RNA-seq drug
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Related entities (10)
| Subject | Relation | Object | p-value | Evidence |
|---|---|---|---|---|
| Cufflinks | associated_with | RNA-seq | — | 1 |
| eQTLGen Consortium | interacts_with | RNA-seq | — | 1 |
| RNA-seq | associated_with | brain bank | — | 1 |
| RNA-seq | associated_with | CommonMind Consortium | — | 1 |
| RNA-seq | expressed_in | dorsolateral prefrontal cortex | — | 1 |
| RNA-seq | associated_with | human brain | — | 1 |
| RNA-seq | associated_with | SAGE | — | 1 |
| RNA-seq | associated_with | schizophrenia | — | 1 |
| RNA-seq | associated_with | trait | — | 1 |
| RNA-seq | associated_with | transcriptome | — | 1 |
Mentioned in (104)
Papers in which this entity is mentioned.
- Integrative epigenetics and transcriptomics identify aging genes in human blood. (2026)
- Advancing regulatory variant effect prediction with AlphaGenome. (2026)
- Biomni: A General-Purpose Biomedical AI Agent. (2025)
- Multi-omic quantitative trait loci link tandem repeat size variation to gene regulation in human brain. (2025)
- Efficient and accurate search in petabase-scale sequence repositories. (2025)
- Osteosarcoma PDX-Derived Cell Line Models for Preclinical Drug Evaluation Demonstrate Metastasis Inhibition by Dinaciclib through a Genome-Targeted Approach. (2024)
- BioPipeline Creator-a user-friendly Java-based GUI for managing and customizing biological data pipelines. (2024)
- At the dawn: cell-free DNA fragmentomics and gene regulation. (2022)
- Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation. (2022)
- The complete sequence of a human genome. (2022)
- Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling. (2022)
- Inferring gene expression from cell-free DNA fragmentation profiles. (2022)
- Expansion of Schizophrenia Gene Network Knowledge Using Machine Learning Selected Signals From Dorsolateral Prefrontal Cortex and Amygdala RNA-seq Data. (2022)
- Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers. (2022)
- Integrating molecular profiles into clinical frameworks through the Molecular Oncology Almanac to prospectively guide precision oncology. (2021)
- Most non-canonical proteins uniquely populate the proteome or immunopeptidome. (2021)
- Application of third-generation sequencing in cancer research. (2021)
- Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing. (2021)
- Evaluating the transcriptional fidelity of cancer models. (2021)
- Transcriptomic analyses of gastrulation-stage mouse embryos with differential susceptibility to alcohol. (2021)
- Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data. (2021)
- Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression. (2021)
- TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data. (2021)
- Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X. (2020)
- B cells and tertiary lymphoid structures promote immunotherapy response. (2020)
- Immuno-genomic landscape of osteosarcoma. (2020)
- Gene Expression in Patient-Derived Neural Progenitors Implicates WNT5A Signaling in the Etiology of Schizophrenia. (2020)
- Kcnn2 blockade reverses learning deficits in a mouse model of fetal alcohol spectrum disorders. (2020)
- ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing. (2020)
- Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data (2020)
- Data structures based on <i>k</i> -mers for querying large collections of sequencing datasets (2019)
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. (2019)
- Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor. (2019)
- Determining cell type abundance and expression from bulk tissues with digital cytometry. (2019)
- CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder. (2019)
- Germline variants associated with leukocyte genes predict tumor recurrence in breast cancer patients. (2019)
- Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares. (2019)
- RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types. (2019)
- Structural variant calling: the long and the short of it. (2019)
- Genome-wide DNA methylation profiling identifies convergent molecular signatures associated with idiopathic and syndromic autism in post-mortem human brain tissue. (2019)
- Best practices for bioinformatic characterization of neoantigens for clinical utility. (2019)
- Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types. (2018)
- Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. (2018)
- Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours. (2018)
- GeneGini: Assessment via the Gini Coefficient of Reference "Housekeeping" Genes and Diverse Human Transporter Expression Profiles. (2018)
- Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line. (2018)
- The Immune Landscape of Cancer. (2018)
- Profiling Tumor Infiltrating Immune Cells with CIBERSORT. (2018)
- Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome. (2018)
- Nanopore Sequencing Reveals High-Resolution Structural Variation in the Cancer Genome (2017)
- Integrated Molecular Meta-Analysis of 1,000 Pediatric High-Grade and Diffuse Intrinsic Pontine Glioma. (2017)
- Statistical algorithms improve accuracy of gene fusion detection. (2017)
- Genetic effects on gene expression across human tissues. (2017)
- Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription. (2017)
- A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles. (2017)
- Toil enables reproducible, open source, big biomedical data analyses. (2017)
- Statistical modeling for sensitive detection of low-frequency single nucleotide variants. (2016)
- The Ensembl gene annotation system. (2016)
- GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information. (2016)
- Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
- Evolutionary Insights into RNA trans-Splicing in Vertebrates. (2016)
- Development and clinical application of an integrative genomic approach to personalized cancer therapy. (2016)
- The PsychENCODE project. (2015)
- Tools and best practices for data processing in allelic expression analysis. (2015)
- Integrative Clinical Sequencing in the Management of Refractory or Relapsed Cancer in Youth. (2015)
- Profiling tissue-resident T cell repertoires by RNA sequencing. (2015)
- Comparison of RNA-seq and microarray-based models for clinical endpoint prediction. (2015)
- The landscape of long noncoding RNAs in the human transcriptome. (2015)
- WASP: allele-specific software for robust molecular quantitative trait locus discovery. (2015)
- Comprehensive genomic profiles of small cell lung cancer. (2015)
- Oncogenic fusion protein EWS-FLI1 is a network hub that regulates alternative splicing. (2015)
- Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. (2014)
- MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
- RADIA: RNA and DNA integrated analysis for somatic mutation detection. (2014)
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. (2014)
- MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. (2014)
- Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants. (2014)
- Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. (2014)
- rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. (2014)
- High-throughput transcriptome sequencing identifies candidate genetic modifiers of vulnerability to fetal alcohol spectrum disorders. (2014)
- Inference of high resolution HLA types using genome-wide RNA or DNA sequencing reads. (2014)
- Effects of Acute Prenatal Exposure to Ethanol on microRNA Expression are Ameliorated by Social Enrichment. (2014)
- Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types. (2014)
- Normalization of RNA-seq data using factor analysis of control genes or samples. (2014)
- OptiType: precision HLA typing from next-generation sequencing data. (2014)
- Genome-wide association discoveries of alcohol dependence. (2014)
- Genetic variability in the regulation of gene expression in ten regions of the human brain. (2014)
- Gene expression in the human brain: the current state of the study of specificity and spatiotemporal dynamics. (2013)
- Computational approaches to identify functional genetic variants in cancer genomes. (2013)
- The Genotype-Tissue Expression (GTEx) project. (2013)
- The Genotype-Tissue Expression (GTEx) project. (2013)
- Landscape of transcription in human cells. (2012)
- The future of DNA sequence archiving. (2012)
- Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. (2012)
- Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data. (2012)
- Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs. (2012)
- Fast computation and applications of genome mappability. (2012)
- GABAergic gene expression in postmortem hippocampus from alcoholics and cocaine addicts; corresponding findings in alcohol-naïve P and NP rats. (2012)
- HLA typing from RNA-Seq sequence reads. (2012)
- Differential expression in RNA-seq: a matter of depth. (2011)
- Genetics of psychiatric disorders methods: molecular approaches. (2010)
- Integrative analysis of the melanoma transcriptome. (2010)
Merged raw entities (3)
All extracted name/type variants the normalize job merged into this entity. Use this to spot wrong merges, or aliases that should be split off.
| Raw name | Type | Papers | Mentions |
|---|---|---|---|
| rna-seq | drug | 94 | 208 |
| rna sequencing | drug | 18 | 19 |
| direct sequencing of the rna | drug | — | — |