S et al. | β | 2011 | β |
| A non-synonymous polymorphism Thr115Met in the EpCAM gene is associated with an increased risk of breast cancer in Chinese population. | Jiang L et al. | β | 2011 | β |
| A polymorphism in the chromosome 9p21 ANRIL locus is associated to Philadelphia positive acute lymphoblastic leukemia. | Iacobucci I et al. | β | 2011 | β |
| Application of the optimal discovery procedure to genetic case-control studies: comparison with p values and asymptotic Bayes factors. | Tachmazidou I et al. | β | 2011 | β |
| A replication study of the IRS1, CAPN10, TCF7L2, and PPARG gene polymorphisms associated with type 2 diabetes in two different populations of Mexico. | MartΓnez-GΓ³mez LE et al. | β | 2011 | β |
| Association analysis of the LTA4H gene polymorphisms and pulmonary tuberculosis in 9115 subjects. | Curtis J et al. | β | 2011 | β |
| Association between ADRA1A gene and the metabolic syndrome: candidate genes and functional counterpart in the PAMELA population. | Grassi G et al. | β | 2011 | β |
| Association between DNA-repair polymorphisms and survival in pancreatic cancer patients treated with combination chemotherapy. | Giovannetti E et al. | β | 2011 | β |
| Association between genes encoding components of the IL-10/IL-0 receptor pathway and asthma in children. | Hussein YM et al. | β | 2011 | β |
| Association between KRAS rs61764370 and triple-negative breast cancer--a false positive? | Pharoah P et al. | β | 2011 | β |
| Association between somatostatin receptor 5 gene polymorphisms and pancreatic cancer risk and survival. | Li D et al. | β | 2011 | β |
| Association of multi-drug resistance gene polymorphisms with pancreatic cancer outcome. | Tanaka M et al. | β | 2011 | β |
| Association of primary ovarian insufficiency with a specific human leukocyte antigen haplotype (A*24:02-C*03:03-B*35:01) in Japanese women. | Ayabe T et al. | β | 2011 | β |
| Association of Rad51 polymorphism with DNA repair in BRCA1 mutation carriers and sporadic breast cancer risk. | Ricks-Santi LJ et al. | β | 2011 | β |
| Breast cancer genomics based on biobanks. | FΓΆrsti A et al. | β | 2011 | β |
| Candidate gene studies in gallbladder cancer: a systematic review and meta-analysis. | Srivastava K et al. | β | 2011 | β |
| CDH1 -160C>A gene polymorphism is an ethnicity-dependent risk factor for gastric cancer. | Chen B et al. | β | 2011 | β |
| Childhood brain tumors and maternal cured meat consumption in pregnancy: differential effect by glutathione S-transferases. | Searles Nielsen S et al. | β | 2011 | β |
| Consumption of animal products, olive oil and dietary fat and results from the Belgian case-control study on bladder cancer risk. | Brinkman MT et al. | β | 2011 | β |
| Cyclin D1 G870A polymorphism and colorectal cancer susceptibility: a meta-analysis of 20 populations. | Zhang LQ et al. | β | 2011 | β |
| Dietary intake of micronutrients and the risk of developing bladder cancer: results from the Belgian case-control study on bladder cancer risk. | Brinkman MT et al. | β | 2011 | β |
| Effects of MDM2 promoter polymorphisms and p53 codon 72 polymorphism on risk and age at onset of squamous cell carcinoma of the head and neck. | Yu H et al. | β | 2011 | β |
| Estrogen receptor beta rs1271572 polymorphism and invasive ovarian carcinoma risk: pooled analysis within the Ovarian Cancer Association Consortium. | Lurie G et al. | β | 2011 | β |
| Evaluating de novo locus-disease discoveries in GWAS using the signal-to-noise ratio. | Jiang X et al. | β | 2011 | β |
| Evaluation of functional genetic variants for breast cancer risk: results from the Shanghai breast cancer study. | Zhang B et al. | β | 2011 | β |
| Evaluation of the association studies of single nucleotide polymorphisms and hepatocellular carcinoma: a systematic review. | Jin F et al. | β | 2011 | β |
| Functional variants of -1318T > G and -673C > T in c-Jun promoter region associated with increased colorectal cancer risk by elevating promoter activity. | Chen D et al. | β | 2011 | β |
| Gallbladder cancer predisposition: a multigenic approach to DNA-repair, apoptotic and inflammatory pathway genes. | Srivastava K et al. | β | 2011 | β |
| GDF5 single-nucleotide polymorphism rs143383 is associated with lumbar disc degeneration in Northern European women. | Williams FM et al. | β | 2011 | β |
| Genetic associations in diabetic nephropathy: a meta-analysis. | Mooyaart AL et al. | β | 2011 | β |
