gene expression phenotype
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Related entities (12)
| Subject | Relation | Object | p-value | Evidence |
|---|---|---|---|---|
| ATF4 | regulates | gene expression | — | 1 |
| cAMP | regulates | gene expression | — | 1 |
| dexamethasone | regulates | gene expression | — | 1 |
| estrogen receptor | regulates | gene expression | — | 1 |
| externalizing behavior | associated_with | gene expression | — | 1 |
| gene expression | expressed_in | brain tissue | — | 1 |
| gene expression | expressed_in | developmental stage | — | 1 |
| NFκB | regulates | gene expression | — | 1 |
| RARA | regulates | gene expression | — | 1 |
| SREBF1 | regulates | gene expression | — | 1 |
| SREBF2 | regulates | gene expression | — | 1 |
| TP53 | regulates | gene expression | — | 1 |
Mentioned in (92)
Papers in which this entity is mentioned.
- Infant subcortical brain volumes associated with maternal obesity and diabetes: a large multicohort human study. (2026)
- Integrative epigenetics and transcriptomics identify aging genes in human blood. (2026)
- Consortium profile: the methylation, imaging and NeuroDevelopment (MIND) consortium. (2026)
- Advancing regulatory variant effect prediction with AlphaGenome. (2026)
- Integrated in vivo combinatorial functional genomics and spatial transcriptomics of tumours to decode genotype-to-phenotype relationships. (2026)
- Modeling heterogeneity in single-cell perturbation states enhances detection of response eQTLs. (2025)
- Nanopore-based cell-free DNA fragmentation and methylation profiles from the cerebral spinal fluid of patients with lung cancer brain metastases. (2025)
- MutBERT: probabilistic genome representation improves genomics foundation models. (2025)
- Multi-omic quantitative trait loci link tandem repeat size variation to gene regulation in human brain. (2025)
- Chromosomal instability as a driver of cancer progression. (2025)
- Multiple overlapping binding sites determine transcription factor occupancy. (2025)
- Single-cell RNA-seq data augmentation using generative Fourier transformer. (2025)
- Single cell and spatial alternative splicing analysis with Nanopore long read sequencing. (2025)
- Nucleotide Transformer: building and evaluating robust foundation models for human genomics. (2025)
- High-Parameter Spatial Multi-Omics through Histology-Anchored Integration (2025)
- Transcription start sites experience a high influx of heritable variants fueled by early development. (2025)
- Global impact of unproductive splicing on human gene expression. (2024)
- CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods. (2024)
- Sequence modeling and design from molecular to genome scale with Evo. (2024)
- Detection and analysis of complex structural variation in human genomes across populations and in brains of donors with psychiatric disorders. (2024)
- Cell-Free DNA Fragmentomics: The Novel Promising Biomarker. (2023)
- A DNA methylation atlas of normal human cell types. (2023)
- At the dawn: cell-free DNA fragmentomics and gene regulation. (2022)
- Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation. (2022)
- Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression. (2022)
- Inferring gene expression from cell-free DNA fragmentation profiles. (2022)
- Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers. (2022)
- Shannon entropy as a metric for conditional gene expression in Neurospora crassa. (2021)
- Integrated Genomic Analysis Identifies Driver Genes and Cisplatin-Resistant Progenitor Phenotype in Pediatric Liver Cancer. (2021)
- Prenatal Adversity Alters the Epigenetic Profile of the Prefrontal Cortex: Sexually Dimorphic Effects of Prenatal Alcohol Exposure and Food-Related Stress. (2021)
- BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq. (2021)
- Programmed suppression of oxidative phosphorylation and mitochondrial function by gestational alcohol exposure correlate with widespread increases in H3K9me2 that do not suppress transcription. (2021)
- Joint single-cell measurements of nuclear proteins and RNA in vivo. (2021)
- Data structures based on -mers for querying large collections of sequencing data sets. (2021)
- Genotypes of informative loci from 1000 Genomes data allude evolution and mixing of human populations. (2021)
- Exposure to ethanol leads to midfacial hypoplasia in a zebrafish model of FASD via indirect interactions with the Shh pathway. (2021)
- Simultaneous single cell measurements of intranuclear proteins and gene expression (2021)
- : batch effect adjustment for RNA-seq count data. (2020)
- Structural variation in the sequencing era. (2020)
- Addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq (2020)
- Effects of chronic intermittent ethanol exposure and withdrawal on neuroblastoma cell transcriptome. (2020)
- Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data (2020)
- Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing. (2020)
- Transcriptomic signatures across human tissues identify functional rare genetic variation. (2020)
- Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity. (2019)
- Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor. (2019)
