RNA-seq drug

Aliases

RNA sequencing, direct sequencing of the RNA

External links

DrugBank · PubChem

No related entities found.

Mentioned in (83)

Papers in which this entity is mentioned.

• Integrative epigenetics and transcriptomics identify aging genes in human blood. (2026)
• Advancing regulatory variant effect prediction with AlphaGenome. (2026)
• Biomni: A General-Purpose Biomedical AI Agent. (2025)
• Multi-omic quantitative trait loci link tandem repeat size variation to gene regulation in human brain. (2025)
• Efficient and accurate search in petabase-scale sequence repositories. (2025)
• Osteosarcoma PDX-Derived Cell Line Models for Preclinical Drug Evaluation Demonstrate Metastasis Inhibition by Dinaciclib through a Genome-Targeted Approach. (2024)
• BioPipeline Creator-a user-friendly Java-based GUI for managing and customizing biological data pipelines. (2024)
• At the dawn: cell-free DNA fragmentomics and gene regulation. (2022)
• Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation. (2022)
• The complete sequence of a human genome. (2022)
• Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling. (2022)
• Inferring gene expression from cell-free DNA fragmentation profiles. (2022)
• Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers. (2022)
• Integrating molecular profiles into clinical frameworks through the Molecular Oncology Almanac to prospectively guide precision oncology. (2021)
• Most non-canonical proteins uniquely populate the proteome or immunopeptidome. (2021)
• Application of third-generation sequencing in cancer research. (2021)
• Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing. (2021)
• Evaluating the transcriptional fidelity of cancer models. (2021)
• Transcriptomic analyses of gastrulation-stage mouse embryos with differential susceptibility to alcohol. (2021)
• Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data. (2021)
• TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data. (2021)
• Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X. (2020)
• B cells and tertiary lymphoid structures promote immunotherapy response. (2020)
• Immuno-genomic landscape of osteosarcoma. (2020)
• Kcnn2 blockade reverses learning deficits in a mouse model of fetal alcohol spectrum disorders. (2020)
• ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing. (2020)
• Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data (2020)
• Data structures based on <i>k</i> -mers for querying large collections of sequencing datasets (2019)
• Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor. (2019)
• Determining cell type abundance and expression from bulk tissues with digital cytometry. (2019)
• Germline variants associated with leukocyte genes predict tumor recurrence in breast cancer patients. (2019)
• Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares. (2019)
• RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types. (2019)
• Structural variant calling: the long and the short of it. (2019)
• Best practices for bioinformatic characterization of neoantigens for clinical utility. (2019)
• Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. (2018)
• Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours. (2018)
• GeneGini: Assessment via the Gini Coefficient of Reference "Housekeeping" Genes and Diverse Human Transporter Expression Profiles. (2018)
• Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line. (2018)
• The Immune Landscape of Cancer. (2018)
• Profiling Tumor Infiltrating Immune Cells with CIBERSORT. (2018)
• Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome. (2018)
• Nanopore Sequencing Reveals High-Resolution Structural Variation in the Cancer Genome (2017)
• Integrated Molecular Meta-Analysis of 1,000 Pediatric High-Grade and Diffuse Intrinsic Pontine Glioma. (2017)
• Statistical algorithms improve accuracy of gene fusion detection. (2017)
• Toil enables reproducible, open source, big biomedical data analyses. (2017)
• Statistical modeling for sensitive detection of low-frequency single nucleotide variants. (2016)
• The Ensembl gene annotation system. (2016)
• GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information. (2016)
• Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
• Evolutionary Insights into RNA trans-Splicing in Vertebrates. (2016)
• Development and clinical application of an integrative genomic approach to personalized cancer therapy. (2016)
• The PsychENCODE project. (2015)
• Tools and best practices for data processing in allelic expression analysis. (2015)
• Integrative Clinical Sequencing in the Management of Refractory or Relapsed Cancer in Youth. (2015)
• Profiling tissue-resident T cell repertoires by RNA sequencing. (2015)
• Comparison of RNA-seq and microarray-based models for clinical endpoint prediction. (2015)
• The landscape of long noncoding RNAs in the human transcriptome. (2015)
• WASP: allele-specific software for robust molecular quantitative trait locus discovery. (2015)
• Comprehensive genomic profiles of small cell lung cancer. (2015)
• Oncogenic fusion protein EWS-FLI1 is a network hub that regulates alternative splicing. (2015)
• MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
• RADIA: RNA and DNA integrated analysis for somatic mutation detection. (2014)
• A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. (2014)
• MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. (2014)
• Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants. (2014)
• Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. (2014)
• rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. (2014)
• Inference of high resolution HLA types using genome-wide RNA or DNA sequencing reads. (2014)
• Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types. (2014)
• Normalization of RNA-seq data using factor analysis of control genes or samples. (2014)
• OptiType: precision HLA typing from next-generation sequencing data. (2014)
• Computational approaches to identify functional genetic variants in cancer genomes. (2013)
• The Genotype-Tissue Expression (GTEx) project. (2013)
• Landscape of transcription in human cells. (2012)
• The future of DNA sequence archiving. (2012)
• Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. (2012)
• Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data. (2012)
• Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs. (2012)
• Fast computation and applications of genome mappability. (2012)
• HLA typing from RNA-Seq sequence reads. (2012)
• Differential expression in RNA-seq: a matter of depth. (2011)
• Integrative analysis of the melanoma transcriptome. (2010)

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