| Genetic polymorphisms and breast cancer risk: evidence from meta-analyses, pooled analyses, and genome-wide association studies. | Peng S et al. | β | 2011 | β |
| Genetic polymorphisms in the precursor MicroRNA flanking region and non-small cell lung cancer survival. | Hu Z et al. | β | 2011 | β |
| Genetic variants and the risk for invasive mould disease in immunocompromised hematology patients. | van der Velden WJ et al. | β | 2011 | β |
| Genetic variation in DNA repair pathway genes and melanoma risk. | Zhang M et al. | β | 2011 | β |
| Genome-wide association studies of atrial fibrillation: past, present, and future. | Sinner MF et al. | β | 2011 | β |
| Glutathione S-transferase T1 polymorphism is associated with breast cancer susceptibility. | Chen XX et al. | β | 2011 | β |
| GSTM1 null allele is a risk factor for gastric cancer development in Asians. | Qiu LX et al. | β | 2011 | β |
| HLA-DR4 antigen and idiopathic dilated cardiomyopathy susceptibility: a meta-analysis involving 11,761 subjects. | Jin B et al. | β | 2011 | β |
| Human genetic variants of homologous recombination repair genes first found to be associated with Epstein-Barr virus antibody titers in healthy Cantonese. | Shen GP et al. | β | 2011 | β |
| Impact of EGFR genetic variants on glioma risk and patient outcome. | Costa BM et al. | β | 2011 | β |
| Lack of association between XPG Asp1104His and XPF Arg415Gln polymorphism and breast cancer risk: a meta-analysis of case-control studies. | Ding DP et al. | β | 2011 | β |
| Large-scale exploration of gene-gene interactions in prostate cancer using a multistage genome-wide association study. | Ciampa J et al. | β | 2011 | β |
| Low penetrance breast cancer susceptibility loci are associated with specific breast tumor subtypes: findings from the Breast Cancer Association Consortium. | Broeks A et al. | β | 2011 | β |
| MDM2 SNP309 contributes to non-small cell lung cancer survival in Chinese. | Dong J et al. | β | 2011 | β |
| miR-196a2 C allele is a low-penetrant risk factor for cancer development. | Qiu LX et al. | β | 2011 | β |
| Multiple analytical approaches reveal distinct gene-environment interactions in smokers and non smokers in lung cancer. | Ihsan R et al. | β | 2011 | β |
| No association between the T280M polymorphism of the CX3CR1 gene and exudative AMD. | Zerbib J et al. | β | 2011 | β |
| Novel rank-based approaches for discovery and replication in genome-wide association studies. | Kuo CL et al. | β | 2011 | β |
| On standards of evidence. | Wacholder S | β | 2011 | β |
| On universal common ancestry, sequence similarity, and phylogenetic structure: the sins of P-values and the virtues of Bayesian evidence. | Theobald DL | β | 2011 | β |
| Organic anion transporter 1B1 (SLCO1B1) polymorphism and gallstone formation: High incidence of Exon4 CA genotype in female patients in North India. | Srivastava A et al. | β | 2011 | β |
| P21 codon 31 polymorphism associated with cancer among white people: evidence from a meta-analysis involving 78,074 subjects. | Liu F et al. | β | 2011 | β |
| Polycyclic aromatic hydrocarbons-aromatic DNA adducts in cord blood and behavior scores in New York city children. | Perera FP et al. | β | 2011 | β |
| Polymorphisms in genes involved in innate immunity and susceptibility to benzene-induced hematotoxicity. | Shen M et al. | β | 2011 | β |
| Polymorphisms in nucleotide excision repair genes and endometrial cancer risk. | Doherty JA et al. | β | 2011 | β |
| Polymorphisms in the 5' flank of COL1A1 gene and osteoporosis: meta-analysis of published studies. | Jin H et al. | β | 2011 | β |
| Polymorphisms of MDM4 and risk of squamous cell carcinoma of the head and neck. | Yu H et al. | β | 2011 | β |
| Predicting the future of genetic risk prediction. | Chatterjee N et al. | β | 2011 | β |
| Quantifying selective reporting and the Proteus phenomenon for multiple datasets with similar bias. | Pfeiffer T et al. | β | 2011 | β |
| Rationale for an international consortium to study inherited genetic susceptibility to childhood acute lymphoblastic leukemia. | Sherborne AL et al. | β | 2011 | β |
| Recommendations for publication of genetic association studies in Arthritis & Rheumatism. | Plenge RM et al. | β | 2011 | β |
| Reconsidering the "Good Divorce" | Amato PR et al. | β | 2011 | β |
| Response to Weidhaas and Slack re: Comments on "The role of <i>KRAS</i> rs61764370 in invasive epithelial ovarian cancer: implication for clinical testing" | Risch HA et al. | β | 2011 | β |
