gene gene
Evidence from:
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Related entities (8)
| Subject | Relation | Object | p-value | Evidence |
|---|---|---|---|---|
| gene | associated_with | adolescents | — | 1 |
| gene | expressed_in | brain tissue | — | 1 |
| gene | risk_factor_for | disorder | — | 1 |
| gene | associated_with | EXT polygenic score | 2.74e-06 | 1 |
| MAGMA | associated_with | gene | — | 1 |
| SNP | associated_with | gene | — | 8 |
| SNP | interacts_with | gene | — | 5 |
| S-PrediXcan | targets | gene | — | 1 |
Mentioned in (59)
Papers in which this entity is mentioned.
- A guide to transcriptomic deconvolution in cancer. (2026)
- Single-cell exon deletion profiling reveals splicing events that shape gene expression and cell state dynamics. (2026)
- Specificity, length and luck drive gene rankings in association studies. (2026)
- Modeling heterogeneity in single-cell perturbation states enhances detection of response eQTLs. (2025)
- Integrated single-cell multiomic profiling of caudate nucleus suggests key mechanisms in alcohol use disorder. (2025)
- Single cell and spatial alternative splicing analysis with Nanopore long read sequencing. (2025)
- Yield of genetic association signals from genomes, exomes and imputation in the UK Biobank. (2024)
- Global impact of unproductive splicing on human gene expression. (2024)
- Transient loss of Polycomb components induces an epigenetic cancer fate. (2024)
- Genome-wide association analyses identify 95 risk loci and provide insights into the neurobiology of post-traumatic stress disorder. (2024)
- Machine learning for genetics-based classification and treatment response prediction in cancer of unknown primary. (2023)
- Multi-trait genome-wide association study of opioid addiction: OPRM1 and beyond. (2022)
- Parsing genetically influenced risk pathways: genetic loci impact problematic alcohol use via externalizing and specific risk. (2022)
- Variant interpretation using population databases: Lessons from gnomAD. (2022)
- Inferring gene expression from cell-free DNA fragmentation profiles. (2022)
- Gene-based polygenic risk scores analysis of alcohol use disorder in African Americans. (2022)
- Evaluating the transcriptional fidelity of cancer models. (2021)
- Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data. (2021)
- Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction. (2021)
- Rapid genotype imputation from sequence with reference panels. (2021)
- Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes. (2021)
- PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence. (2020)
- ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing. (2020)
- Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data (2020)
- Data structures based on <i>k</i> -mers for querying large collections of sequencing datasets (2019)
- Integrating predicted transcriptome from multiple tissues improves association detection. (2019)
- Integrating predicted transcriptome from multiple tissues improves association detection. (2019)
- Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia. (2019)
- Positively selected enhancer elements endow osteosarcoma cells with metastatic competence. (2018)
- PASSPORT-seq: A Novel High-Throughput Bioassay to Functionally Test Polymorphisms in Micro-RNA Target Sites. (2018)
- Analysis of 100,000 human cancer genomes reveals the landscape of tumor mutational burden. (2017)
- Universal Patterns of Selection in Cancer and Somatic Tissues. (2017)
- Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines. (2017)
- The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies. (2017)
- The impact of structural variation on human gene expression. (2017)
- The Ensembl gene annotation system. (2016)
- New insights into the generation and role of de novo mutations in health and disease. (2016)
- GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information. (2016)
- The Reactome pathway Knowledgebase. (2016)
- Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
- GenVisR: Genomic Visualizations in R. (2016)
- DGIdb 2.0: mining clinically relevant drug-gene interactions. (2016)
- Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data. (2016)
- A gene-based association method for mapping traits using reference transcriptome data. (2015)
- Comparison of RNA-seq and microarray-based models for clinical endpoint prediction. (2015)
- MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
- Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants. (2014)
- Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. (2014)
- Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine. (2014)
- Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability. (2013)
- Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. (2013)
- ACMG clinical laboratory standards for next-generation sequencing. (2013)
- Fusion genes and their discovery using high throughput sequencing. (2013)
- DGIdb: mining the druggable genome. (2013)
- An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers. (2013)
- Landscape of transcription in human cells. (2012)
- Gene-environment interaction in psychological traits and disorders. (2011)
- Genomic regions identified by overlapping clusters of nominally-positive SNPs from genome-wide studies of alcohol and illegal substance dependence. (2011)
- Co-occurring risk factors for alcohol dependence and habitual smoking: update on findings from the Collaborative Study on the Genetics of Alcoholism. (2006)
Merged raw entities (9)
All extracted name/type variants the normalize job merged into this entity. Use this to spot wrong merges, or aliases that should be split off.
| Raw name | Type | Papers | Mentions |
|---|---|---|---|
| gene | gene | 114 | 169 |
| candidate genetic variants | gene | — | — |
| de gene | gene | — | — |
| gene-based aggregation | gene | — | — |
| gene hugo symbol | gene | — | — |
| individual genes | gene | — | — |
| ncbi entrez gene | gene | — | — |
| tier 1 gene | gene | — | — |
| tier 2 gene | gene | — | — |