- Integrating predicted transcriptome from multiple tissues improves association detection. (2019)
- Integrating predicted transcriptome from multiple tissues improves association detection. (2019)
- Germline variants associated with leukocyte genes predict tumor recurrence in breast cancer patients. (2019)
- Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares. (2019)
- Persistent Changes in Stress-Regulatory Genes in Pregnant Women or Children Exposed Prenatally to Alcohol. (2019)
- A SNP panel for identification of DNA and RNA specimens. (2018)
- Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. (2018)
- Effects of prenatal alcohol exposure (PAE): insights into FASD using mouse models of PAE. (2018)
- Positively selected enhancer elements endow osteosarcoma cells with metastatic competence. (2018)
- Personal Cancer Genome Reporter: variant interpretation report for precision oncology. (2018)
- PASSPORT-seq: A Novel High-Throughput Bioassay to Functionally Test Polymorphisms in Micro-RNA Target Sites. (2018)
- The fractured landscape of RNA-seq alignment: the default in our STARs. (2018)
- The evolution of tumour phylogenetics: principles and practice. (2017)
- Patient-derived xenografts undergo mouse-specific tumor evolution. (2017)
- Integrated analysis of gene expression and copy number identified potential cancer driver genes with amplification-dependent overexpression in 1,454 solid tumors. (2017)
- A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications. (2017)
- Epigenetics studies of fetal alcohol spectrum disorder: where are we now? (2017)
- The impact of structural variation on human gene expression. (2017)
- Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin. (2016)
- Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
- Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer. (2016)
- Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries. (2016)
- Comprehensive analyses of tumor immunity: implications for cancer immunotherapy. (2016)
- Development and clinical application of an integrative genomic approach to personalized cancer therapy. (2016)
- RNA splicing is a primary link between genetic variation and disease. (2016)
- Tools and best practices for data processing in allelic expression analysis. (2015)
- A gene-based association method for mapping traits using reference transcriptome data. (2015)
- Integrative Clinical Sequencing in the Management of Refractory or Relapsed Cancer in Youth. (2015)
- Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data. (2015)
- The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing. (2015)
- Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants. (2014)
- Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types. (2014)
- Mitogen-activated protein kinase modulates ethanol inhibition of cell adhesion mediated by the L1 neural cell adhesion molecule. (2013)
- Ewing sarcoma protein: a key player in human cancer. (2013)
- Mutational heterogeneity in cancer and the search for new cancer-associated genes. (2013)
- Commonality in Down and fetal alcohol syndromes. (2013)
- The Genotype-Tissue Expression (GTEx) project. (2013)
- Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma. (2012)
- Mutational processes molding the genomes of 21 breast cancers. (2012)
- A framework for regularized non-negative matrix factorization, with application to the analysis of gene expression data. (2012)
- The AVPR1A gene and substance use disorders: association, replication, and functional evidence. (2011)
- Effects of ethanol and NAP on cerebellar expression of the neural cell adhesion molecule L1. (2011)
- Allele-specific copy number analysis of tumors. (2010)
- Maternal ethanol consumption alters the epigenotype and the phenotype of offspring in a mouse model. (2010)
- 3' end mRNA processing: molecular mechanisms and implications for health and disease. (2008)
- RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. (2008)
Merged raw entities (23)
All extracted name/type variants the normalize job merged into this entity. Use this to spot wrong merges, or aliases that should be split off.
| Raw name | Type | Papers | Mentions |
|---|---|---|---|
| gene expression | phenotype | 176 | 273 |
| gene expression | drug | 20 | 23 |
| mrna expression | phenotype | 14 | 32 |
| gene expression changes | phenotype | 11 | 13 |
| gene expression levels | phenotype | 9 | 10 |
| expression | phenotype | 8 | 10 |
| gene expression level | phenotype | 7 | 7 |
| expression levels | phenotype | 3 | 4 |
| gene_expression | phenotype | 3 | 3 |
| gene expression profiles | phenotype | 3 | 3 |
| differential gene expression | phenotype | 2 | 2 |
| mrna production | phenotype | 1 | 1 |
| altered expression levels | phenotype | — | — |
| developmental gene expression changes | phenotype | — | — |
| gene expression measures | phenotype | — | — |
| gene expression of both alleles | phenotype | — | — |
| gene regulatory effect | phenotype | — | — |
| high level of gene expression | phenotype | — | — |
| mrna transcription | phenotype | — | — |
| postdevelopmental gene expression changes | phenotype | — | — |
| quantitative expression trait | phenotype | — | — |
| rna transcripts | phenotype | — | — |
| transcript levels | phenotype | — | — |