| Risk of acute promyelocytic leukemia in multiple sclerosis: coding variants of DNA repair genes. | Hasan SK et al. | β | 2011 | β |
| Role of OGG1 Ser326Cys polymorphism and 8-oxoguanine DNA damage in risk assessment of squamous cell carcinoma of head and neck in North Indian population. | Kumar A et al. | β | 2011 | β |
| Role of survivin gene promoter polymorphism (-31G>C) in susceptibility and survival of esophageal cancer in northern India. | Upadhyay R et al. | β | 2011 | β |
| Sequence Variants and the Risk of Head and Neck Cancer: Pooled Analysis in the INHANCE Consortium. | Chuang SC et al. | β | 2011 | β |
| Single nucleotide polymorphism (SNP) analysis demonstrates a significant association of tumour necrosis factor-alpha (TNFA) with primary immune thrombocytopenia among Caucasian adults. | Sarpatwari A et al. | β | 2011 | β |
| Single nucleotide polymorphisms of Toll-like receptor 4 decrease the risk of development of hepatocellular carcinoma. | Minmin S et al. | β | 2011 | β |
| The Air Force health study: an epidemiologic retrospective. | Buffler PA et al. | β | 2011 | β |
| The false-positive to false-negative ratio in epidemiologic studies. | Ioannidis JP et al. | β | 2011 | β |
| The genetics of pre-eclampsia and other hypertensive disorders of pregnancy. | Williams PJ et al. | β | 2011 | β |
| The influence of one-carbon metabolism on gene promoter methylation in a population-based breast cancer study. | Xu X et al. | β | 2011 | β |
| The polymorphism and haplotypes of PIN1 gene are associated with the risk of lung cancer in Southern and Eastern Chinese populations. | Lu J et al. | β | 2011 | β |
| The role of KRAS rs61764370 in invasive epithelial ovarian cancer: implications for clinical testing. | Pharoah PD et al. | β | 2011 | β |
| TP53 Arg72Pro polymorphism is associated with esophageal cancer risk: a meta-analysis. | Jiang DK et al. | β | 2011 | β |
| UCP2 -866G/A and Ala55Val, and UCP3 -55C/T polymorphisms in association with type 2 diabetes susceptibility: a meta-analysis study. | Xu K et al. | β | 2011 | β |
| Variation in innate immunity genes and risk of multiple myeloma. | Purdue MP et al. | β | 2011 | β |
| Varied association of prothrombin G20210A polymorphism with coronary artery disease susceptibility in different ethnic groups: evidence from 15,041 cases and 21,507 controls. | Jin B et al. | β | 2011 | β |
| XRCC1 and ERCC1 variants modify malignant mesothelioma risk: a case-control study. | Betti M et al. | β | 2011 | β |
| 677TT genotype is associated with elevated risk of methotrexate (MTX) toxicity in juvenile idiopathic arthritis: treatment outcome, erythrocyte concentrations of MTX and folates, and MTHFR polymorphisms. | TukovΓ‘ J et al. | β | 2010 | β |
| A comprehensive analysis of common IGF1, IGFBP1 and IGFBP3 genetic variation with prospective IGF-I and IGFBP-3 blood levels and prostate cancer risk among Caucasians. | Schumacher FR et al. | β | 2010 | β |
| A comprehensive study of the association between the EGFR and ERBB2 genes and glioma risk. | Andersson U et al. | β | 2010 | β |
| Alcohol, tobacco and genetic susceptibility in relation to cancers of the upper aerodigestive tract in northern Italy. | Canova C et al. | β | 2010 | β |
| Angiotensin I-converting enzyme insertion/deletion polymorphism and increased risk of gall bladder cancer in women. | Srivastava K et al. | β | 2010 | β |
| A polymorphism in the GALNT2 gene and ovarian cancer risk in four population based case-control studies. | Terry KL et al. | β | 2010 | β |
| Application of OMICS technologies in occupational and environmental health research; current status and projections. | Vlaanderen J et al. | β | 2010 | β |
| A pure likelihood approach to the analysis of genetic association data: an alternative to Bayesian and frequentist analysis. | Strug LJ et al. | β | 2010 | β |
| A simple Bayesian mixture model with a hybrid procedure for genome-wide association studies. | Wei YC et al. | β | 2010 | β |
| A single nucleotide polymorphism in the alcohol dehydrogenase 7 gene (alanine to glycine substitution at amino acid 92) is associated with the risk of squamous cell carcinoma of the head and neck. | Wei S et al. | β | 2010 | β |
| Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples. | Hong H et al. | β | 2010 | β |
| Association between C282Y and H63D mutations of the HFE gene with hepatocellular carcinoma in European populations: a meta-analysis. | Jin F et al. | β | 2010 | β |
| Association between common mtDNA variants and all-cause or colorectal cancer mortality. | Theodoratou E et al. | β | 2010 | β |
| Association between lymphotoxin-alpha (tumor necrosis factor-beta) intron polymorphism and predisposition to severe sepsis is modified by gender and age. | Watanabe E et al. | β | 2010 | β |
| Association between major depressive disorder and a functional polymorphism of the 5-hydroxytryptamine (serotonin) transporter gene: a meta-analysis. | Kiyohara C et al. | β | 2010 | β |
| Association of a single nucleotide polymorphism in Tbx4 with developmental dysplasia of the hip: a case-control study. | Wang K et al. | β | 2010 | β |
| Association of Gly972Arg polymorphism of IRS1 gene with type 2 diabetes mellitus in lean participants of a national health survey in Mexico: a candidate gene study. | Burguete-Garcia AI et al. | β | 2010 | β |
| Association of JAG1 with bone mineral density and osteoporotic fractures: a genome-wide association study and follow-up replication studies. | Kung AW et al. | β | 2010 | β |
| Association of the CTLA4 gene with Graves' disease in the Chinese Han population. | Zhao SX et al. | β | 2010 | β |
| Bayes factors in complex genetics. | Sawcer S | β | 2010 | β |
| BAYESIAN MODEL SEARCH AND MULTILEVEL INFERENCE FOR SNP ASSOCIATION STUDIES. | Wilson MA et al. | β | 2010 | β |
| Candidate gene association studies and risk of childhood acute lymphoblastic leukemia: a systematic review and meta-analysis. | Vijayakrishnan J et al. | β | 2010 | β |
| Candidate gene association studies: successes and failures. | Pasche B et al. | β | 2010 | β |
| Candidate gene association study conditioning on individual ancestry in patients with type 2 diabetes and metabolic syndrome from Mexico City. | Cruz M et al. | β | 2010 | β |
| Caspase-8 polymorphisms and risk of gallbladder cancer in a northern Indian population. | Srivastava K et al. | β | 2010 | β |
| CCL3L1 copy number variation and susceptibility to HIV-1 infection: a meta-analysis. | Liu S et al. | β | 2010 | β |
| Characterization of the effectiveness of reporting lists of small feature sets relative to the accuracy of the prior biological knowledge. | Zhao C et al. | β | 2010 | β |
| Childhood brain tumors, residential insecticide exposure, and pesticide metabolism genes. | Searles Nielsen S et al. | β | 2010 | β |
| CISH and susceptibility to infectious diseases. | Khor CC et al. | β | 2010 | β |
| Clinical associations of the genetic variants of CTLA-4, Tg, TSHR, PTPN22, PTPN12 and FCRL3 in patients with Graves' disease. | Gu LQ et al. | β | 2010 | β |
| COGENT (COlorectal cancer GENeTics): an international consortium to study the role of polymorphic variation on the risk of colorectal cancer. | Tomlinson IP et al. | β | 2010 | β |
| Common genetic variants in pre-microRNAs and risk of gallbladder cancer in North Indian population. | Srivastava K et al. | β | 2010 | β |
| Common genetic variation of insulin-like growth factor-binding protein 1 (IGFBP-1), IGFBP-3, and acid labile subunit in relation to serum IGF-I levels and mammographic density. | Taverne CW et al. | β | 2010 | β |
| Comprehensive analysis of common genetic variation in 61 genes related to steroid hormone and insulin-like growth factor-I metabolism and breast cancer risk in the NCI breast and prostate cancer cohort consortium. | Canzian F et al. | β | 2010 | β |
| CYP2D6 gene variants: association with breast cancer specific survival in a cohort of breast cancer patients from the United Kingdom treated with adjuvant tamoxifen. | Abraham JE et al. | β | 2010 | β |
| CYP7A1 (-204 A>C; rs3808607 and -469 T>C; rs3824260) promoter polymorphisms and risk of gallbladder cancer in North Indian population. | Srivastava A et al. | β | 2010 | β |
| DNMT3B -579 G>T promoter polymorphism and risk of gallbladder carcinoma in North Indian population. | Srivastava K et al. | β | 2010 | β |
| Don't split your data. | KΓ€llberg H et al. | β | 2010 | β |
| Do pressures to publish increase scientists' bias? An empirical support from US States Data. | Fanelli D | β | 2010 | β |
| Dose-finding study and pharmacogenomic analysis of fixed-rate infusion of gemcitabine, irinotecan and bevacizumab in pretreated metastatic colorectal cancer patients. | Abajo A et al. | β | 2010 | β |
| Effectiveness of strategies to increase the validity of findings from association studies: size vs. replication. | Weitkunat R et al. | β | 2010 | β |
| Evaluation of candidate stromal epithelial cross-talk genes identifies association between risk of serous ovarian cancer and TERT, a cancer susceptibility "hot-spot". | Johnatty SE et al. | β | 2010 | β |
| Examination of genetic polymorphisms in newborns for signatures of sex-specific prenatal selection. | Ucisik-Akkaya E et al. | β | 2010 | β |
| Functional polymorphisms in cell death pathway genes and risk of renal cell carcinoma. | Zhu J et al. | β | 2010 | β |
| Gamma-radiation sensitivity and polymorphisms in RAD51L1 modulate glioma risk. | Liu Y et al. | β | 2010 | β |
| Gemcitabine metabolic and transporter gene polymorphisms are associated with drug toxicity and efficacy in patients with locally advanced pancreatic cancer. | Tanaka M et al. | β | 2010 | β |
| Gender-specific association of methylenetetrahydrofolate reductase genotype and haplotype with the aggressiveness and prognosis of clear cell renal cell carcinoma in Japanese patients. | Sakano S et al. | β | 2010 | β |
| Gene polymorphisms in cyclophosphamide metabolism pathway,treatment-related toxicity, and disease-free survival in SWOG 8897 clinical trial for breast cancer. | Yao S et al. | β | 2010 | β |
| Genetic polymorphisms in the endothelial nitric oxide synthase gene correlate with overall survival in advanced non-small-cell lung cancer patients treated with platinum-based doublet chemotherapy. | Fujita S et al. | β | 2010 | β |
| Genetic variants in GSTM3 gene within GSTM4-GSTM2-GSTM1-GSTM5-GSTM3 cluster influence breast cancer susceptibility depending on GSTM1. | Yu KD et al. | β | 2010 | β |
| Genetic variants in one-carbon metabolism-related genes contribute to NSCLC prognosis in a Chinese population. | Jin G et al. | β | 2010 | β |
| Genetic variants in Piwi-interacting RNA pathway genes confer susceptibility to spermatogenic failure in a Chinese population. | Gu A et al. | β | 2010 | β |
| Genetic variation in chromosomal translocation breakpoint and immune function genes and risk of non-Hodgkin lymphoma. | Fernberg P et al. | β | 2010 | β |
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| Genetic variation within the HLA class III influences T1D susceptibility conferred by high-risk HLA haplotypes. | Valdes AM et al. | β | 2010 | β |
| Genome-wide association studies and beyond. | Witte JS | β | 2010 | β |
| Genome-wide association study of intracranial aneurysm identifies three new risk loci. | Yasuno K et al. | β | 2010 | β |
| Genome-wide association study to identify genetic variants present in Japanese patients harboring intracranial aneurysms. | Akiyama K et al. | β | 2010 | β |
| Gerontologic biostatistics: the statistical challenges of clinical research with older study participants. | Van Ness PH et al. | β | 2010 | β |
| Glutathione S-transferase M1 polymorphism and breast cancer susceptibility: a meta-analysis involving 46,281 subjects. | Qiu LX et al. | β | 2010 | β |
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| Introduction to epigenomics and epigenome-wide analysis. | Fazzari MJ et al. | β | 2010 | β |
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| Minerals and vitamins and the risk of bladder cancer: results from the New Hampshire Study. | Brinkman MT et al. | β | 2010 | β |
| MnSOD Val16Ala polymorphism and prostate cancer susceptibility: a meta-analysis involving 8,962 subjects. | Mao C et al. | β | 2010 | β |
| MTHFR polymorphisms in relation to ovarian cancer risk. | Terry KL et al. | β | 2010 | β |
| NOS1AP variant associated with incidence of type 2 diabetes in calcium channel blocker users in the Atherosclerosis Risk in Communities (ARIC) study. | Chu AY et al. | β | 2010 | β |
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| Polymorphisms in EGFR and VEGF contribute to non-small-cell lung cancer survival in a Chinese population. | Dong J et al. | β | 2010 | β |
| Polymorphisms in ERCC2, MSH2, and OGG1 DNA repair genes and gallbladder cancer risk in a population of Northern India. | Srivastava K et al. | β | 2010 | β |
| Polymorphisms in fatty-acid-metabolism-related genes are associated with colorectal cancer risk. | Hoeft B et al. | β | 2010 | β |
| Polymorphisms of LIG4, BTBD2, HMGA2, and RTEL1 genes involved in the double-strand break repair pathway predict glioblastoma survival. | Liu Y et al. | β | 2010 | β |
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| RGMA and IL21R show association with experimental inflammation and multiple sclerosis. | Nohra R et al. | β | 2010 | β |
| Role of ABCG8 D19H (rs11887534) variant in gallstone susceptibility in northern India. | Srivastava A et al. | β | 2010 | β |
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| Single nucleotide polymorphisms of 8 inflammation-related genes and their associations with smoking-related cancers. | Oh SS et al. | β | 2010 | β |
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| The p21 Ser31Arg polymorphism and breast cancer risk: a meta-analysis involving 51,236 subjects. | Qiu LX et al. | β | 2010 | β |
| Tumor necrosis factor-alpha-308A allele may have a protective effect for chronic hepatitis B virus infection in Mongoloid populations. | Zheng MH et al. | β | 2010 | β |
| Two common nonsynonymous paraoxonase 1 (PON1) gene polymorphisms and brain astrocytoma and meningioma. | MartΓnez C et al. | β | 2010 | β |
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| A case-control and a family-based association study revealing an association between CYP2E1 polymorphisms and nasopharyngeal carcinoma risk in Cantonese. | Jia WH et al. | β | 2009 | β |
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| Active and involuntary tobacco smoking and upper aerodigestive tract cancer risks in a multicenter case-control study. | Lee YC et al. | β | 2009 | β |
| A Fast Implementation of a Scan Statistic for Identifying Chromosomal Patterns of Genome Wide Association Studies. | Sun YV et al. | β | 2009 | β |
| A functional genetic variant in microRNA-196a2 is associated with increased susceptibility of lung cancer in Chinese. | Tian T et al. | β | 2009 | β |
| Alzheimer's disease genetics current status and future perspectives. | Bertram L | β | 2009 | β |
| Analysis of germline variants in CDH1, IGFBP3, MMP1, MMP3, STK15 and VEGF in familial and sporadic renal cell carcinoma. | Ricketts C et al. | β | 2009 | β |
| A new PTGDR promoter polymorphism in a population of children with asthma. | Sanz C et al. | β | 2009 | β |
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| Arsenic metabolism is influenced by polymorphisms in genes involved in one-carbon metabolism and reduction reactions. | SchlΓ€wicke EngstrΓΆm K et al. | β | 2009 | β |
| A specific interleukin-1B haplotype correlates with high levels of IL1B mRNA in the lung and increased risk of non-small cell lung cancer. | Landvik NE et al. | β | 2009 | β |
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| Association of TBX21 T-1993C polymorphism with viral persistence but not disease progression in hepatitis B virus carriers. | Chen S et al. | β | 2009 | β |
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| Common genetic variation in TP53 and risk of human papillomavirus persistence and progression to CIN3/cancer revisited. | Koshiol J et al. | β | 2009 | β |
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| Common variants of inflammatory cytokine genes are associated with risk of nephropathy in type 2 diabetes among Asian Indians. | Ahluwalia TS et al. | β | 2009 | β |
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| DHFR 19-bp insertion/deletion polymorphism and MTHFR C677T in adult acute lymphoblastic leukaemia: is the risk reduction due to intracellular folate unbalancing? | Gemmati D et al. | β | 2009 | β |
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| Do common genetic variants in endotoxin signaling pathway contribute to predisposition to alcoholic liver cirrhosis? | PetrΓ‘sek J et al. | β | 2009 | β |
| Double-strand break DNA repair genotype predictive of later mortality and cancer incidence in a cohort of non-smokers. | Neasham D et al. | β | 2009 | β |
| Empirical Bayes and semi-Bayes adjustments for a vast number of estimations. | StrΓΆmberg U | β | 2009 | β |
| Functional SNPs in the SCGB3A2 promoter are associated with susceptibility to Graves' disease. | Song HD et al. | β | 2009 | β |
| Gene-gene interactions in folate and adenosine biosynthesis pathways affect methotrexate efficacy and tolerability in rheumatoid arthritis. | Dervieux T et al. | β | 2009 | β |
| Genetic and nongenetic covariates of pain severity in patients with adenocarcinoma of the pancreas: assessing the influence of cytokine genes. | Reyes-Gibby CC et al. | β | 2009 | β |
| Genetic associations of 115 polymorphisms with cancers of the upper aerodigestive tract across 10 European countries: the ARCAGE project. | Canova C et al. | β | 2009 | β |
| Genetic background of lead and mercury metabolism in a group of medical students in Austria. | Gundacker C et al. | β | 2009 | β |
| Genetic polymorphisms in the catechol estrogen metabolism pathway and breast cancer risk. | Reding KW et al. | β | 2009 | β |
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| Genetic variants in association studies--review of strengths and weaknesses in study design and current knowledge of impact on cancer risk. | Andersson U et al. | β | 2009 | β |
| Genetic variants in the death receptor 4 gene contribute to susceptibility to bladder cancer. | Wang M et al. | β | 2009 | β |
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| Genetic variation in immune regulation and DNA repair pathways and stomach cancer in China. | Hussain SK et al. | β | 2009 | β |
| Genetic variation in telomere maintenance genes, telomere length, and lung cancer susceptibility. | Hosgood HD et al. | β | 2009 | β |
| Genetic variation in the progesterone receptor and metabolism pathways and hormone therapy in relation to breast cancer risk. | Reding KW et al. | β | 2009 | β |
| Genome-wide association studies, field synopses, and the development of the knowledge base on genetic variation and human diseases. | Khoury MJ et al. | β | 2009 | β |
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| Human V-ATPase gene can protect or predispose the host to pulmonary tuberculosis. | Capparelli R et al. | β | 2009 | β |
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| Investigation of candidate polymorphisms and disease activity in rheumatoid arthritis patients on methotrexate. | Lee YC et al. | β | 2009 | β |
| Invited commentary: efficient testing of gene-environment interaction. | Chatterjee N et al. | β | 2009 | β |
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| MDM2 309 T/G polymorphism is associated with lung cancer risk among Asians. | Gui XH et al. | β | 2009 | β |
| Mendelian randomization: how it can--and cannot--help confirm causal relations between nutrition and cancer. | Schatzkin A et al. | β | 2009 | β |
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| Molecular epidemiology of DNA repair genes in bladder cancer. | Kiltie AE | β | 2009 | β |
| Molecular epidemiology of major depressive disorder. | Kiyohara C et al. | β | 2009 | β |
| Neurokinin 1 receptor gene polymorphism might be correlated with recurrence rates in endometriosis. | Renner SP et al. | β | 2009 | β |
| Paternal smoking, genetic polymorphisms in CYP1A1 and childhood leukemia risk. | Lee KM et al. | β | 2009 | β |
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| Polymorphisms in DNA repair genes, smoking, and bladder cancer risk: findings from the international consortium of bladder cancer. | Stern MC et al. | β | 2009 | β |
| Possible association of tumor necrosis factor receptor 2 gene polymorphism with severe hypertension using the extreme discordant phenotype design. | Eguchi T et al. | β | 2009 | β |
| Prognostic efficacy of cardiac biomarkers for mortality in dialysis patients. | Hickman PE et al. | β | 2009 | β |
| PTEN identified as important risk factor of chronic obstructive pulmonary disease. | Hosgood HD et al. | β | 2009 | β |
| Putative functional polymorphisms of MMP9 predict survival of NSCLC in a Chinese population. | Jin G et al. | β | 2009 | β |
| Ranking of genome-wide association scan signals by different measures. | StrΓΆmberg U et al. | β | 2009 | β |
| Regulatory polymorphisms in the IL-10 gene promoter and HBV-related acute liver failure in the Chinese population. | Yan Z et al. | β | 2009 | β |
| Replication in genome-wide association studies. | Kraft P et al. | β | 2009 | β |
| Reporting and evaluating genetic association studies. | Peters SP | β | 2009 | β |
| Role of genetic polymorphisms and ovarian cancer susceptibility. | Fasching PA et al. | β | 2009 | β |
| Role of inflammation gene polymorphisms on pain severity in lung cancer patients. | Reyes-Gibby CC et al. | β | 2009 | β |
| Role of the N-acetyltransferase 2 detoxification system in thyroid cancer susceptibility. | Guilhen AC et al. | β | 2009 | β |
| Role played by human mannose-binding lectin polymorphisms in pulmonary tuberculosis. | Capparelli R et al. | β | 2009 | β |
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| Searching genetic risk factors for schizophrenia and bipolar disorder: learn from the past and back to the future. | Alaerts M et al. | β | 2009 | β |
| Significant associations of mismatch repair gene polymorphisms with clinical outcome of pancreatic cancer. | Dong X et al. | β | 2009 | β |
| Survival in type 2 diabetic patients in dialysis and the number of risk alleles in polymorphisms of the renin-angiotensin system genes. | PadrΓ³-Miquel A et al. | β | 2009 | β |
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| The association between -1304T>G polymorphism in the promoter of MKK4 gene and the risk of sporadic colorectal cancer in southern Chinese population. | Wei Y et al. | β | 2009 | β |
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| The E-cadherin (CDH1)--160 C/A polymorphism and prostate cancer risk: a meta-analysis. | Qiu LX et al. | β | 2009 | β |
| The genetic aspects of multiple sclerosis. | Sawcer S | β | 2009 | β |
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| The null distributions of test statistics in genomewide association studies. | Chen X et al. | β | 2009 | β |
| Variation in the TLR4 gene influences the risk of organ failure and shock posttrauma: a cohort study. | Shalhub S et al. | β | 2009 | β |
| Ability of epistatic interactions of cytokine single-nucleotide polymorphisms to predict susceptibility to disease subsets in systemic sclerosis patients. | Beretta L et al. | β | 2008 | β |
| A compendium of familial relative risks of cancer among first degree relatives: a population-based study. | Zeegers MP et al. | β | 2008 | β |
| Analysis of 927T > C CYSLTR1 and -444A > C LTC4S polymorphisms in children with asthma. | Arriba-MΓ©ndez S et al. | β | 2008 | β |
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| Analysis of variants in DNA damage signalling genes in bladder cancer. | Choudhury A et al. | β | 2008 | β |
| A novel functional polymorphism C1797G in the MDM2 promoter is associated with risk of bladder cancer in a Chinese population. | Wang M et al. | β | 2008 | β |
| A polymorphism in the human serotonin 5-HT2A receptor gene may protect against systemic sclerosis by reducing platelet aggregation. | Beretta L et al. | β | 2008 | β |
| A simple method for assessing the strength of evidence for association at the level of the whole gene. | Curtis D et al. | β | 2008 | β |
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| Associations between variants of the 8q24 chromosome and nine smoking-related cancer sites. | Park SL et al. | β | 2008 | β |
| Association study of prostate cancer susceptibility variants with risks of invasive ovarian, breast, and colorectal cancer. | Song H et al. | β | 2008 | β |
| Bone mineral density, osteoporosis, and osteoporotic fractures: a genome-wide association study. | Richards JB et al. | β | 2008 | β |
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| Effect of insulin-like growth factor gene polymorphisms alone or in interaction with diabetes on the risk of pancreatic cancer. | Suzuki H et al. | β | 2008 | β |
| Evaluating the role of LPIN1 variation in insulin resistance, body weight, and human lipodystrophy in U.K. Populations. | Fawcett KA et al. | β | 2008 | β |
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| Genome-wide association scan identifies a prostaglandin-endoperoxide synthase 2 variant involved in risk of knee osteoarthritis. | Valdes AM et al. | β | 2008 | β |
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| Impact of a single nucleotide polymorphism in the MDM2 gene on neuroblastoma development and aggressiveness: results of a pilot study on 239 patients. | Cattelani S et al. | β | 2008 | β |
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| Opinion on moderate/low cancer genetic risk markers in medical practice including comment on the article Genetic contribution to all cancers: the first demonstration using the model of breast cancers from Poland stratified by age at diagnosis and tumour pathology by Lubinski et al., Breast Cancer Res Treat 2008 Apr 15. | Costa S et al. | β | 2008 | β |
| Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway. | Hosgood HD et al. | β | 2008 | β |
| Predictive biomarkers of chemotherapy efficacy in colorectal cancer: results from the UK MRC FOCUS trial. | Braun MS et al. | β | 2008 | β |
| Reporting of human genome epidemiology (HuGE) association studies: an empirical assessment. | Yesupriya A et al. | β | 2008 | β |
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